Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTTGGAAGGACGGGATGAATCGAGATCAGTCAATAATCTTCAAGTTGATCCTGTTAAAGAAGCTGAGGTACAATGAATAACAAAGTCTAATGCTTAAGTTTTTAACATCTAATGCCTGTTGGTTGCTAGAGTCTTTCATAAGCATGTTTTTATGTGTCCGTATCTTTCATAGTCCTTATTGTTTTCAATCTATAGGAACGATGGTGTGACAGTAGATGAAGCGTTGACAAAATCACGACAAAGCTGCAGTCAAGGCAAGTAGCAGCTATAAAGAGACAGAGGGCAGTTTCATACGCCACCACTCAACATGTAAACTATCAGCTTACTCAGATATGCATTGTCCTGCAGAAATTTCTTGTACTACAGTTTATTTGATCATTAAATTTGCTATTGCAGCAATTCAGAGGCAGCCCCAATTTAAACCCTGGGAAGAACAAACCATTTACCACTACTCGGCCTCTAGAACTTGATAAGAACATCTTTGGTTGGAGTTGGTTGGATCGTTGGATGGCTAGCAAACCATGGGAAAGTAGGTTGTCACAGGCTTGCTTGGTTGTGATGCCTTTCCAAGAGAAGTATGATTTTTAGGACTAGGACTTGTCATAGGCTTGCTTGGCTGTGATGCCTTCAACACATCATTGGTAGAGGATTATCTACAGTTGATGGGGGGATGGCATTTTTTGGTCTTAGAGATTGAGAGCATTCTAGGAATTGATTTGTATTGTTAAGTGTACTTATTGATTTATTTTTGTAATGATTAAGTTGGTTTTAGTTAAGAGTAAGTTATTTTTAGTTTAACTTTTGTTATATTTAGTTATGAAATAAAATACTCCGTACTTGAGTTACATTGTTTTGCATTGAAGTCATTTTTTGTTTTAGT ATGGCTTTGGAAGGACGGGATGAATCGAGATCAGTCAATAATCTTCAAGTTGATCCTGTTAAAGAAGCTGAGTCAAGGCAAGTAGCAGCTATAAAGAGACAGAGGGCAGTTTCATACGCCACCACTCAACATCAATTCAGAGGCAGCCCCAATTTAAACCCTGGGAAGAACAAACCATTTACCACTACTCGGCCTCTAGAACTTGATAAGAACATCTTTGGTTGGAGTTGGTTGGATCGTTGGATGGCTAGCAAACCATGGGAAAGTAGGTTGTCACAGGCTTGCTTGGTTGTGATGCCTTTCCAAGAGAAGTATGATTTTTAGGACTAGGACTTGTCATAGGCTTGCTTGGCTGTGATGCCTTCAACACATCATTGGTAGAGGATTATCTACAGTTGATGGGGGGATGGCATTTTTTGGTCTTAGAGATTGAGAGCATTCTAGGAATTGATTTGTATTGTTAAGTGTACTTATTGATTTATTTTTGTAATGATTAAGTTGGTTTTAGTTAAGAGTAAGTTATTTTTAGTTTAACTTTTGTTATATTTAGTTATGAAATAAAATACTCCGTACTTGAGTTACATTGTTTTGCATTGAAGTCATTTTTTGTTTTAGT ATGGCTTTGGAAGGACGGGATGAATCGAGATCAGTCAATAATCTTCAAGTTGATCCTGTTAAAGAAGCTGAGTCAAGGCAAGTAGCAGCTATAAAGAGACAGAGGGCAGTTTCATACGCCACCACTCAACATCAATTCAGAGGCAGCCCCAATTTAAACCCTGGGAAGAACAAACCATTTACCACTACTCGGCCTCTAGAACTTGATAAGAACATCTTTGGTTGGAGTTGGTTGGATCGTTGGATGGCTAGCAAACCATGGGAAAGTAGGTTGTCACAGGCTTGCTTGGTTGTGATGCCTTTCCAAGAGAAGTATGATTTTTAG MALEGRDESRSVNNLQVDPVKEAESRQVAAIKRQRAVSYATTQHQFRGSPNLNPGKNKPFTTTRPLELDKNIFGWSWLDRWMASKPWESRLSQACLVVMPFQEKYDF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21859.1 vs. NCBI nr
Match: gi|902203494|gb|KNA14573.1| (hypothetical protein SOVF_106230 isoform B [Spinacia oleracea]) HSP 1 Score: 153.7 bits (387), Expect = 1.800e-34 Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1
BLAST of Spo21859.1 vs. NCBI nr
Match: gi|902203495|gb|KNA14574.1| (hypothetical protein SOVF_106230 isoform C [Spinacia oleracea]) HSP 1 Score: 153.7 bits (387), Expect = 1.800e-34 Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1
BLAST of Spo21859.1 vs. NCBI nr
Match: gi|902203493|gb|KNA14572.1| (hypothetical protein SOVF_106230 isoform A [Spinacia oleracea]) HSP 1 Score: 153.7 bits (387), Expect = 1.800e-34 Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1
BLAST of Spo21859.1 vs. NCBI nr
Match: gi|731348179|ref|XP_010685364.1| (PREDICTED: protein IQ-DOMAIN 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 120.2 bits (300), Expect = 2.300e-24 Identity = 65/111 (58.56%), Postives = 74/111 (66.67%), Query Frame = 1
BLAST of Spo21859.1 vs. NCBI nr
Match: gi|685299970|ref|XP_009140728.1| (PREDICTED: protein IQ-DOMAIN 1 [Brassica rapa]) HSP 1 Score: 81.6 bits (200), Expect = 8.900e-13 Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1
BLAST of Spo21859.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R721_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_106230 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 1.300e-34 Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1
BLAST of Spo21859.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6I5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_106230 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 1.300e-34 Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1
BLAST of Spo21859.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4Y6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_106230 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 1.300e-34 Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1
BLAST of Spo21859.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EPG7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g170430 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 1.600e-24 Identity = 65/111 (58.56%), Postives = 74/111 (66.67%), Query Frame = 1
BLAST of Spo21859.1 vs. UniProtKB/TrEMBL
Match: M4EZQ1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 6.200e-13 Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1
BLAST of Spo21859.1 vs. TAIR (Arabidopsis)
Match: AT2G26180.1 (IQ-domain 6) HSP 1 Score: 75.9 bits (185), Expect = 1.700e-14 Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1
BLAST of Spo21859.1 vs. TAIR (Arabidopsis)
Match: AT3G22190.1 (IQ-domain 5) HSP 1 Score: 58.9 bits (141), Expect = 2.200e-9 Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
BLAST of Spo21859.1 vs. TAIR (Arabidopsis)
Match: AT3G15050.1 (IQ-domain 10) HSP 1 Score: 53.9 bits (128), Expect = 7.000e-8 Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 1
BLAST of Spo21859.1 vs. TAIR (Arabidopsis)
Match: AT2G26410.1 (IQ-domain 4) HSP 1 Score: 50.8 bits (120), Expect = 5.900e-7 Identity = 28/80 (35.00%), Postives = 48/80 (60.00%), Query Frame = 1
BLAST of Spo21859.1 vs. TAIR (Arabidopsis)
Match: AT3G09710.2 (IQ-domain 1) HSP 1 Score: 50.4 bits (119), Expect = 7.700e-7 Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21859.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21859.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21859.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo21859.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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