Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAATGATTACCAAGAAGATTATGATCTTATTAAGAAGCATAACGAAGAATTAGTGAGAAAATTAAGGGAAAGTCTAGTAAGAGAAACAAAGATTAAGGAAGAGTTGTATAGAGCATTGGAGAGGGCTAAAGTGGCAGAAGATGGAGAAGAAATGCTTTGTTCACAATTAGGAGAGCTTGAAGCCGAGTCTGTGGATCAAGCGCGAGATTTTCAAGCTCGGATGATAGCGTTGATGGATCAACTCTCCCAAGCACAAAAACTTCTTCAAGGACATTCCATTACCATGCATTAA ATGGGAAATGATTACCAAGAAGATTATGATCTTATTAAGAAGCATAACGAAGAATTAGTGAGAAAATTAAGGGAAAGTCTAGTAAGAGAAACAAAGATTAAGGAAGAGTTGTATAGAGCATTGGAGAGGGCTAAAGTGGCAGAAGATGGAGAAGAAATGCTTTGTTCACAATTAGGAGAGCTTGAAGCCGAGTCTGTGGATCAAGCGCGAGATTTTCAAGCTCGGATGATAGCGTTGATGGATCAACTCTCCCAAGCACAAAAACTTCTTCAAGGACATTCCATTACCATGCATTAA ATGGGAAATGATTACCAAGAAGATTATGATCTTATTAAGAAGCATAACGAAGAATTAGTGAGAAAATTAAGGGAAAGTCTAGTAAGAGAAACAAAGATTAAGGAAGAGTTGTATAGAGCATTGGAGAGGGCTAAAGTGGCAGAAGATGGAGAAGAAATGCTTTGTTCACAATTAGGAGAGCTTGAAGCCGAGTCTGTGGATCAAGCGCGAGATTTTCAAGCTCGGATGATAGCGTTGATGGATCAACTCTCCCAAGCACAAAAACTTCTTCAAGGACATTCCATTACCATGCATTAA MGNDYQEDYDLIKKHNEELVRKLRESLVRETKIKEELYRALERAKVAEDGEEMLCSQLGELEAESVDQARDFQARMIALMDQLSQAQKLLQGHSITMH Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22403.1 vs. NCBI nr
Match: gi|902185990|gb|KNA10591.1| (hypothetical protein SOVF_142840 [Spinacia oleracea]) HSP 1 Score: 184.5 bits (467), Expect = 8.900e-44 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1
BLAST of Spo22403.1 vs. NCBI nr
Match: gi|410129770|dbj|BAM64848.1| (hypothetical protein [Beta vulgaris]) HSP 1 Score: 134.8 bits (338), Expect = 8.100e-29 Identity = 75/93 (80.65%), Postives = 86/93 (92.47%), Query Frame = 1
BLAST of Spo22403.1 vs. NCBI nr
Match: gi|731321282|ref|XP_010671267.1| (PREDICTED: uncharacterized protein LOC104888103 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 134.8 bits (338), Expect = 8.100e-29 Identity = 75/93 (80.65%), Postives = 86/93 (92.47%), Query Frame = 1
BLAST of Spo22403.1 vs. NCBI nr
Match: gi|661891082|emb|CDP04964.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 100.9 bits (250), Expect = 1.300e-18 Identity = 54/92 (58.70%), Postives = 75/92 (81.52%), Query Frame = 1
BLAST of Spo22403.1 vs. NCBI nr
Match: gi|645257864|ref|XP_008234609.1| (PREDICTED: MAP7 domain-containing protein 1-like [Prunus mume]) HSP 1 Score: 99.8 bits (247), Expect = 2.900e-18 Identity = 56/90 (62.22%), Postives = 72/90 (80.00%), Query Frame = 1
BLAST of Spo22403.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVQ2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_142840 PE=4 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 6.200e-44 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1
BLAST of Spo22403.1 vs. UniProtKB/TrEMBL
Match: K4Q0G2_BETVU (Uncharacterized protein OS=Beta vulgaris PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 5.600e-29 Identity = 75/93 (80.65%), Postives = 86/93 (92.47%), Query Frame = 1
BLAST of Spo22403.1 vs. UniProtKB/TrEMBL
Match: A0A068U9T8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019842001 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 9.000e-19 Identity = 54/92 (58.70%), Postives = 75/92 (81.52%), Query Frame = 1
BLAST of Spo22403.1 vs. UniProtKB/TrEMBL
Match: Q0ZIH9_TOBAC (UP-9A OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 1.700e-17 Identity = 51/88 (57.95%), Postives = 72/88 (81.82%), Query Frame = 1
BLAST of Spo22403.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CS37_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050500 PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 2.200e-17 Identity = 52/94 (55.32%), Postives = 72/94 (76.60%), Query Frame = 1
BLAST of Spo22403.1 vs. TAIR (Arabidopsis)
Match: AT3G49570.1 (response to low sulfur 3) HSP 1 Score: 62.4 bits (150), Expect = 1.800e-10 Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
BLAST of Spo22403.1 vs. TAIR (Arabidopsis)
Match: AT3G49580.1 (response to low sulfur 1) HSP 1 Score: 62.0 bits (149), Expect = 2.400e-10 Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
BLAST of Spo22403.1 vs. TAIR (Arabidopsis)
Match: AT5G24660.1 (response to low sulfur 2) HSP 1 Score: 60.5 bits (145), Expect = 6.900e-10 Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 1
BLAST of Spo22403.1 vs. TAIR (Arabidopsis)
Match: AT5G24655.1 (response to low sulfur 4) HSP 1 Score: 57.0 bits (136), Expect = 7.600e-9 Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22403.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22403.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22403.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo22403.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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