Spo21790 (gene)

Overview
NameSpo21790
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 57134877 .. 57137478 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTGAGTTGGTTTACAGTGCAGCATATGATCTGCACAAAAAGAAAAAGGAAAAAAAATGAAGTGTAGAATTTAAGGGTATATGTGTGTCATTTTTCGGTTTTATTTTTTTATTTTTTAACTTCTCTTTCAGAAATTGTTCTTTGTAAGGAAACCTTGAATACAGTCAAAAGGCTATGACACTGGTTTTTGTGTTGTCGTCTTCAGCCTGACGGATTAATAGAAGTGAGTTGAATGTTTCAGCTGACTATATTTTCTATGGGAAAAGCGTAACTAGGTTTTTTTTTCGTTTTTCGCTGTATATACTACGAGTACATTAGAAGACGCAAAAACAAAGTAGAAGTTTGCTGAAACACCTGAAGATTGTATGAAAGTATTAACAAAAGAAGGCGATGCATGTTTTAGCAGCTATATTAGCCACTATTTTCCTCCCACATTTTTTTTTTGTTTTTTTGTTGTGACATTCAGAAAATGAACAAAAAAAAGAAAATATTGGAAAAATAATTAATCCGTCTACCTACAAAACGTAGTCATTGAAAAGTGGCAAACTCGTCTTCAATAGTACAAAAATTATACGGAGTATACACAATACAAAACCGATTAGTACAATATTTTTGAACATGCAGGTACCATAAAATCAACACAACAAGATGGAAAAATCATATACCTTGAATACTTGAATTCAACTATGAAAAAGAAGTTCTATAGTTAATGTATCGCGTAACAATATTACACTTGCCCCTGACCTAGCTATAGCAGCTAGAAAACATGGGATGGTGGCGTAAGTGTTGGGTTTGTTTATTCTTCTTGTCAAAAAAAAAAAAAAAAACTAAGAAAAATAAGTGCAATTTGGTTTCGGTTTCATATTATAACATGTAAGAATTTTCAATTGAAAACTTTATATTAATTTTATAATTTTATAGTCTTTACTTTTAGTAACTCTTTTGCTCAATTTTTTTTTTTTTGATCTATTCAAAGAATTGGCTATTTTTCATGAACTATTATATAATAGTAAATCCGGATCGTACATAAATTTATTTTGAAATCGAATAATGGCCATGATTGACTTTACAAATCAAGGATATATCATATATATATGTATACTGAATATTTATTTACACTGCTAAAAATAAAAGAATAATTACACAGCTAAAACACAAAAGGACTATTATGGTTGCTTCTTTATACAAAGGAGAGGATGGATAGACAATTCGTGGACTATGGACCGTGGTGCACATAGAGCTACGTGCACCAAAAGAACATGTGTGCATAAGTAAAAGAACACGACACTACGGCAAAAAAACATGCGATATAATATTTCACTTTTTTTATTATAAAAATAATTTATTATTTTACTATTTATTAAAACCTAAATAAAAAAAATACTCATGTTCTTTTCTCGTAACCATATGTTCTTTCAATTATATACTGTGTTCTTTTGGTGCACGTAGCTCTATGTGCACCATGGTCCACCTTCTAAATTGCGTTGGAATATTGGCCAACGACTAGTTTTTTTTTTTAAAAAAAAATTAGATGTTGATTAACAGTTTTTTAAATGATCAACAAAATACCTTGTAAAAAATGGGGTATTTGGCTTTGAAACGCGTGCACATAAACACCATGACCCTCCTTATTAATTCCTGGTTCTTGATTACCAAACTTGTTAATGTGTGGCAAACATAGAAATATATGTGTGGGAAGCAATGTTGTTGCTTCATTATACAAAGGAGAGGATGGTTGGAATATGGGCCAACGACTAGTTTTTTTTAAAAAAATTAAATGTTGTTTAACAGTGGTATATGGTGAAAATTTTAGATAATAGAGGGGCATATGGTGAAAAAATTACGCTCACTTAACAATATAGTCACGTCATGCAAGAAAATAAAACCTCAAAAATACACAATGAATCTAAAACTACAAGGGTATTTTTGGTAAATAAAGTTAAACCTCGCGCTATTTCATGAAAAACCGATAATTAAACCCCAACTCTCTCCAAAACCCCCAATTAGCTCCTGCCTCCTCCTCCCACCTCCGGAGTTTTAATTTCCCGCCTCTTAAAATCCTCCAACAAAGTGACCATATTGTATTTGCATCACCACCACTAGTCGGCGGCGCCTCTTCCAGTGGAGGAATTCCGATCACCTCTCTTTATCTGCCGCTGCTAGTTCGACAGTGTATAGCTTCTTTTCCTCATGCATTTTCTTTATTTTTCTATTTTGTATCCATTTTTTAGGATTTTTTTGTTGATTTTGTTTGTAATTATAGAGCCAAAAGGTGTTTCAATACATTCTATTGCCTGATATGATGTTTCAAATATTGAAATCTTGTTGTTGAATATAATTCTATTGAATTTTTCGGTGGCTTTGTTTTGATGTTGTTTTTATGTCTATGTATTCTATACACAGTTCATAACTTCTGTAACCGACTCGCCGGAGTGAACCACCAGGCAAGTAGGCGACCACCGTCGGTCACTAACCTCCACATTCGTGTACAAACTACCAACCACGACAAGCAGACGAGTAGATTGAAGGCTCGCCGTCGTCGCCGATTGAAGGAGAACGCTGCTCCGGTAGAACGGAGAACGACTCAACATCTCTAA

mRNA sequence

ATGAAATTGAGTTGGTTTACAGTGCAGCATATGATCTGCACAAAAAGAAAAAGGAAAAAAAATGAAGTTGACCATATTGTATTTGCATCACCACCACTAGTCGGCGGCGCCTCTTCCAGTGGAGGAATTCCGATCACCTCTCTTTATCTGCCGCTGCTAGTTCGACAGTTTCATAACTTCTGTAACCGACTCGCCGGAGTGAACCACCAGGCAAGTAGGCGACCACCGTCGGTCACTAACCTCCACATTCGTGTACAAACTACCAACCACGACAAGCAGACGAGTAGATTGAAGGCTCGCCGTCGTCGCCGATTGAAGGAGAACGCTGCTCCGGTAGAACGGAGAACGACTCAACATCTCTAA

Coding sequence (CDS)

ATGAAATTGAGTTGGTTTACAGTGCAGCATATGATCTGCACAAAAAGAAAAAGGAAAAAAAATGAAGTTGACCATATTGTATTTGCATCACCACCACTAGTCGGCGGCGCCTCTTCCAGTGGAGGAATTCCGATCACCTCTCTTTATCTGCCGCTGCTAGTTCGACAGTTTCATAACTTCTGTAACCGACTCGCCGGAGTGAACCACCAGGCAAGTAGGCGACCACCGTCGGTCACTAACCTCCACATTCGTGTACAAACTACCAACCACGACAAGCAGACGAGTAGATTGAAGGCTCGCCGTCGTCGCCGATTGAAGGAGAACGCTGCTCCGGTAGAACGGAGAACGACTCAACATCTCTAA

Protein sequence

MKLSWFTVQHMICTKRKRKKNEVDHIVFASPPLVGGASSSGGIPITSLYLPLLVRQFHNFCNRLAGVNHQASRRPPSVTNLHIRVQTTNHDKQTSRLKARRRRRLKENAAPVERRTTQHL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21790.1Spo21790.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo21790.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21790.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21790.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21790.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0050896 response to stimulus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0016602 CCAAT-binding factor complex
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo157030.70Barchart | Table
Spo216170.68Barchart | Table
Spo128900.67Barchart | Table
Spo015930.65Barchart | Table