Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCACGCATGGATAGGGGAGGATTTTGCCTACATCACAAGAAAAAGAGGTCAAGGAATTCCAGATATGGAAGAGGAGCGGAAAATCCGGAGAGAGCTTCAACTTCCAGAGTTCAATGGAGTTAATCCCGAGGGTTGGATTCTGGAATTGGAGGATACATTCCATTTTTTCCGGCTTAATGAGGAGGCGAAGTTAAAGGCTGCCATTATAACACTTGACGGAGACGCGCTACAGTGGTTCCAATGGGAACATCAGCGGTGGCCGTTTAATGACTGGCATGAATTGAAGAGCCAGGTGGTGCGACGCTTTGGTTTTTCACGACAAACTCCGAAAAAGCTCAACGGCAAGGCAGAACACCAGAATTTCTCCTCGAGTCAAGTCTGTGGTGGACTGCCAATGTTTATAGAAGCTATGGTCGGCAGTCAAGGCAATTATCATTCACCGTCTGAGAACCATAAAAAGGAGGCCAAGCCAATAGATCTGATGGAGGAAGAAAGAGAGGTGGTGAGTATGAGTGAGGTTCATTTAACAACCACTGACTTTCAAACTTCATGTGAGAAAGAGTCCGGTAGCCTACTTACAATGGAGTCTTTGGCTATACCTGGTAGTACGTTACCGGCGAAGGCGACGCTAGTAACATCAGATTTGGAGGAAATAAGGTATGGAGGAAATAAGGTATGGAGGAACAGGTGGAGGGAACTTTTTTGGTGGGTTTAATGGTGGAGGTCGAGTTGGGTGCGAATTTGTTGGTAGTCTGGCGGAGGAAGTGGTGGGAGGACATGTTGATGGACGGAAAAACATTCTCATCGGCAACGACCATAGTGATGGAGGAATATTCGAGAAAGGAGGAGCCGGAGGTAGTGGTTCCGGCGGTGGTCCTGGCCTTTTGGCCGGCAATTGTAAGATTGGTGGTCGAATTCCAACCTACGGTGGACTGATTAGGGAAGATTATGGATTCTTCAAAGGTGGATCTGAAGCTAGTGGCTCCTTTGGAGATCTGGGTTTCGCCGGCAGAGTTGTGGGTGGTGATTATGGTGTTTTAACCGGCGGAGAAGAGGAGTTTGTCGAGGGTCACACCGATTCGAGTGCAACTGGTGATGGCCCGAGCAACGACGTACCAGTAGGTGGTGCTGTGCACCAGCAGCTTCAAGAAATCTTTCAAAAGATTCCAGAAATGGAGATTAGAAAAAAAGCGTATGGGAGAAGATATGCCGAGTCATTGAACAGCTTGAGGAGGAAGCTAAATGTAGCTGATGCAATTAGTAAGGGCAATGTTGTAATTACTCAAGAAAGGCACTGCCAGGCCCAAATTTCTGATCCACTTTCTCTCCTCTACATCTACCTAATCAACCCAACCCAGTTCTAGAGGTCAACACTCCTTCTAACTTCAAGTTTAGACCAACTAGTATAGGACACGTTTCTGGGCCATCAGACTTAAATCTATCTCAGCCCAATCATCTTTAAACCCATTCTTTTTCCCAACTTTTCCAGCCCACAAACTCCCAATTTTCTGATTTTTTCTTCCACATCTAAATTCACTTCTTTAGTACAAGTTTCTACACCCAAACCATTCAGCCCTTCTCTTTTTAATTCCCTCAACCCACAGCCTTTCCATCTCACTTCAGAAAATTCCAACTTCAACCAATTTTTACTTCCACCCTATGACAACTCCAAGGCTAACTTTTTCTTAGCTACACCACCAAAGGAAGTACAAGTACTCACCAATGAGGAGCTTGAACGCCAGTGGAAGCCGGGCATCAATTCTCACACGGACATTGCTAATTGTTGCCAAGGCCGGGAATTTTGTGCTGATTACTATCCACCTTGAGGACAAGGTGGAAGTTTGGGGGGCCGGTAATGCAATGAACTGATATTATGGAGGGGTACTTTAGGAAATAGCTATTTAAGTTAGTACAAGCAGATTGGGGAACAAGTTAGGGGTTAGTCAGGGAGGTAGTACTATATATATAGGCAGCTGTAGAGAAGGAATGTTATGTTGAATATTGTTGAGGAATTTGGTTGAGCTTTTAAGAGCTCATTGGGAGAGAAATCAAGCCTCTCGAATGCTTGAATATCAGTTACTTGTGTTTTCAGTTTATTAATCAAATTTTCATTAGTTTCTTGATTTATGGTCTGTTATCTATGCTAATTCATAGCAGGTAAGCAGTAAAATTCTCTTTTTTTTGTGCCAATAGGATCCGTTATATCCTAAATGCAATGATCAAACTTGGTTGAAAGACTATGCTTATTGAACTCATGTACTCTGCAAAAATTTCCAGGGTTTCGAGGCTTATGTTGGACTGTTGTTGCTTCAAACAGCATTTGTTGGAGTTGTATCCGAATGGCAGGTGAGCTACCTTGTCTCTCTGCGTATTTTACAGAGACGGATAATAGGGTTGCATTAAGCATCTTCTTAATACTCATGCTTCATATTTTGACGCCATTATGAAATAGTGACAACTGACAAGTACCTTTGACAGGTCGTTTTTTGTGGATTTCTTCTGGTTTTAATGGCAATTGGGAATTTCGCAAATACGGTGCAGACTTTACTCGTCAAATCACGGTTTAAGGCAAAGATGAAAAGGACTAAAAGTAAGCAGCAGTTAGATTAGAGAAGGCTTTTCCAAAAGTTCAGTAGTCTCATACTCCCTTTACTTCTTAATTATATCCTTGGTCTGTTAGCTTTGTGTTTCTCAAGATTCTTTTTAATGGAGTTTAGAATTGTACACATTGTTTTATAGCAGATTTTACACCCCCTCCGCCCGAAAAAAATAAGAAAAACAGAGGTAATTATGTAAAAGTTTTCTGTCTTTACCACAAGTTCGAATATTTGTATTGTTTAGCAGATTGCCTGAATTGGTCTGTATTTGTCAATAATAAGATGGGATGATCCCCTATATTCAATTTTGATTGATCCACTCTCTATTTCTTCCTAATCTTTCTCAAAATTGATCATTGAAATCCCGAAAATGCTCTCACTATGTTCGTGGTTCTTGTAAAATTCTCAGCATGAATTCATGAAACACCTTTAAACAATCTGAAGATGCAAACAAGTTGATGTACTGAGGGCTTGAGCAGAGCCCGAGGGTTTGACTCTTGTACCG ATGCACGCATGGATAGGGGAGGATTTTGCCTACATCACAAGAAAAAGAGGTCAAGGAATTCCAGATATGGAAGAGGAGCGGAAAATCCGGAGAGAGCTTCAACTTCCAGAGTTCAATGGAGTTAATCCCGAGGGTTGGATTCTGGAATTGGAGGATACATTCCATTTTTTCCGGCTTAATGAGGAGGCGAAGTTAAAGGCTGCCATTATAACACTTGACGGAGACGCGCTACAGTGGTTCCAATGGGAACATCAGCGGTGGCCGTTTAATGACTGGCATGAATTGAAGAGCCAGGTGGTGCGACGCTTTGGTTTTTCACGACAAACTCCGAAAAAGCTCAACGGCAAGGCAGAACACCAGAATTTCTCCTCGAGTCAAGTCTGTGGTGGACTGCCAATGTTTATAGAAGCTATGGTCGGCAGTCAAGGCAATTATCATTCACCGTCTGAGAACCATAAAAAGGAGGCCAAGCCAATAGATCTGATGGAGGAAGAAAGAGAGGTGGTGAGTATGAGTGAGGTTCATTTAACAACCACTGACTTTCAAACTTCATGTGAGAAAGAGTCCGGTAGCCTACTTACAATGGAGTCTTTGGCTATACCTGGTAGTACGTTACCGGCGAAGGCGACGCTAGTAACATCAGATTTGGAGGAAATAAGTCTGGCGGAGGAAGTGGTGGGAGGACATGTTGATGGACGGAAAAACATTCTCATCGGCAACGACCATAGTGATGGAGGAATATTCGAGAAAGGAGGAGCCGGAGGTAGTGGTTCCGGCGGTGGTCCTGGCCTTTTGGCCGGCAATTGTAAGATTGGTGGTCGAATTCCAACCTACGGTGGACTGATTAGGGAAGATTATGGATTCTTCAAAGGTGGATCTGAAGCTAGTGGCTCCTTTGGAGATCTGGGTTTCGCCGGCAGAGTTGTGGGTGGTGATTATGGTGTTTTAACCGGCGGAGAAGAGGAGTTTGTCGAGGGTCACACCGATTCGAGTGCAACTGGTGATGGCCCGAGCAACGACGTACCAGTAGGTGGTGCTGTGCACCAGCAGCTTCAAGAAATCTTTCAAAAGATTCCAGAAATGGAGATTAGAAAAAAAGCGTATGGGAGAAGATATGCCGAGTCATTGAACAGCTTGAGGAGGAAGCTAAATGTAGCTGATGCAATTAGTAAGGGCAATGTTGGTTTCGAGGCTTATGTTGGACTGTTGTTGCTTCAAACAGCATTTGTTGGAGTTGTATCCGAATGGCAGGTCGTTTTTTGTGGATTTCTTCTGGTTTTAATGGCAATTGGGAATTTCGCAAATACGGTGCAGACTTTACTCGTCAAATCACGGTTTAAGGCAAAGATGAAAAGGACTAAAAGTAAGCAGCAGTTAGATTAGAGAAGGCTTTTCCAAAAGTTCAGTAGTCTCATACTCCCTTTACTTCTTAATTATATCCTTGGTCTGTTAGCTTTGTGTTTCTCAAGATTCTTTTTAATGGAGTTTAGAATTGTACACATTGTTTTATAGCAGATTTTACACCCCCTCCGCCCGAAAAAAATAAGAAAAACAGAGGTAATTATGTAAAAGTTTTCTGTCTTTACCACAAGTTCGAATATTTGTATTGTTTAGCAGATTGCCTGAATTGGTCTGTATTTGTCAATAATAAGATGGGATGATCCCCTATATTCAATTTTGATTGATCCACTCTCTATTTCTTCCTAATCTTTCTCAAAATTGATCATTGAAATCCCGAAAATGCTCTCACTATGTTCGTGGTTCTTGTAAAATTCTCAGCATGAATTCATGAAACACCTTTAAACAATCTGAAGATGCAAACAAGTTGATGTACTGAGGGCTTGAGCAGAGCCCGAGGGTTTGACTCTTGTACCG ATGCACGCATGGATAGGGGAGGATTTTGCCTACATCACAAGAAAAAGAGGTCAAGGAATTCCAGATATGGAAGAGGAGCGGAAAATCCGGAGAGAGCTTCAACTTCCAGAGTTCAATGGAGTTAATCCCGAGGGTTGGATTCTGGAATTGGAGGATACATTCCATTTTTTCCGGCTTAATGAGGAGGCGAAGTTAAAGGCTGCCATTATAACACTTGACGGAGACGCGCTACAGTGGTTCCAATGGGAACATCAGCGGTGGCCGTTTAATGACTGGCATGAATTGAAGAGCCAGGTGGTGCGACGCTTTGGTTTTTCACGACAAACTCCGAAAAAGCTCAACGGCAAGGCAGAACACCAGAATTTCTCCTCGAGTCAAGTCTGTGGTGGACTGCCAATGTTTATAGAAGCTATGGTCGGCAGTCAAGGCAATTATCATTCACCGTCTGAGAACCATAAAAAGGAGGCCAAGCCAATAGATCTGATGGAGGAAGAAAGAGAGGTGGTGAGTATGAGTGAGGTTCATTTAACAACCACTGACTTTCAAACTTCATGTGAGAAAGAGTCCGGTAGCCTACTTACAATGGAGTCTTTGGCTATACCTGGTAGTACGTTACCGGCGAAGGCGACGCTAGTAACATCAGATTTGGAGGAAATAAGTCTGGCGGAGGAAGTGGTGGGAGGACATGTTGATGGACGGAAAAACATTCTCATCGGCAACGACCATAGTGATGGAGGAATATTCGAGAAAGGAGGAGCCGGAGGTAGTGGTTCCGGCGGTGGTCCTGGCCTTTTGGCCGGCAATTGTAAGATTGGTGGTCGAATTCCAACCTACGGTGGACTGATTAGGGAAGATTATGGATTCTTCAAAGGTGGATCTGAAGCTAGTGGCTCCTTTGGAGATCTGGGTTTCGCCGGCAGAGTTGTGGGTGGTGATTATGGTGTTTTAACCGGCGGAGAAGAGGAGTTTGTCGAGGGTCACACCGATTCGAGTGCAACTGGTGATGGCCCGAGCAACGACGTACCAGTAGGTGGTGCTGTGCACCAGCAGCTTCAAGAAATCTTTCAAAAGATTCCAGAAATGGAGATTAGAAAAAAAGCGTATGGGAGAAGATATGCCGAGTCATTGAACAGCTTGAGGAGGAAGCTAAATGTAGCTGATGCAATTAGTAAGGGCAATGTTGGTTTCGAGGCTTATGTTGGACTGTTGTTGCTTCAAACAGCATTTGTTGGAGTTGTATCCGAATGGCAGGTCGTTTTTTGTGGATTTCTTCTGGTTTTAATGGCAATTGGGAATTTCGCAAATACGGTGCAGACTTTACTCGTCAAATCACGGTTTAAGGCAAAGATGAAAAGGACTAAAAGTAAGCAGCAGTTAGATTAG MHAWIGEDFAYITRKRGQGIPDMEEERKIRRELQLPEFNGVNPEGWILELEDTFHFFRLNEEAKLKAAIITLDGDALQWFQWEHQRWPFNDWHELKSQVVRRFGFSRQTPKKLNGKAEHQNFSSSQVCGGLPMFIEAMVGSQGNYHSPSENHKKEAKPIDLMEEEREVVSMSEVHLTTTDFQTSCEKESGSLLTMESLAIPGSTLPAKATLVTSDLEEISLAEEVVGGHVDGRKNILIGNDHSDGGIFEKGGAGGSGSGGGPGLLAGNCKIGGRIPTYGGLIREDYGFFKGGSEASGSFGDLGFAGRVVGGDYGVLTGGEEEFVEGHTDSSATGDGPSNDVPVGGAVHQQLQEIFQKIPEMEIRKKAYGRRYAESLNSLRRKLNVADAISKGNVGFEAYVGLLLLQTAFVGVVSEWQVVFCGFLLVLMAIGNFANTVQTLLVKSRFKAKMKRTKSKQQLD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21956.1 vs. NCBI nr
Match: gi|731346560|ref|XP_010684517.1| (PREDICTED: uncharacterized protein LOC104899081 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 243.4 bits (620), Expect = 7.600e-61 Identity = 171/389 (43.96%), Postives = 209/389 (53.73%), Query Frame = 1
BLAST of Spo21956.1 vs. NCBI nr
Match: gi|731318549|ref|XP_010669787.1| (PREDICTED: keratin, type I cytoskeletal 9-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 165.2 bits (417), Expect = 2.600e-37 Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 1
BLAST of Spo21956.1 vs. NCBI nr
Match: gi|870860211|gb|KMT11574.1| (hypothetical protein BVRB_5g108880 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 161.8 bits (408), Expect = 2.900e-36 Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1
BLAST of Spo21956.1 vs. NCBI nr
Match: gi|731372571|ref|XP_010666388.1| (PREDICTED: uncharacterized protein LOC104883545 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 161.0 bits (406), Expect = 5.000e-36 Identity = 130/351 (37.04%), Postives = 168/351 (47.86%), Query Frame = 1
BLAST of Spo21956.1 vs. NCBI nr
Match: gi|870850668|gb|KMT02734.1| (hypothetical protein BVRB_8g193200 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 154.8 bits (390), Expect = 3.600e-34 Identity = 73/158 (46.20%), Postives = 100/158 (63.29%), Query Frame = 1
BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CHJ4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g108880 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 2.000e-36 Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1
BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRV9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g193200 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 2.500e-34 Identity = 73/158 (46.20%), Postives = 100/158 (63.29%), Query Frame = 1
BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBW8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g092900 PE=3 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 6.300e-30 Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 1
BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RUC2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_027750 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 2.100e-25 Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1
BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QHR5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_177680 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23 Identity = 64/122 (52.46%), Postives = 82/122 (67.21%), Query Frame = 1
BLAST of Spo21956.1 vs. TAIR (Arabidopsis)
Match: AT1G33230.1 (TMPIT-like protein) HSP 1 Score: 93.6 bits (231), Expect = 3.400e-19 Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1
BLAST of Spo21956.1 vs. TAIR (Arabidopsis)
Match: AT4G10430.1 (TMPIT-like protein) HSP 1 Score: 88.2 bits (217), Expect = 1.400e-17 Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1
BLAST of Spo21956.1 vs. TAIR (Arabidopsis)
Match: AT1G67020.1 (unknown protein) HSP 1 Score: 51.2 bits (121), Expect = 2.000e-6 Identity = 22/81 (27.16%), Postives = 41/81 (50.62%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21956.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21956.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo21956.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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