Spo22399 (gene) | SpinachBase

Overview


Name	Spo22399
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ribonuclease P/MRP protein subunit POP5
Location	chr3 : 7922504 .. 7928278 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTAAAAATAGACCGGGTCCAACCAGATCTAAATCTGAAACCATTGCCATCCCTACTTGTGAGTACCCAGCAGTTCAGCCGTATTGCACGCACCTAACCCCTTATTTTGCAAACAATTTTTTCTACTCACCTCGACGGCTCGACTTCCTCTCACCGGCCGGCGGAAACAACAGTCCGACACAGAAGGAAATTACAGGCAGCACGGCGGCACCGAATAATCTCTTCCTCCTTTCAGCTTTGCTCAATTGATAAACACTGTTATTTAGAGAGTGAATAAATCAAGTCTTAGACAGAAAAGATACATAAAAAAAAGAACGCCCGCCATTACGCCCCCACCATTTCGCTGGAGAAATTGGTAATCTATCGAAGACGGCAGCGACGTTAGTGGGACCATTTTTCCGACGAATTCTCCACATTCTTTCCTTTAGTACCGTCACTTATCTCGCCTCTGACTTTGCCGGAGCTCGTTGGTTCAAGGTATGTCGCGGAAAATAACAACGCCATTCTTTGCGAATTCATTACTGCTAATTTTTTGTTAAACATGGTAATTCTTTGATAAAGGTTTGCTCTTTGAACCCTTTGAATTTGGTTTAGGATTTGGAATTTGACGAGAGAGTCGAGATGAGTACCAATTTGCAGATTAATTACAAATTTCATTGGTTCAATTGTTGTGTTGATTTTTTTAGGGTTTGGATTTTGAACTTGCTTAGGAATTAGGGCTTGAGTTCTGGCTGTAATTTCATTTGTGAAATATTTACTTAGTTTAGATAATTGGACGGACTAGTAAGTTAATTGAAAGAATTATCAAGTATGTAGTGCGAGCAGTATTTATCTAGGGATGTTTTTAGCTTCAACTTCACGGTAATTCGCTGGCATATGTTATGGCAGCGTTGATTTATTGTTGTTGTGGATTTTTCAATGCAACTATGCAGTTATAGTGGAATTGGAGCTATGGGTGTTGTTGTTTCAGCTGGTCCATTGTACTTTGTGGTGGTTGGTTGGTTGGTGGTGATATTTTTCGTTGTATAGTTGCTTATGGACTTGGGAGATTTCGAAACATATACTCCTATCATTAATTCAACTTGGAAATGATGAATTACACCGAGTTTAAATCATGTTACTTTTGGGCTATCAAGGTTTTGCAATCTTTATGTAGCAAGCTTACGCAACTAGGTTTTGAGACAATTAAGTCGAGTACACGTGCTTTGCAATTTATCTTTAAAATTTTAGACAATTTAGTCAGTTAATTAGATATTCACTCATTTCTCAAGTCTATACAAAAAGTCTGTTTTGGCTGAATGTTATCATCATGGTTTAAGTTGAATTTGTCTTGCATAGTTCCATGTAATGATTGTATTAGGTCGAGTTAATTCATGAAGTATAAGATATAGACAATTCACTGATGTCTGCATTTTTTTATATGATTGATCTCTGTTTCCATTTTAGGCTATATTAGATACATGTATTTTTGCTAGGTCCTTTGGAAACAACTTTATTGTTGCCTTGGTCAGTTGTATTTCACCACTGATCAATCTATGTTCATTATTCAACAATGTGAATTTGATGGACCAAATGTTTGTCTTTTTCTTGATCTTCATGCAAAATCACTCATTTTCTTAGGTCCTTACGGACTTATTGTGGTTAATTTTGGTGGTATCTGTTGCTGTGTTTACTGTCGTATTGCAACTAGATAAGTTGAGCCAGCATTTTCAGCATGCCTGTATTCTTTCGTGAAAAGTGATTGTCTATGAACTGATATAGGATGACTTTGTCTAATCCAAATAGGTGAGACGTCATGGTGGGATTTAAAAATAGATACATGGTGCTAGAAATATTTCTAGATCCAAACAAGGATCTGATGGTGGATGATCCTGTTATTGTTACCCAGTTCAATGTGTCGAAAGCAATTAAAGACAGCATTCTTGTAAATTTTGGGGAGTGTGGCCTGGCTTCTTCACTTGGATCCTTCCAAGGTAAGCTCCTAAGTCCTAACCATGGTTTTCTTTTATATGCAAGTTGATACAGTAGTCTACCCCCTGATTTAAGGCTTGATATTTTCATATTTCTGCAGTGAAGTATGTGAATCCAATTACAAAGTTGTGTATGGTACGAACATCAAGGGAGGACTACCAGAAAGTCTGGTGTGCAATTACCATGGTTTCAAGCATTGGAAACTGCCCTGCTTTATTTAATTTGCTTGATCTAAGTGGTGAGTGGCATAGCAACTATTGAAACTTGAAGTAGCTAGATGAAGATGACTAAATCAACTTTCCAAAAACCTGTATACATTTGCTGTATTTTCTTGATTGATTTAAGTTAGCGACTTGCTCACTAACTTTCTATAAGAATTGAGCTTCTGATTCGTTCTGTGGTTGAATCGCCGAATTTTAATAGCTTTCCCTTAGTTCTTGAGTTTTAAAGCTTGGATGTTCAAAACATTGTTAACGTTTCCATGTTGGTTTTGTGGGAATACTGGTGCTTGATGTGTTTAATTATCCCATTTAGTTGATATAACTACAAGTGCGCGGTTAGTGTGTAGGCTAGTAAATAATGAAGTTGAGATGGTGGAATAATGGCATCTCTCCCAAGAGTCCCCACATTAGAACCTTGTGATCTAGGATTCAAATCTCATGGGATCCATTTGAGGGATTTCCCTCATCTCCCGCCTCGATACCCTTTATCTTACCAAAGAATATCAGTTAAGAGGTGAATGGTACTCAACTGGAACTAGACTTGTTCGACCTAAAAAGAAAGTAATGAAGAATGATAATTTAGTTGTATGCAGTCTAGCCGTCTAGGTTGTCTGTTGGAACTTGGAAGTTCATTTGTTAACTCTTGTCCATTAAGATTTTCTGCCCTATATTGAGCCATTGGCTGCCTAGTTAGCAGCTTGACTAGTTAATATAGATTTGGATTGATATTTGACAACCTAGGATGACAAGTTCGGTTCACAATCCACACCTTTATTGCCTTTTGCTCTTTAACATTAATGTATAATCTGCAGTACTTATTATATCAGCAAGCTTCTTCTGGAAGCCTGGAATTCTCGTTATTCTTTTAACCTAGATGGTCTGATGTAGCATTTTTTGAAGTTTACTTAAGTTGCTAGTTGTGGTTGTGGCTTTTAGTATCACATGTTTCATTCTCTTTCAGGGAGCGGAATTTATCTTTGGTAAGATGGAATTATTTACCCCTGAAAATTGGCTAGTTTTGCTTGTGTTGTTTCAACATGATCGTATAGATATAAACTGAAAATAACTAAATACTGCCTCACCATTATTTTCTGCTCATTCTGTTTGTTAAGAACGCTGCATTATGACTTATGATTGAGCTGAGATTGTCATTTACTGACGTCTTTCTTTATCTGTTGCAGGGAGTATCAAAGCCTGCAGAAAGGCTACGTTGAGTTGCGAAGAAGCAAAATTTGAGCAGTATAAGCTTGCAAAGGGAGGTCAAGTTACAGATGAGTTGAATCGGCAAATGCAGAACTTTCTCGAGAGGATTAAAGTACTTGAACATTAGTGAGTATTCCTTTTTTGTAATCAGTACTGTAGTTTTGGAAATGAAGATGTTTAGACAATCTTCCTATATTGATCAATATGAGTTAGGTTTACGAAAGATTATACCTAGTTGGCAGCAAATTGCAAATATATGGTCCTCATAAAGTGGTTGAGCTCCAGAATGAAGCTCTCTTGTCTAAATACACTACAACGTTGTCTTGAACCCCTTTCATTAGAATGATAGGTGATGGCCCTGTGATTCTATTAAATGTACCCGAGCTTTCTGTCGACATTCTTCATTAAATGCCATTATGTGCTGTCCATAACATGTGAAAGTTTAGAGTTTTTAGCTTCCTTTGCATTACTTTCAGTTGGCAGTATAGGTAATATTATCTATCAACTGAGAAGTTAGAAGATAAGGGCAGTGAAGTTCTTATTGTTATGTTGCAACTTCTGGCATCTGCATACTTCTTGACACCTTGCCAGTAGCCTATGTTTGTGTCTAAGTAAAGGCTCTAGCTTAAACCTTTGAGAAACAATGAGAGGCTAAACCATGCGGGCCGACAAGTCAACCCTAGCCCAATGGAGTGAGCACGGCTGGTATTAGTTAACCCAAGTCTGTCACACGGGCAGACGGCTTAGCCGTCACCTAGGCTAAGCTAAGCCAAACTAGTTTTTTTTTTTTGTAGAAAAATTAAAAGACTTTGTCCATCACCATTCACCAACCTCTCCATACCCTTTCCCTGTTCCTCACAATCCTCCATGCTGCTGTTAAGAATGAAAGAAGGATTGTAGGTATCAGTTAAGAAGCTTATGAACTCGGTATTTTATTTTTGACATAAGGAAAAGTAATGTTTAGATACATACCTGTACTAAAAGAAAATTAGACAACAAGATTTTCGCAATTTTATGTGTATCTCCCACTCGAGCTCGACTCACCTTGAGGATAGGAAAGTAACCCATTGAGATTTGAGAAAGCATTTCCTGGGCAACTTAATTCTTAAGTTTCTGTAAACATAAAGTCTGAAACTCTGAATACATGGTGGAGTTAATATGTAGCTTTAATGTCTTCTGTTATGGGCATGGGGTGGAGAAATGGAGATCATATGGTCGATCCTTGTTATTACTATGCGAGGATTGTGGCTAGGGACTATGGACCATATCACCATACTGCCTATATTTAATGCTCGTTTATCGATACTAATCTATTAAAAAGCGTTTTAAAGAAATTAATCCGGATATTAGGTTGCTTATTCATTTATTAAACCACAGTTGATTCAGCATCTTGTGTTTAGGATGCCCAGATGCGTTTTGAGTAATTAAGCAAATTTAAAGTTGCCTTGTCTGCCATTTATTTTGTCACGCATTAAAATATAGTCCGCACACATCTAACTTGTTAGGTTCAGTGATTGCTTGATAAAATTATTCATCACTGATCCGAGAATATTCTGTATTAGCCTAGGGATCAACCTGGAAGGTAGTAAGAGTGCGTTCTATTCACTTTTTTTTTAAAAATTTTTTAAAGAGGTTAATTCTAAGCCTTATTGGTAAGGTGTTCTTTTAAGGTAGGTAAGGGAAGGTTCTGCGAAGGCGCCGGAACCGGCACTGTCAAGTCAGCCAAAATTATCATACAAGGTCCTTTGGGAGAGGGCGGGACCGCGGGAGGAATCCGCCAGGCCCGGCCCTGGGCATAGGCGAGGGGTGCGACGGCCTAGGACCCAGGGCCGAAAGGGGACTATCTGCGTCCAGTTATTTTTTATACGTATTATAAGGACAACTTTTATGTAAGACCGCCTTACCGGAAAGACCACTTTGATTGCTTAACTAATTGATTTCATTGTTTAACTAATTAGTTTTAGTGCTTAACTAATTAGTTTTAGTGTTTAACTAAATATTTCCAATGTTTAACTAATTAGTTTCAATGCTTAACTAATTGCTTTCATTGCTTAACTTATATGACAACGAGGTGGTCTTTCTTGTAAGACCGCCTTATGTAAAAGTTTGTAGTATTATAAACGCAATGAATCTAACATAAATGATTATGTGGCTCAATGGTAGCTGACGTGTTGATGATTACCCCTAACCAAGGATCGCCTCCCGCTTTCCCCGGTCCCCCCTCCGTGCCAAATTTGTTTTCCTTTTTTTTTTGTACTGATGTTCTCCTTTTTTTTTTTTTTTTTTTTTTCAATTTATGTTTGATAAATTTATTTATTTTTTCTTCCTAGTTTTATATTATGTACATTTTTTGGGTAAATATTCATTGTCTTTCTTAT

mRNA sequence

CCCTTAAAAATAGACCGGGTCCAACCAGATCTAAATCTGAAACCATTGCCATCCCTACTTGTGAGTACCCAGCAGTTCAGCCGTATTGCACGCACCTAACCCCTTATTTTGCAAACAATTTTTTCTACTCACCTCGACGGCTCGACTTCCTCTCACCGGCCGGCGGAAACAACAGTCCGACACAGAAGGAAATTACAGGCAGCACGGCGGCACCGAATAATCTCTTCCTCCTTTCAGCTTTGCTCAATTGATAAACACTGTTATTTAGAGAGTGAATAAATCAAGTCTTAGACAGAAAAGATACATAAAAAAAAGAACGCCCGCCATTACGCCCCCACCATTTCGCTGGAGAAATTGGTAATCTATCGAAGACGGCAGCGACGTTAGTGGGACCATTTTTCCGACGAATTCTCCACATTCTTTCCTTTAGTACCGTCACTTATCTCGCCTCTGACTTTGCCGGAGCTCGTTGGTTCAAGGTGAGACGTCATGGTGGGATTTAAAAATAGATACATGGTGCTAGAAATATTTCTAGATCCAAACAAGGATCTGATGGTGGATGATCCTGTTATTGTTACCCAGTTCAATGTGTCGAAAGCAATTAAAGACAGCATTCTTGTAAATTTTGGGGAGTGTGGCCTGGCTTCTTCACTTGGATCCTTCCAAGTGAAGTATGTGAATCCAATTACAAAGTTGTGTATGGTACGAACATCAAGGGAGGACTACCAGAAAGTCTGGTGTGCAATTACCATGGTTTCAAGCATTGGAAACTGCCCTGCTTTATTTAATTTGCTTGATCTAAGTGGGAGTATCAAAGCCTGCAGAAAGGCTACGTTGAGTTGCGAAGAAGCAAAATTTGAGCAGTATAAGCTTGCAAAGGGAGGTCAAGTTACAGATGAGTTGAATCGGCAAATGCAGAACTTTCTCGAGAGGATTAAAGTACTTGAACATTAGTAGGTAAGGGAAGGTTCTGCGAAGGCGCCGGAACCGGCACTGTCAAGTCAGCCAAAATTATCATACAAGGTCCTTTGGGAGAGGGCGGGACCGCGGGAGGAATCCGCCAGGCCCGGCCCTGGGCATAGGCGAGGGGTGCGACGGCCTAGGACCCAGGGCCGAAAGGGGACTATCTGCGTCCAGTTATTTTTTATACGTATTATAAGGACAACTTTTATGTAAGACCGCCTTACCGGAAAGACCACTTTGATTGCTTAACTAATTGATTTCATTGTTTAACTAATTAGTTTTAGTGCTTAACTAATTAGTTTTAGTGTTTAACTAAATATTTCCAATGTTTAACTAATTAGTTTCAATGCTTAACTAATTGCTTTCATTGCTTAACTTATATGACAACGAGGTGGTCTTTCTTGTAAGACCGCCTTATGTAAAAGTTTGTAGTATTATAAACGCAATGAATCTAACATAAATGATTATGTGGCTCAATGGTAGCTGACGTGTTGATGATTACCCCTAACCAAGGATCGCCTCCCGCTTTCCCCGGTCCCCCCTCCGTGCCAAATTTGTTTTCCTTTTTTTTTTGTACTGATGTTCTCCTTTTTTTTTTTTTTTTTTTTTTCAATTTATGTTTGATAAATTTATTTATTTTTTCTTCCTAGTTTTATATTATGTACATTTTTTGGGTAAATATTCATTGTCTTTCTTAT

Coding sequence (CDS)

ATGGTGGGATTTAAAAATAGATACATGGTGCTAGAAATATTTCTAGATCCAAACAAGGATCTGATGGTGGATGATCCTGTTATTGTTACCCAGTTCAATGTGTCGAAAGCAATTAAAGACAGCATTCTTGTAAATTTTGGGGAGTGTGGCCTGGCTTCTTCACTTGGATCCTTCCAAGTGAAGTATGTGAATCCAATTACAAAGTTGTGTATGGTACGAACATCAAGGGAGGACTACCAGAAAGTCTGGTGTGCAATTACCATGGTTTCAAGCATTGGAAACTGCCCTGCTTTATTTAATTTGCTTGATCTAAGTGGGAGTATCAAAGCCTGCAGAAAGGCTACGTTGAGTTGCGAAGAAGCAAAATTTGAGCAGTATAAGCTTGCAAAGGGAGGTCAAGTTACAGATGAGTTGAATCGGCAAATGCAGAACTTTCTCGAGAGGATTAAAGTACTTGAACATTAG

Protein sequence

MVGFKNRYMVLEIFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQVKYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCEEAKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo22399.1	Spo22399.1	mRNA

Homology

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BLAST of Spo22399.1 vs. NCBI nr
Match: gi|731321302|ref|XP_010671279.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 293.5 bits (750), Expect = 2.100e-76
Identity = 144/154 (93.51%), Postives = 150/154 (97.40%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMVLEIFLDPNKDL VDDPVIVTQFNVSKA+KDSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVLEIFLDPNKDLKVDDPVIVTQFNVSKAMKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCEE 120
           KYVNPITKLC+VRTSREDYQKVWCAITMVSSIGNCPAL NLLDLSGSIKACRKA LSCEE
Sbjct: 61  KYVNPITKLCIVRTSREDYQKVWCAITMVSSIGNCPALCNLLDLSGSIKACRKAALSCEE 120

Query: 121 AKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
           AKFEQYKL KGGQVTDELN+QMQN+LERI++LEH
Sbjct: 121 AKFEQYKLVKGGQVTDELNKQMQNYLERIRLLEH 154

[Close]

BLAST of Spo22399.1 vs. NCBI nr
Match: gi|225455163|ref|XP_002268478.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Vitis vinifera])

HSP 1 Score: 261.9 bits (668), Expect = 6.900e-67
Identity = 122/154 (79.22%), Postives = 140/154 (90.91%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYM++E+FLDPN+DL VDDP+I+TQFNVSKAIKDSILVNFGECGLASS GSFQV
Sbjct: 1   MVGFKNRYMIMEVFLDPNRDLAVDDPIIITQFNVSKAIKDSILVNFGECGLASSFGSFQV 60

Query: 61  KYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCEE 120
           KYVNPITKLC++R SRE+YQKVW AITMV SIG+CP LFNLLDLSGSI+ACR A L C++
Sbjct: 61  KYVNPITKLCIIRASREEYQKVWSAITMVKSIGHCPVLFNLLDLSGSIRACRNAALKCDK 120

Query: 121 AKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
           AKFEQYKL  G ++TD++N QMQN LERIK+LEH
Sbjct: 121 AKFEQYKLVVGDRLTDDINNQMQNCLERIKILEH 154

[Close]

BLAST of Spo22399.1 vs. NCBI nr
Match: gi|224132544|ref|XP_002321344.1| (hypothetical protein POPTR_0015s00340g [Populus trichocarpa])

HSP 1 Score: 254.6 bits (649), Expect = 1.100e-64
Identity = 120/154 (77.92%), Postives = 138/154 (89.61%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMV+E+FLDPN+DL VDDP+I+TQ+NVSKAIKDSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCEE 120
           KYVNPITKLC++RTSRE+YQKVW AITMV  IGNCP LFNLLDLSGSIKAC+ A L C+E
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 121 AKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
            KFE YKLA G  ++ ++N+ MQN LE+IK+LEH
Sbjct: 121 MKFEHYKLAAGAPLSTDVNQHMQNCLEKIKILEH 154

[Close]

BLAST of Spo22399.1 vs. NCBI nr
Match: gi|118482082|gb|ABK92972.1| (unknown [Populus trichocarpa])

HSP 1 Score: 254.2 bits (648), Expect = 1.400e-64
Identity = 119/154 (77.27%), Postives = 138/154 (89.61%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMV+E+FLDPN+DL VDDP+++TQ+NVSKAIKDSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIVITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCEE 120
           KYVNPITKLC++RTSRE+YQKVW AITMV  IGNCP LFNLLDLSGSIKAC+ A L C+E
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 121 AKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
            KFE YKLA G  ++ ++N+ MQN LE+IK+LEH
Sbjct: 121 MKFEHYKLAAGAPLSTDVNQHMQNCLEKIKILEH 154

[Close]

BLAST of Spo22399.1 vs. NCBI nr
Match: gi|1000979288|ref|XP_002513218.2| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ricinus communis])

HSP 1 Score: 250.0 bits (637), Expect = 2.700e-63
Identity = 117/154 (75.97%), Postives = 138/154 (89.61%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMV+EIFLDPN+DL  DDP+I+TQFNVSKAIK+SILVN+GECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEIFLDPNRDLNTDDPIIITQFNVSKAIKESILVNYGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCEE 120
           KYVNPITKLC++R SRE+YQKVW A+TMV SIGNCP LFNLLDLSGSI+AC++A L C+E
Sbjct: 61  KYVNPITKLCIIRASREEYQKVWSAVTMVRSIGNCPVLFNLLDLSGSIRACKRAALKCDE 120

Query: 121 AKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
           AKFEQ+KLA G  ++ ++   MQN LE+IK+LEH
Sbjct: 121 AKFEQHKLAVGDHLSADVTLHMQNCLEKIKILEH 154

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BLAST of Spo22399.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CS50_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050570 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.500e-76
Identity = 144/154 (93.51%), Postives = 150/154 (97.40%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMVLEIFLDPNKDL VDDPVIVTQFNVSKA+KDSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVLEIFLDPNKDLKVDDPVIVTQFNVSKAMKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCEE 120
           KYVNPITKLC+VRTSREDYQKVWCAITMVSSIGNCPAL NLLDLSGSIKACRKA LSCEE
Sbjct: 61  KYVNPITKLCIVRTSREDYQKVWCAITMVSSIGNCPALCNLLDLSGSIKACRKAALSCEE 120

Query: 121 AKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
           AKFEQYKL KGGQVTDELN+QMQN+LERI++LEH
Sbjct: 121 AKFEQYKLVKGGQVTDELNKQMQNYLERIRLLEH 154

[Close]

BLAST of Spo22399.1 vs. UniProtKB/TrEMBL
Match: B9IDE0_POPTR (Ribonuclease P family protein OS=Populus trichocarpa GN=POPTR_0015s00340g PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 7.700e-65
Identity = 120/154 (77.92%), Postives = 138/154 (89.61%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMV+E+FLDPN+DL VDDP+I+TQ+NVSKAIKDSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCEE 120
           KYVNPITKLC++RTSRE+YQKVW AITMV  IGNCP LFNLLDLSGSIKAC+ A L C+E
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 121 AKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
            KFE YKLA G  ++ ++N+ MQN LE+IK+LEH
Sbjct: 121 MKFEHYKLAAGAPLSTDVNQHMQNCLEKIKILEH 154

[Close]

BLAST of Spo22399.1 vs. UniProtKB/TrEMBL
Match: A9P9B9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.000e-64
Identity = 119/154 (77.27%), Postives = 138/154 (89.61%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMV+E+FLDPN+DL VDDP+++TQ+NVSKAIKDSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIVITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCEE 120
           KYVNPITKLC++RTSRE+YQKVW AITMV  IGNCP LFNLLDLSGSIKAC+ A L C+E
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 121 AKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
            KFE YKLA G  ++ ++N+ MQN LE+IK+LEH
Sbjct: 121 MKFEHYKLAAGAPLSTDVNQHMQNCLEKIKILEH 154

[Close]

BLAST of Spo22399.1 vs. UniProtKB/TrEMBL
Match: A0A058ZZ57_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00477 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.200e-63
Identity = 114/154 (74.03%), Postives = 139/154 (90.26%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMV+E+FLDPN++L VDDP+I+TQFNVSKAI+DSILVNFGECGLASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRELGVDDPIILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCEE 120
           KYVNP+TKLC++R SRE++QKVW AIT+V+S+GNCP LFNLLDLSGSIKAC+KA L C+E
Sbjct: 61  KYVNPVTKLCIIRASREEHQKVWAAITLVTSVGNCPVLFNLLDLSGSIKACKKAALKCDE 120

Query: 121 AKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
            KFEQYKL  G +++ E+ +QM N  E+IK+L+H
Sbjct: 121 LKFEQYKLVSGSRLSPEVVQQMHNCQEKIKILDH 154

[Close]

BLAST of Spo22399.1 vs. UniProtKB/TrEMBL
Match: A0A058ZZZ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00475 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 9.400e-63
Identity = 115/154 (74.68%), Postives = 139/154 (90.26%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQV 60
           MVGFKNRYMV+E+FLDPN++L VDDP+I+TQFNVSKAI+DSILVNFGECGLASSLGSFQV
Sbjct: 62  MVGFKNRYMVMEVFLDPNRELGVDDPIILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 121

Query: 61  KYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCEE 120
           KYVNPITKLC++R SRE++QKVW AIT+V+S+G+CP LFNLLDLSGSIKAC+KA L C+E
Sbjct: 122 KYVNPITKLCIIRASREEHQKVWAAITLVTSVGSCPVLFNLLDLSGSIKACKKAALKCDE 181

Query: 121 AKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
            KFEQYKL  G +++ E+ +QM N  E+IK+LEH
Sbjct: 182 LKFEQYKLVSGSRLSPEVIQQMHNCQEKIKILEH 215

[Close]

BLAST of Spo22399.1 vs. ExPASy Swiss-Prot
Match: POP5_ARATH (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.200e-52
Identity = 101/155 (65.16%), Postives = 129/155 (83.23%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDD-PVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQ 60
           MVGFKNRYM++E+FLDP+KDL+ +  P+I+TQFN+SKAIKDSILVNFGECGL SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VKYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCE 120
           VKYVNPITKLC+VR+SRE++++VW AIT+V SIGNCP + NLLD+SG I+ACR   L C+
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 EAKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
           + KFEQ   +    +++E  RQM   LE+IK+LE+
Sbjct: 121 KEKFEQCSKS----LSEEEIRQMNTSLEKIKLLEN 151

[Close]

BLAST of Spo22399.1 vs. ExPASy Swiss-Prot
Match: POP5_DICDI (Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum GN=pop5 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-9
Identity = 38/117 (32.48%), Postives = 66/117 (56.41%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLE-IFLDPNKDLMVDDPVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQ 60
           MV  KNRY++ E I+ D  K   + D  +  QF +S  +K+ +    GE    +   + +
Sbjct: 1   MVRLKNRYLMTEVIWHDNEKSTQLSDSWLF-QF-ISNEVKEKL----GELTYEAFKKTLK 60

Query: 61  VKYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATL 117
           + YVNP T + ++R S E Y+ +W A+T+++S    P  F ++ + GSI+ C+KA +
Sbjct: 61  IIYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAI 111

[Close]

BLAST of Spo22399.1 vs. TAIR (Arabidopsis)
Match: AT1G04635.1 (ribonuclease P family protein / Rpp14 family protein)

HSP 1 Score: 206.5 bits (524), Expect = 1.200e-53
Identity = 101/155 (65.16%), Postives = 129/155 (83.23%), Query Frame = 1


		  
Query: 1   MVGFKNRYMVLEIFLDPNKDLMVDD-PVIVTQFNVSKAIKDSILVNFGECGLASSLGSFQ 60
           MVGFKNRYM++E+FLDP+KDL+ +  P+I+TQFN+SKAIKDSILVNFGECGL SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VKYVNPITKLCMVRTSREDYQKVWCAITMVSSIGNCPALFNLLDLSGSIKACRKATLSCE 120
           VKYVNPITKLC+VR+SRE++++VW AIT+V SIGNCP + NLLD+SG I+ACR   L C+
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 EAKFEQYKLAKGGQVTDELNRQMQNFLERIKVLEH 155
           + KFEQ   +    +++E  RQM   LE+IK+LE+
Sbjct: 121 KEKFEQCSKS----LSEEEIRQMNTSLEKIKLLEN 151

The following BLAST results are available for this feature:

BLAST of Spo22399.1 vs. NCBI nr
BLAST of Spo22399.1 vs. UniProtKB/TrEMBL
BLAST of Spo22399.1 vs. ExPASy Swiss-Prot
BLAST of Spo22399.1 vs. TAIR (Arabidopsis)

BLAST of Spo22399.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731321302\|ref\|XP_010671279.1\|	2.1e-76	93.5	PREDICTED: probable ribonuclea...	[more]
gi\|225455163\|ref\|XP_002268478.1\|	6.9e-67	79.2	PREDICTED: probable ribonuclea...	[more]
gi\|224132544\|ref\|XP_002321344.1\|	1.1e-64	77.9	hypothetical protein POPTR_001...	[more]
gi\|118482082\|gb\|ABK92972.1\|	1.4e-64	77.2	unknown [Populus trichocarpa]	[more]
gi\|1000979288\|ref\|XP_002513218.2\|	2.7e-63	75.9	PREDICTED: probable ribonuclea...	[more]

BLAST of Spo22399.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8CS50_BETVU	1.5e-76	93.5	Uncharacterized protein OS=Bet...	[more]
B9IDE0_POPTR	7.7e-65	77.9	Ribonuclease P family protein ...	[more]
A9P9B9_POPTR	1.0e-64	77.2	Putative uncharacterized prote...	[more]
A0A058ZZ57_EUCGR	7.2e-63	74.0	Uncharacterized protein OS=Euc...	[more]
A0A058ZZZ7_EUCGR	9.4e-63	74.6	Uncharacterized protein OS=Euc...	[more]

BLAST of Spo22399.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
POP5_ARATH	2.2e-52	65.1	Probable ribonuclease P/MRP pr...	[more]
POP5_DICDI	1.3e-9	32.4	Probable ribonuclease P/MRP pr...	[more]

BLAST of Spo22399.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G04635.1	1.2e-53	65.1	ribonuclease P family protein ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002759	Ribonuclease P/MRP protein subunit	PFAM	PF01900	RNase_P_Rpp14	coord: 7..114 score: 5.3
IPR016819	Ribonuclease P/MRP protein subunit Pop5	PIR	PIRSF023803	RNase_P	coord: 1..153 score: 5.6
None	No IPR available	unknown	Coil	Coil	coord: 135..154 scor
None	No IPR available	PANTHER	PTHR10993	OCTANOYLTRANSFERASE	coord: 2..153 score: 5.1
None	No IPR available	unknown	SSF160350	Rnp2-like	coord: 1..118 score: 7.85

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0061025	membrane fusion
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0006499	N-terminal protein myristoylation
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0032482	Rab protein signal transduction
biological_process	GO:0006810	transport
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0016049	cell growth
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0005768	endosome
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005773	vacuole
cellular_component	GO:0030677	ribonuclease P complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0004540	ribonuclease activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0004526	ribonuclease P activity
molecular_function	GO:0019003	GDP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo15782	0.71	Barchart \| Table
Spo04682	0.67	Barchart \| Table
Spo22894	0.67	Barchart \| Table
Spo09940	0.66	Barchart \| Table
Spo02513	0.66	Barchart \| Table
Spo04104	0.66	Barchart \| Table
Spo05640	0.66	Barchart \| Table
Spo21132	0.66	Barchart \| Table
Spo27030	0.66	Barchart \| Table
Spo17755	0.66	Barchart \| Table
Spo12107	0.65	Barchart \| Table
Spo10661	0.65	Barchart \| Table