Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTATATAAGAAAAATGTTCAAGACTTTAGGTACTTTTTCTAGGACTTTCTATATTGCCTAGTAGGAATCTTTTACACAATGGGAATAATTGGTCTTACATATACCCAAAAAGAAAGGGAAGAAAAAATAAATTTTAAAAAATAAAAATATGTCACCTTCATTATAATGGAAACAATATAATAAAGAATAATTATTAAAAGCAAAATATTACACCAAAGTTTCTATATAAGGAGTGATGTGGAAAGGCTATTGCCATTATCTAAAAGCCAATTTCTCATCTTCCTTCTTTCTCTCTTTCTTTCTTTGGCCTTCTTGTTTAATTTGATTAGCAAATTAATATTGTAATTAAGCTAATTAATTAGAGTTATGGCAATTGCTTTTGGAAGATTTGATGATTCTTTCAGTTGGGCCTCAATTAAGGCTTACATTGCTGAGTTTATCTCTACCTTGCTCTTTGTCTTTGCTGGAGTTGGCTCTTGCATTGCTTTCGGTTTGTACTTCTTTTTTCTCACATTTCTTATTCATTTATTCCTCAAGTCAGAATTAATTGTCACGTTGATAATATAATATAGATTTCATTTTTGTTATTTTGACAACTAAAATCGAAAGGACTTAATCAGTGGCGGAACTAAGGGGGCGAGCGGGAGCCTCAACACCCCTAAATTTCATTTCTTTTTTTTTTTTGAAAAAAAACTACATTACTTTACAAATATTAATTTTTAAAAAATTAGATAATTTTCTTACATAGTATCCTAAAGATGTAAAGATAAGTTGTTTGGTTAAGTTTGTAGAGGTAACCGTACAATTTTGATAAATATTCAAACCAAATTTCATGAAAATATACTTTTTACCTCCATAGGTCAAAGAAAAAACATAAAATCCCATCACCGATGTCATTACTTCCCAATCATTAGGTACTAACTGAGGCCATTTCCGTCATTGTTTTGAGTTAATATTATGAGCTAAAATCTTGTATAGCTCCCTAAAAAGCAGAAATAAAAATTAAAGAATTCTAACATCATTCCCGCGTGACTTCTATAACTTTCAACTAAAACAGACACCAGAAATTAAAGATGGTCACAGACCGGGCCGTTCCCATAGATTGTGGGCTTAATCGGGCCGGGCCCATAACAGACCCATGTTGTATCGGGCCGGGTGGGTTGAAAAGTTCAAAACATGGCCCAACCCCCTGTCCAAACCCCACGGGCTTTCGGGTCGGGTCGGGCCGTCTCGTCGTGTCTAAGGCAAATGTTACTAAATTAAGATCCGGCCCCCGGCCCACGAGTTCGTGCCCATGTTGGGGCGTGCTTTTCTCGTGTTCGGGCCGGGCCGTGCTTTCGTGTCGAGGTCGGCCCGACCCGCAACCATCTTTACCGGGAATGACACATTTATATATTTTTTGTTATTACAGCCAAGTTGACAGAAGATGCAGCCCTAAGCCCATCAGGGTTAGTAGCAGTAGCAGTGTGCCATGCATTTGCCCTATTTGTTGCAGTCTCAGTAGGTGCTAACATCTCCGGCGGTCACGTCAACCCCGCCGTCACCTTCGGCTTGGCCCTCGGCGGTCAAATCACCATCCTCACCGGTATTCTTTACTGGATTGCCCAGTGTGCTGGTTCTGTTGCTGCTTGTTTCCTCCTCAAGGCTTCCACTGGTGGCTTGGTCAGTACATTTTTTTTTTTACTACGGAGTACTTGGTTTAATTCTCATGTTTCAACAACATTCTTTTTGAAAATATTACCCATTTGAGTAAATTACTTGATCATATTTCGAATAGTGGCGGATCTAGAAAAATTATTTAGTGGGGTCAACATAAAAATTTGTTTTTGTAACAAAACCTTAAAACTTACAATTGACACCGTTGTTATTATGATAGCTCCATCACTTATTATTTCCATAATACAGGTAACAATAATTATTAGACTTACAAATATTGATGAAATATTGAATTTAAAAAGTAACATTGTTTTTCTAGTTGTAACATTTTGACTTTTTTGTTTGATAATACACATAATGGCGGATCTTTGTTATAGCTTAGATGGGCCTAGCCCCTAGCGTGTTTTTAGTTCCGCCCTTTTAAAATTTGAATATATGTTTGTGTAGCTTTTATACTACTGTCTTCGTTTATGAATATTTGCAACAGTTTGACTTTTACATTCTATTAATACATCAACCTTTTGTCTTTAACCACATTTTAAACTAATATATAAAAATCAAATGTCTTTGTATAGTATTATGTATGTTGTTAGATTAGATTTAACGTACGAAGTATGCTTTTCAAATATCAATTTTTTTTATATAGTTTTTACTACTCCGTATAACATAATTGCATATTTTTACTATCAAATTAGTGCATTGACAAGTGTATCAATCAAACTGTTGCAAGTACTCTGAAATGGAGGGAGTTGCGTATTAAGGCTTAATATATCCTTCTATCAGTTCCCTAATTAAACTGTTCAAGATCCGCCACTGAATTACACAATTTGTTGCAAATGTGACCTGCAGGCAACTCCAATCCACAGTGTTGCAGCAGGAGTAGGATCAATTGAAGCAGTAGTAATGGAGATCATCATAACATTTGCATTGGTATACACTGTCTATGCAACTGCAGTTGACCCTAAGAAGGGTTCCATTGGTACCATTGCACCTATTGCTATTGGGTTCATTGTTGGAGCCAACATCTTAGCCGCCGGCCCGTTCTCTGGTGGTTCAATGAACCCAGCCCGTTCATTCGGCCCGGCTGTCGCTAGTCTTGACTTCTCGGACCACTGGGTCTACTGGGTTGGACCCCTTGTTGGTGGTGGTTTGGCTGGTCTTATCTATGGCAATGTTTTCATGCAAGATGACCATGCTCCTCTCTCAAATGAGTACTAAATTTGAGTTCTTTTAATTTTATTTGTGTGCAAATCAAAGGTAGAAGTTTGCAAAAATTTGTTTGCTATAACTGCCTTTTTGTTTTCCATTTCTTTTTTTTAAAAAGAAATCTTGATTTCAGGATTTTGGTTTGTTCTTGTACATCCAATGTTCTAGTCAATGAACCTTTTCTTTTCATTTATCTTTGTTTTTCATTGTTCCAATTCAATTAAGCAAATCAATCAAGTAGTTCACCAAACTCCTGAAAGAACGGTTTAGGCAGTCCGTCTGGATAATCTTTTCTTATAAAAAAAAATTGAATCAATTATACGAAAACCCGATATATGAGCTCGGAAAAAGAAAAAAAAATCATGCAATAATAAGATTTTGAGAAGCATTATTGTCACAACTAGCAGTTAGCACTACCTAATTTGCGGTATTTCCTGGTACACAAAACGGATACAAAAACACAATTAGCTATTCTACCTACTGTAAAAAAAAAAATCAAACCTGGTCATCTTGGGCCTGACCTAACCCAAAAATAGTGGGTTTGGGCATATTTAGGCCCGATTTTTGATTTTTTGGCAGGTTCAATTTAAAATCCGGTACAAAAGTGGCCCGAAGCCCATTATGTTGGCCTAAAAGACCGATTTTTTGAAAAAATAAAACGTCCTAGAGTTTGGTCCAGCCCGATCCAACATGATGGGCTGACTATTTTTGTCGCAGCTCGGCCCGCCTTTGTCCAGGTCTAGTAAAACTATTCAAAATGTACGTCAGTACGTGTATCAATATCACTATATCAATTCACATATACTTCGTACTACGTATTACGTACCAATTGATAATACTAGTTAGTCACAAGTTCACA TTATATAAGAAAAATGTTCAAGACTTTAGGTACTTTTTCTAGGACTTTCTATATTGCCTAGTAGGAATCTTTTACACAATGGGAATAATTGGTCTTACATATACCCAAAAAGAAAGGGAAGAAAAAATAAATTTTAAAAAATAAAAATATGTCACCTTCATTATAATGGAAACAATATAATAAAGAATAATTATTAAAAGCAAAATATTACACCAAAGTTTCTATATAAGGAGTGATGTGGAAAGGCTATTGCCATTATCTAAAAGCCAATTTCTCATCTTCCTTCTTTCTCTCTTTCTTTCTTTGGCCTTCTTGTTTAATTTGATTAGCAAATTAATATTGTAATTAAGCTAATTAATTAGAGTTATGGCAATTGCTTTTGGAAGATTTGATGATTCTTTCAGTTGGGCCTCAATTAAGGCTTACATTGCTGAGTTTATCTCTACCTTGCTCTTTGTCTTTGCTGGAGTTGGCTCTTGCATTGCTTTCGCCAAGTTGACAGAAGATGCAGCCCTAAGCCCATCAGGGTTAGTAGCAGTAGCAGTGTGCCATGCATTTGCCCTATTTGTTGCAGTCTCAGTAGGTGCTAACATCTCCGGCGGTCACGTCAACCCCGCCGTCACCTTCGGCTTGGCCCTCGGCGGTCAAATCACCATCCTCACCGGTATTCTTTACTGGATTGCCCAGTGTGCTGGTTCTGTTGCTGCTTGTTTCCTCCTCAAGGCTTCCACTGGTGGCTTGGCAACTCCAATCCACAGTGTTGCAGCAGGAGTAGGATCAATTGAAGCAGTAGTAATGGAGATCATCATAACATTTGCATTGGTATACACTGTCTATGCAACTGCAGTTGACCCTAAGAAGGGTTCCATTGGTACCATTGCACCTATTGCTATTGGGTTCATTGTTGGAGCCAACATCTTAGCCGCCGGCCCGTTCTCTGGTGGTTCAATGAACCCAGCCCGTTCATTCGGCCCGGCTGTCGCTAGTCTTGACTTCTCGGACCACTGGGTCTACTGGGTTGGACCCCTTGTTGGTGGTGGTTTGGCTGGTCTTATCTATGGCAATGTTTTCATGCAAGATGACCATGCTCCTCTCTCAAATGAGTACTAAATTTGAGTTCTTTTAATTTTATTTGTGTGCAAATCAAAGGTAGAAGTTTGCAAAAATTTGTTTGCTATAACTGCCTTTTTGTTTTCCATTTCTTTTTTTTAAAAAGAAATCTTGATTTCAGGATTTTGGTTTGTTCTTGTACATCCAATGTTCTAGTCAATGAACCTTTTCTTTTCATTTATCTTTGTTTTTCATTGTTCCAATTCAATTAAGCAAATCAATCAAGTAGTTCACCAAACTCCTGAAAGAACGGTTTAGGCAGTCCGTCTGGATAATCTTTTCTTATAAAAAAAAATTGAATCAATTATACGAAAACCCGATATATGAGCTCGGAAAAAGAAAAAAAAATCATGCAATAATAAGATTTTGAGAAGCATTATTGTCACAACTAGCAGTTAGCACTACCTAATTTGCGGTATTTCCTGGTACACAAAACGGATACAAAAACACAATTAGCTATTCTACCTACTGTAAAAAAAAAAATCAAACCTGGTCATCTTGGGCCTGACCTAACCCAAAAATAGTGGGTTTGGGCATATTTAGGCCCGATTTTTGATTTTTTGGCAGGTTCAATTTAAAATCCGGTACAAAAGTGGCCCGAAGCCCATTATGTTGGCCTAAAAGACCGATTTTTTGAAAAAATAAAACGTCCTAGAGTTTGGTCCAGCCCGATCCAACATGATGGGCTGACTATTTTTGTCGCAGCTCGGCCCGCCTTTGTCCAGGTCTAGTAAAACTATTCAAAATGTACGTCAGTACGTGTATCAATATCACTATATCAATTCACATATACTTCGTACTACGTATTACGTACCAATTGATAATACTAGTTAGTCACAAGTTCACA ATGGCAATTGCTTTTGGAAGATTTGATGATTCTTTCAGTTGGGCCTCAATTAAGGCTTACATTGCTGAGTTTATCTCTACCTTGCTCTTTGTCTTTGCTGGAGTTGGCTCTTGCATTGCTTTCGCCAAGTTGACAGAAGATGCAGCCCTAAGCCCATCAGGGTTAGTAGCAGTAGCAGTGTGCCATGCATTTGCCCTATTTGTTGCAGTCTCAGTAGGTGCTAACATCTCCGGCGGTCACGTCAACCCCGCCGTCACCTTCGGCTTGGCCCTCGGCGGTCAAATCACCATCCTCACCGGTATTCTTTACTGGATTGCCCAGTGTGCTGGTTCTGTTGCTGCTTGTTTCCTCCTCAAGGCTTCCACTGGTGGCTTGGCAACTCCAATCCACAGTGTTGCAGCAGGAGTAGGATCAATTGAAGCAGTAGTAATGGAGATCATCATAACATTTGCATTGGTATACACTGTCTATGCAACTGCAGTTGACCCTAAGAAGGGTTCCATTGGTACCATTGCACCTATTGCTATTGGGTTCATTGTTGGAGCCAACATCTTAGCCGCCGGCCCGTTCTCTGGTGGTTCAATGAACCCAGCCCGTTCATTCGGCCCGGCTGTCGCTAGTCTTGACTTCTCGGACCACTGGGTCTACTGGGTTGGACCCCTTGTTGGTGGTGGTTTGGCTGGTCTTATCTATGGCAATGTTTTCATGCAAGATGACCATGCTCCTCTCTCAAATGAGTACTAA MAIAFGRFDDSFSWASIKAYIAEFISTLLFVFAGVGSCIAFAKLTEDAALSPSGLVAVAVCHAFALFVAVSVGANISGGHVNPAVTFGLALGGQITILTGILYWIAQCAGSVAACFLLKASTGGLATPIHSVAAGVGSIEAVVMEIIITFALVYTVYATAVDPKKGSIGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASLDFSDHWVYWVGPLVGGGLAGLIYGNVFMQDDHAPLSNEY Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo23126.1 vs. NCBI nr
Match: gi|902233227|gb|KNA22961.1| (hypothetical protein SOVF_029150 [Spinacia oleracea]) HSP 1 Score: 474.6 bits (1220), Expect = 1.100e-130 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1
BLAST of Spo23126.1 vs. NCBI nr
Match: gi|5911732|emb|CAB55837.1| (delta tonoplast intrinsic protein [Spinacia oleracea]) HSP 1 Score: 472.2 bits (1214), Expect = 5.400e-130 Identity = 246/247 (99.60%), Postives = 246/247 (99.60%), Query Frame = 1
BLAST of Spo23126.1 vs. NCBI nr
Match: gi|731359599|ref|XP_010691368.1| (PREDICTED: aquaporin TIP2-1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 441.4 bits (1134), Expect = 1.000e-120 Identity = 229/247 (92.71%), Postives = 235/247 (95.14%), Query Frame = 1
BLAST of Spo23126.1 vs. NCBI nr
Match: gi|4884868|gb|AAD31848.1|AF133532_1 (water channel protein MipK [Mesembryanthemum crystallinum]) HSP 1 Score: 433.7 bits (1114), Expect = 2.100e-118 Identity = 222/245 (90.61%), Postives = 234/245 (95.51%), Query Frame = 1
BLAST of Spo23126.1 vs. NCBI nr
Match: gi|255549896|ref|XP_002515999.1| (PREDICTED: aquaporin TIP2-1 [Ricinus communis]) HSP 1 Score: 409.1 bits (1050), Expect = 5.600e-111 Identity = 207/245 (84.49%), Postives = 225/245 (91.84%), Query Frame = 1
BLAST of Spo23126.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTT9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_029150 PE=3 SV=1) HSP 1 Score: 474.6 bits (1220), Expect = 7.600e-131 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1
BLAST of Spo23126.1 vs. UniProtKB/TrEMBL
Match: Q9SM46_SPIOL (Delta tonoplast intrinsic protein OS=Spinacia oleracea GN=dtip PE=2 SV=1) HSP 1 Score: 472.2 bits (1214), Expect = 3.800e-130 Identity = 246/247 (99.60%), Postives = 246/247 (99.60%), Query Frame = 1
BLAST of Spo23126.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BL48_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g221230 PE=3 SV=1) HSP 1 Score: 441.4 bits (1134), Expect = 7.100e-121 Identity = 229/247 (92.71%), Postives = 235/247 (95.14%), Query Frame = 1
BLAST of Spo23126.1 vs. UniProtKB/TrEMBL
Match: A0A140IK41_BETVM (Aquaporin TIP2 OS=Beta vulgaris subsp. maritima PE=2 SV=1) HSP 1 Score: 441.4 bits (1134), Expect = 7.100e-121 Identity = 229/247 (92.71%), Postives = 235/247 (95.14%), Query Frame = 1
BLAST of Spo23126.1 vs. UniProtKB/TrEMBL
Match: Q9XF76_MESCR (Water channel protein MipK OS=Mesembryanthemum crystallinum GN=MipK PE=2 SV=1) HSP 1 Score: 433.7 bits (1114), Expect = 1.500e-118 Identity = 222/245 (90.61%), Postives = 234/245 (95.51%), Query Frame = 1
BLAST of Spo23126.1 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2) HSP 1 Score: 389.0 bits (998), Expect = 3.800e-107 Identity = 199/244 (81.56%), Postives = 219/244 (89.75%), Query Frame = 1
BLAST of Spo23126.1 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1) HSP 1 Score: 355.9 bits (912), Expect = 3.500e-97 Identity = 186/241 (77.18%), Postives = 205/241 (85.06%), Query Frame = 1
BLAST of Spo23126.1 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1) HSP 1 Score: 353.2 bits (905), Expect = 2.300e-96 Identity = 183/243 (75.31%), Postives = 210/243 (86.42%), Query Frame = 1
BLAST of Spo23126.1 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 349.7 bits (896), Expect = 2.500e-95 Identity = 183/241 (75.93%), Postives = 201/241 (83.40%), Query Frame = 1
BLAST of Spo23126.1 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2) HSP 1 Score: 349.0 bits (894), Expect = 4.300e-95 Identity = 183/241 (75.93%), Postives = 200/241 (82.99%), Query Frame = 1
BLAST of Spo23126.1 vs. TAIR (Arabidopsis)
Match: AT3G16240.1 (delta tonoplast integral protein) HSP 1 Score: 389.0 bits (998), Expect = 2.100e-108 Identity = 199/244 (81.56%), Postives = 219/244 (89.75%), Query Frame = 1
BLAST of Spo23126.1 vs. TAIR (Arabidopsis)
Match: AT4G17340.1 (tonoplast intrinsic protein 2;2) HSP 1 Score: 348.2 bits (892), Expect = 4.100e-96 Identity = 179/234 (76.50%), Postives = 200/234 (85.47%), Query Frame = 1
BLAST of Spo23126.1 vs. TAIR (Arabidopsis)
Match: AT5G47450.1 (tonoplast intrinsic protein 2;3) HSP 1 Score: 341.3 bits (874), Expect = 5.100e-94 Identity = 172/234 (73.50%), Postives = 198/234 (84.62%), Query Frame = 1
BLAST of Spo23126.1 vs. TAIR (Arabidopsis)
Match: AT2G36830.1 (gamma tonoplast intrinsic protein) HSP 1 Score: 310.1 bits (793), Expect = 1.300e-84 Identity = 164/241 (68.05%), Postives = 190/241 (78.84%), Query Frame = 1
BLAST of Spo23126.1 vs. TAIR (Arabidopsis)
Match: AT3G26520.1 (tonoplast intrinsic protein 2) HSP 1 Score: 307.0 bits (785), Expect = 1.100e-83 Identity = 158/224 (70.54%), Postives = 187/224 (83.48%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23126.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo23126.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo23126.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo23126.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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