Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGTCCTCTCATTTAGGAAAGCATCCATCAAAATTAGGGTTTCACATAAAAACAACCCCTTCACCTCCACATCTCCATTCTTCCCGCAAACCCTAGCTGCGACACCCAAACCTCTCTCCTCTGCTTGCAGGTTTCTCTCTCCTCCATCTTCCTCAATATTTCGAACTCGTTTTCTTTTGATTTGATTGTAATGGCGTATAATTCGATTCTAACTGTGTAATTTGATCTGTGAAATAGTTGACTGAAGAAGAAAAATGGCCAAGTCGAAGAATCACACGGCTCACAACCAGTCTTACAAGGCCCACAAGAATGGCATCAAGAAACCCCGCAAGCATCGCCACTCATCTACCAAGGGGGTATGAATTTTCGCAGTTAATTTTGATTTACTCTTTGCTACATTTTCAATTTATTTTATGCTTATTGTTTTTTTTTGAAATTTGAAGATGGACCCAAAGTTCTTGAGGAACCAGAGGTACGCAAGGAAGCACAACAAGAAGGTTGACGATGTTGCAACTGAGGAAGAATAGATGATTCGCTGTTTTTACTACTGAAAATCAATTTTAGGGAAGTTTCAATTTTTGTTTGATGTTGATGGATGCTATTACTGTTAGGTTCAATTCCCAGATTTTAAATCTATCTAAGTTTTGCCCTTTTGATGGTGACAATGGTGTATTTGCAACTTATTAGTCATTACGGATTACTTTAATAGAGTAAATTTGCAAGTCCAATTTTATATTTGTTGATTTTTCTTATGTTTGTTGATGAAGTTGTTTATTGTGTCTGCGG GGTCCTCTCATTTAGGAAAGCATCCATCAAAATTAGGGTTTCACATAAAAACAACCCCTTCACCTCCACATCTCCATTCTTCCCGCAAACCCTAGCTGCGACACCCAAACCTCTCTCCTCTGCTTGCAGTTGACTGAAGAAGAAAAATGGCCAAGTCGAAGAATCACACGGCTCACAACCAGTCTTACAAGGCCCACAAGAATGGCATCAAGAAACCCCGCAAGCATCGCCACTCATCTACCAAGGGGATGGACCCAAAGTTCTTGAGGAACCAGAGGTACGCAAGGAAGCACAACAAGAAGGTTGACGATGTTGCAACTGAGGAAGAATAGATGATTCGCTGTTTTTACTACTGAAAATCAATTTTAGGGAAGTTTCAATTTTTGTTTGATGTTGATGGATGCTATTACTGTTAGGTTCAATTCCCAGATTTTAAATCTATCTAAGTTTTGCCCTTTTGATGGTGACAATGGTGTATTTGCAACTTATTAGTCATTACGGATTACTTTAATAGAGTAAATTTGCAAGTCCAATTTTATATTTGTTGATTTTTCTTATGTTTGTTGATGAAGTTGTTTATTGTGTCTGCGG ATGGCCAAGTCGAAGAATCACACGGCTCACAACCAGTCTTACAAGGCCCACAAGAATGGCATCAAGAAACCCCGCAAGCATCGCCACTCATCTACCAAGGGGATGGACCCAAAGTTCTTGAGGAACCAGAGGTACGCAAGGAAGCACAACAAGAAGGTTGACGATGTTGCAACTGAGGAAGAATAG MAKSKNHTAHNQSYKAHKNGIKKPRKHRHSSTKGMDPKFLRNQRYARKHNKKVDDVATEEE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22485.1 vs. NCBI nr
Match: gi|902208059|gb|KNA15842.1| (hypothetical protein SOVF_094520 [Spinacia oleracea]) HSP 1 Score: 120.9 bits (302), Expect = 7.500e-25 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1
BLAST of Spo22485.1 vs. NCBI nr
Match: gi|731322036|ref|XP_010671671.1| (PREDICTED: 60S ribosomal protein L29-1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 115.2 bits (287), Expect = 4.100e-23 Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1
BLAST of Spo22485.1 vs. NCBI nr
Match: gi|225431910|ref|XP_002276776.1| (PREDICTED: 60S ribosomal protein L29-1 [Vitis vinifera]) HSP 1 Score: 110.9 bits (276), Expect = 7.800e-22 Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1
BLAST of Spo22485.1 vs. NCBI nr
Match: gi|225437539|ref|XP_002275815.1| (PREDICTED: 60S ribosomal protein L29-1 [Vitis vinifera]) HSP 1 Score: 110.9 bits (276), Expect = 7.800e-22 Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1
BLAST of Spo22485.1 vs. NCBI nr
Match: gi|571518574|ref|XP_006597712.1| (PREDICTED: 60S ribosomal protein L29-1 [Glycine max]) HSP 1 Score: 110.5 bits (275), Expect = 1.000e-21 Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 1
BLAST of Spo22485.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAP3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_094520 PE=4 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 5.300e-25 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1
BLAST of Spo22485.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FJY7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g053800 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 2.900e-23 Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1
BLAST of Spo22485.1 vs. UniProtKB/TrEMBL
Match: A5BGX6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g01340 PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 5.400e-22 Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1
BLAST of Spo22485.1 vs. UniProtKB/TrEMBL
Match: A5BSZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01220 PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 5.400e-22 Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1
BLAST of Spo22485.1 vs. UniProtKB/TrEMBL
Match: A0A0B2Q3V3_GLYSO (60S ribosomal protein L29-1 OS=Glycine soja GN=glysoja_024758 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 7.100e-22 Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 1
BLAST of Spo22485.1 vs. ExPASy Swiss-Prot
Match: RL291_ARATH (60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 7.300e-20 Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1
BLAST of Spo22485.1 vs. ExPASy Swiss-Prot
Match: RL292_ARATH (60S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B PE=2 SV=2) HSP 1 Score: 94.7 bits (234), Expect = 3.600e-19 Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1
BLAST of Spo22485.1 vs. ExPASy Swiss-Prot
Match: RL29_BOVIN (60S ribosomal protein L29 OS=Bos taurus GN=RPL29 PE=2 SV=3) HSP 1 Score: 78.6 bits (192), Expect = 2.700e-14 Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1
BLAST of Spo22485.1 vs. ExPASy Swiss-Prot
Match: RL29_HUMAN (60S ribosomal protein L29 OS=Homo sapiens GN=RPL29 PE=1 SV=2) HSP 1 Score: 78.6 bits (192), Expect = 2.700e-14 Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1
BLAST of Spo22485.1 vs. ExPASy Swiss-Prot
Match: RL29_MACFA (60S ribosomal protein L29 OS=Macaca fascicularis GN=RPL29 PE=2 SV=3) HSP 1 Score: 78.6 bits (192), Expect = 2.700e-14 Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1
BLAST of Spo22485.1 vs. TAIR (Arabidopsis)
Match: AT3G06700.1 (Ribosomal L29e protein family) HSP 1 Score: 97.1 bits (240), Expect = 4.100e-21 Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1
BLAST of Spo22485.1 vs. TAIR (Arabidopsis)
Match: AT3G06680.1 (Ribosomal L29e protein family) HSP 1 Score: 94.7 bits (234), Expect = 2.000e-20 Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22485.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22485.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22485.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo22485.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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