Spo21946 (gene)

Overview
NameSpo21946
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionNAD(P)H-quinone oxidoreductase subunit 2, chloroplastic (1.6.5.-) (NAD(P)H dehydrogenase, subunit 2) (NADH-plastoquinone oxidoreductase subunit 2)
LocationSpoScf_00397 : 237334 .. 238399 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAACTAAGCCCTCTCGGGAACTCGCTTAAGAATAAGAACGAGGAATCTCATGTAAATACCATGCTATTCATGGAGATTCCGTAAATATTCCATTTCAAAAACAGAAACAATTGGTATTTTTTTGGAGATTAGATGCAGTTACTAATTCATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTGATTTTTCCAGAATGTATCCTAATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCATAACAGCCCTGTTGTTCCGATGGAGAGAAGAACCTATGATTAGCTTTTCAGGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGAGTACATTGAATGTACAGAAATGGCTCTAACAGAGTTTCTGTTATTCATATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAACGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGTGGAGAGATCGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCGGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTTCGAGAAATTCCTACCTCTCTATCTATCTCTGAGATGTTTGGATTTTTCAAAACTCCATGGACATGCAGAAGAGAAATGCTATTCCCACTCGGACCAAGACATAACTTTTACTTGTTCAAATAA

mRNA sequence

ATGGATCAACTAAGCCCTCTCGGGAACTCGCTTAAGAATAAGAACGAGGAATCTCATGTAAATACCATGCTATTCATGGAGATTCCTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGTGGAGAGATCGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCGGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTTCGAGAAATTCCTACCTCTCTATCTATCTCTGAGATGTTTGGATTTTTCAAAACTCCATGGACATGCAGAAGAGAAATGCTATTCCCACTCGGACCAAGACATAACTTTTACTTGTTCAAATAA

Coding sequence (CDS)

ATGGATCAACTAAGCCCTCTCGGGAACTCGCTTAAGAATAAGAACGAGGAATCTCATGTAAATACCATGCTATTCATGGAGATTCCTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGTGGAGAGATCGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCGGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTTCGAGAAATTCCTACCTCTCTATCTATCTCTGAGATGTTTGGATTTTTCAAAACTCCATGGACATGCAGAAGAGAAATGCTATTCCCACTCGGACCAAGACATAACTTTTACTTGTTCAAATAA

Protein sequence

MDQLSPLGNSLKNKNEESHVNTMLFMEIPLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFKTPWTCRREMLFPLGPRHNFYLFK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21946.1Spo21946.1mRNA


Homology
[Close]
BLAST of Spo21946.1 vs. NCBI nr
Match: gi|628819152|gb|AHY80585.1| (NADH-plastoquinone oxidoreductase subunit 2 (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 297.0 bits (759), Expect = 2.200e-77
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILV+GFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVYGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREMLFPLGPRHNFYLFK
Sbjct: 281 TPWTCRREMLFPLGPRHNFYLFK 303
[Close]
BLAST of Spo21946.1 vs. NCBI nr
Match: gi|225268|prf||1211235DD (NADH dehydrogenase 2-like ORF 180)

HSP 1 Score: 290.8 bits (743), Expect = 1.600e-75
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 38  LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 97

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 98  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 157

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREML PLGPR NFYLFK
Sbjct: 158 TPWTCRREMLSPLGPRQNFYLFK 180
[Close]
BLAST of Spo21946.1 vs. NCBI nr
Match: gi|814071999|ref|YP_009123570.1| (NADH-plastoquinone oxidoreductase subunit 2 (plastid) [Physalis peruviana])

HSP 1 Score: 290.8 bits (743), Expect = 1.600e-75
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREML PLGPR NFYLFK
Sbjct: 281 TPWTCRREMLSPLGPRQNFYLFK 303
[Close]
BLAST of Spo21946.1 vs. NCBI nr
Match: gi|1002165453|ref|YP_009235584.1| (NdhB (chloroplast) [Cynanchum wilfordii])

HSP 1 Score: 271.6 bits (693), Expect = 9.700e-70
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSIS+MFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISKMFGFFK 280

Query: 150 TPWTCRREMLFPLGP 165
           TPWTCRREML PL P
Sbjct: 281 TPWTCRREMLSPLSP 295
[Close]
BLAST of Spo21946.1 vs. NCBI nr
Match: gi|523582323|gb|AGQ50376.1| (NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Rumex acetosa])

HSP 1 Score: 271.6 bits (693), Expect = 9.700e-70
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVR+IP SLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVRKIPRSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGP 165
           TPWTCRREML PL P
Sbjct: 281 TPWTCRREMLSPLSP 295
[Close]
BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Match: A0A023ZQY2_BETVU (NADH-plastoquinone oxidoreductase subunit 2 OS=Beta vulgaris subsp. vulgaris GN=ndhB PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.500e-77
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILV+GFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVYGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREMLFPLGPRHNFYLFK
Sbjct: 281 TPWTCRREMLFPLGPRHNFYLFK 303
[Close]
BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Match: A0A0D3RWC7_9SOLA (NADH-plastoquinone oxidoreductase subunit 2 OS=Iochroma calycinum GN=ndhB PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.100e-75
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREML PLGPR NFYLFK
Sbjct: 281 TPWTCRREMLSPLGPRQNFYLFK 303
[Close]
BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Match: A0A0C5C0I1_9SOLA (NdhB protein OS=Physalis peruviana GN=ndhB PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.100e-75
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREML PLGPR NFYLFK
Sbjct: 281 TPWTCRREMLSPLGPRQNFYLFK 303
[Close]
BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Match: M1B8G4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015298 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.500e-74
Identity = 138/141 (97.87%), Postives = 138/141 (97.87%), Query Frame = 1 

		  

Query: 32  SYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQ 91
           SYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQ
Sbjct: 83  SYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQ 142

Query: 92  MYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFKTP 151
           MYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFKTP
Sbjct: 143 MYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFKTP 202

Query: 152 WTCRREMLFPLGPRHNFYLFK 173
           WTCRREML PLGPR NFYLFK
Sbjct: 203 WTCRREMLSPLGPRQNFYLFK 223
[Close]
BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Match: A0A0V0INN5_SOLCH (Putative NADH-plastoquinone oxidoreductase subunit 2-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.800e-71
Identity = 134/143 (93.71%), Postives = 136/143 (95.10%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGG+IELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGKIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLS AP HQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSLAPFHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREML PLGPR NF L +
Sbjct: 281 TPWTCRREMLSPLGPRQNFLLLQ 303
[Close]
BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Match: NU2C1_COFAR (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.500e-70
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFP 162
           TPWTCRRE+L P
Sbjct: 281 TPWTCRREILSP 292
[Close]
BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Match: NU2C2_COFAR (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Coffea arabica GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.300e-69
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREM 159
           TPWTCRRE+
Sbjct: 281 TPWTCRREI 289
[Close]
BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Match: NU2C2_GOSHI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Gossypium hirsutum GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.600e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259
[Close]
BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Match: NU2C2_CARPA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Carica papaya GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.600e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259
[Close]
BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Match: NU2C2_VITVI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Vitis vinifera GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.600e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259
[Close]
BLAST of Spo21946.1 vs. TAIR (Arabidopsis)
Match: ATCG00890.1 (NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 197.2 bits (500), Expect = 8.200e-51
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKD+RSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 38  LCSYLLSGYTKKDIRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 97

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
           TQMYNSPGISIALIFITVGIGFKLS APSHQWTPDVYEG
Sbjct: 98  TQMYNSPGISIALIFITVGIGFKLSLAPSHQWTPDVYEG 136
[Close]
BLAST of Spo21946.1 vs. TAIR (Arabidopsis)
Match: ATCG01250.1 (NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 197.2 bits (500), Expect = 8.200e-51
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKD+RSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 38  LCSYLLSGYTKKDIRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 97

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
           TQMYNSPGISIALIFITVGIGFKLS APSHQWTPDVYEG
Sbjct: 98  TQMYNSPGISIALIFITVGIGFKLSLAPSHQWTPDVYEG 136
[Close]
BLAST of Spo21946.1 vs. TAIR (Arabidopsis)
Match: ATMG00285.1 (NADH dehydrogenase 2A)

HSP 1 Score: 75.9 bits (185), Expect = 2.800e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGE--IELQEIVNGL 89
           LC Y+++   +K   S EA +KYL++G  SS IL+ G S +YGS+G     +L +I+ G 
Sbjct: 157 LCFYVIAASKRKSEFSTEAGSKYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGY 216

Query: 90  INTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
             T    S GI + ++ I VG  FK++  P H W PD+YEG
Sbjct: 217 EITGA-RSSGIFMGILSIAVGFLFKITAVPFHMWAPDIYEG 256
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BLAST of Spo21946.1 vs. TAIR (Arabidopsis)
Match: ATMG01320.1 (NADH dehydrogenase 2B)

HSP 1 Score: 75.9 bits (185), Expect = 2.800e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 1 

		  

Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGE--IELQEIVNGL 89
           LC Y+++   +K   S EA +KYL++G  SS IL+ G S +YGS+G     +L +I+ G 
Sbjct: 157 LCFYVIAASKRKSEFSTEAGSKYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGY 216

Query: 90  INTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
             T    S GI + ++ I VG  FK++  P H W PD+YEG
Sbjct: 217 EITGA-RSSGIFMGILSIAVGFLFKITAVPFHMWAPDIYEG 256
The following BLAST results are available for this feature:
BLAST of Spo21946.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|628819152|gb|AHY80585.1|2.2e-7799.3NADH-plastoquinone oxidoreduct... [more]
gi|225268|prf||1211235DD1.6e-7597.9NADH dehydrogenase 2-like ORF ... [more]
gi|814071999|ref|YP_009123570.1|1.6e-7597.9NADH-plastoquinone oxidoreduct... [more]
gi|1002165453|ref|YP_009235584.1|9.7e-7097.0NdhB (chloroplast) [Cynanchum ... [more]
gi|523582323|gb|AGQ50376.1|9.7e-7097.0NADH-plastoquinone oxidoreduct... [more]
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BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A023ZQY2_BETVU1.5e-7799.3NADH-plastoquinone oxidoreduct... [more]
A0A0D3RWC7_9SOLA1.1e-7597.9NADH-plastoquinone oxidoreduct... [more]
A0A0C5C0I1_9SOLA1.1e-7597.9NdhB protein OS=Physalis peruv... [more]
M1B8G4_SOLTU4.5e-7497.8Uncharacterized protein OS=Sol... [more]
A0A0V0INN5_SOLCH2.8e-7193.7Putative NADH-plastoquinone ox... [more]
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BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NU2C1_COFAR1.5e-7097.7NAD(P)H-quinone oxidoreductase... [more]
NU2C2_COFAR1.3e-6998.4NAD(P)H-quinone oxidoreductase... [more]
NU2C2_GOSHI1.6e-51100.NAD(P)H-quinone oxidoreductase... [more]
NU2C2_CARPA1.6e-51100.NAD(P)H-quinone oxidoreductase... [more]
NU2C2_VITVI1.6e-51100.NAD(P)H-quinone oxidoreductase... [more]
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BLAST of Spo21946.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
ATCG00890.18.2e-5196.9NADH-Ubiquinone/plastoquinone ... [more]
ATCG01250.18.2e-5196.9NADH-Ubiquinone/plastoquinone ... [more]
ATMG00285.12.8e-1440.5NADH dehydrogenase 2A[more]
ATMG01320.12.8e-1440.5NADH dehydrogenase 2B[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitPFAMPF00361Proton_antipo_Mcoord: 24..128
score: 1.9
NoneNo IPR availablePANTHERPTHR22773NADH DEHYDROGENASEcoord: 30..128
score: 2.5
NoneNo IPR availablePANTHERPTHR22773:SF86NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 2 A, CHLOROPLASTIC-RELATEDcoord: 30..128
score: 2.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006554 lysine catabolic process
biological_process GO:0009853 photorespiration
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0006814 sodium ion transport
biological_process GO:0042254 ribosome biogenesis
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0015979 photosynthesis
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0009522 photosystem I
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0010287 plastoglobule
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0030076 light-harvesting complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0005524 ATP binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008777 acetylornithine deacetylase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
RNA-Seq Expression