Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTAAGGTTATGGTATATTCTAAATTTGAACCTTCAAATTCCAAAATCCAAAAGAAAAGAAAAAGACTGGACAATACGTGGTGGGTGCAGCACAAACCCCGGCTACCTATCTTCTGAACAATCAAAGTTCATCAAAAAAAAAAATCAAAACTTGAATAATCAAAGTGATCCCATTCTCTTTCTCTGTGTTCAAACATCATACTATAATCATATTCATTACTCCCAAATCTTCAACATAATCTTGTTTCTGGAACAACATTCATACTATAAGCATCAGGAAGATAAGAACAAGACTCTGATTTACAATTCTCTTATCCTTTGGTTATTCCAATCAATCAATCAATCAGGTGATTTTTTAATTTCATTTCATAATTTCATTTTGTTGGTTGGTTTAATAGCTTATTCGATTTAATTCGATTTGGTGATTGCAGAATCAATTGAATTGAAGATGGGAGGTTCGTTAGGGGTAGTTGCAGAATCACCAAAAAGAGGTTATTTCCCAGAAACCAAACTCGAAACTAAAATGGTGGAAGCTATGCAAAATAGGGCTTCCCCCATGAAATCCTTCAACACCATCATTCTTAAATTTCCTAAAATTGATCAGAGTTTTAGGAAATGCAAAGCAATCTTCGAACAATTTGGTAAAATCAATCAACCAACCCCTTTTTAATTCATCTGTTTTCAATCTATTATTCATTCTTGTTTTTTAATTGAATTGGTATCGAATCCTGATTATGGCAGATGTGGATAAGAATGAGGTGATTGATCACAGTGAGCTGAAACACTGCTTACGAAAACTGGAAGTTATCTTCAGTGAGGAAGAGATTGATGATTTCTTCAAATCATGTGATATAAATGAGAATATGGGGATTAAATTCAATGAGTTTATTGTTCTTCTTTGTCTTGTTTACCTTCTTCAGGAGGATCCTTCCAAGAAGACTCAACTTGTATCCTTTTTTAATTTAATTTTAATTTAATTTCTGTTCTTCAATTGAAATATTTGAATCATGATTTTGCTTTAACATTCAATTTTACCTTAGAAATCTCGGATGGGTTTGCCCAATTTGGAGGCCACATTTGAAACTCTTGTTGATGCTTTTGCTTTTTTGGACAAAAATAAAGATGGTTATGTCAGCAAGACTGAAATGGTTCAGGCCATTAATGAAACTACCACTGGGGAACGTTCTTCTGGACGAATCGCCATGAAAAGATTTGGTCAGCTTCCCAACCCCTCCTTTTGCTTTCTCTTTACTGTTCATCATTAAGCCTCTGTTTAGTTTGGCGCAAAACGTTTTCAGTGAAAAAGGGTTTTCCAAATTCAAAACTAGTTTTCTCTGTTTGGTTCGTTGCAAGAAAATTAATAGGAAAAGGAAAATGTGAGGAGACGAGAGAAGATTGATGGGAAGAAAGGAAGAGGGAGGTAAGAAAGAAAGAAAGTGGGAAAGTAGTTTTTCCACGTTTGGGAGAGTTATGAAAAGTTGTTTCTCATCCCTTGTCAAAACCAAACATGTAAAATGATTGAAAAGGGGAAAATGTAACCAAACGGAGCCTAAATCATATACGCTATCTATGTGCTATTACAGCATTTGGGAATTACATTTTAACTGAATTCATCAATTTTCTGCTGTAATCTTGATGGGTTCGATTTGAAGTGTGGTATAGTCTAAATTGATACTCCTTAAAAGCCAACTTGGGAACAAGGACTTGATGCTTGACTGGCTGGACTGAGGTTCTAAGTCTATACTTTGAATTTATTTGGTCGTGTCCAGGTATTATGTTCTGTCCTGGTGTCTGAGACTTACCTGCAGGTGCTTTTACATTTTCTACCTATAGAGAAAACTAAACATGGTGATGAGTTTGGTTGTATCCCGCATATCATGTCCTCGTGTCTGAGACTTATCCTCTGTTTGGTTTGGCGTAAAACATTTTCAATGAAAAATGATTTTTCACGGAAAACCTTTTTCAAAGAAAAACACAATTCCAAACTAGTTTCCTTTGTTTGGTTCCTTACAAGAAAATTAATAGAAAAAAGAAAAATGGGAGAAGATAGGTGAAGATAGGTGAAGATTAATGGAAGAAGGAAAATGGAGGTAAGGAGGTGAGGAAAGATGGAAAAGTGTTCCCTTCCTTTCAAATGGAAAATGTTTTTCCACCTTTGAGGGAGTCATGGAAAATTGATTTGCATCTCTTGTCAAACCAAACAACGTAAAGTGACTGAAAAGGGGAAAACTGTTTTCCATGAAAACGTTTTACACCCTACCAAACGGAACCTTGTTACTTTGCATTGTCTATCGGTCTATCCATAGAGAAGTGTAAGGACGACATTGAGTTTTACAAGGCACTCAGGAAAAATCATCTCTCCCACAACAAGTTTTAAGTTTAATGTTGATTAGTGTGAGAAATTAAACCAGAAGTGTTATGTTTTATGACATTGGTGTGTTCAGAATTGATATGATTGTGTTTAGAATTTGCAAATCAAAGAATCATCTTCTTCAGAGCTTGCCAAGCTCTGCATTTGTAGATTTTAATGTGTTGTTGTGCTACTGCAGAAGAGATGGACTGGGATAGAAATGGAATGGTTAACTTCAAAGAATTTCTATTTGCCTTCACCCGTTGGGTTGGTATCGATGAAGCTGAAGACGAGGATGAAGTAGATGAGGGTGAAGGTGAAGGAGAAGCTTAATCCTTTACTTTCTTGGAACTTCCTCTATAGTTTTCTATGATATGAAATACCTGTAAGTCTGTAACAGCAAATAGTTGAGCTGGTTAGGTGGATGGTGTTTACACCTTAGACTCTTAATTTTGACAAAATGTTGAGTTGTTATACAAAGGCATGGCTGCTGTTTTTTTCCCCACAGCCCATCACCACTTGTGTGCAGCAACCCAGTACAGCTTTAATAAGTGTAGCATGATACTTTTTGAAGGTCTTTAGTTTTGCATTTCATTGTCTGTACTTTAAGTTTGATACAGGTTTTGTAGTTTGTGACTATAGTGCTCTGCTTTGAACCATAGTATGAAACTCAAAAGTATGGAACTACTACCTCCAACTCTCCAAGGCTCCAATTCAAAAGACTGCATTTATATTCTAGTGTCCTAGTTCAAATTGTTGTGCCTTCCAGAATCTTCC GTTAAGGTTATGGTATATTCTAAATTTGAACCTTCAAATTCCAAAATCCAAAAGAAAAGAAAAAGACTGGACAATACGTGGTGGGTGCAGCACAAACCCCGGCTACCTATCTTCTGAACAATCAAAGTTCATCAAAAAAAAAAATCAAAACTTGAATAATCAAAGTGATCCCATTCTCTTTCTCTGTGTTCAAACATCATACTATAATCATATTCATTACTCCCAAATCTTCAACATAATCTTGTTTCTGGAACAACATTCATACTATAAGCATCAGGAAGATAAGAACAAGACTCTGATTTACAATTCTCTTATCCTTTGGTTATTCCAATCAATCAATCAATCAGAATCAATTGAATTGAAGATGGGAGGTTCGTTAGGGGTAGTTGCAGAATCACCAAAAAGAGGTTATTTCCCAGAAACCAAACTCGAAACTAAAATGGTGGAAGCTATGCAAAATAGGGCTTCCCCCATGAAATCCTTCAACACCATCATTCTTAAATTTCCTAAAATTGATCAGAGTTTTAGGAAATGCAAAGCAATCTTCGAACAATTTGATGTGGATAAGAATGAGGTGATTGATCACAGTGAGCTGAAACACTGCTTACGAAAACTGGAAGTTATCTTCAGTGAGGAAGAGATTGATGATTTCTTCAAATCATGTGATATAAATGAGAATATGGGGATTAAATTCAATGAGTTTATTGTTCTTCTTTGTCTTGTTTACCTTCTTCAGGAGGATCCTTCCAAGAAGACTCAACTTAAATCTCGGATGGGTTTGCCCAATTTGGAGGCCACATTTGAAACTCTTGTTGATGCTTTTGCTTTTTTGGACAAAAATAAAGATGAAGAGATGGACTGGGATAGAAATGGAATGGTTAACTTCAAAGAATTTCTATTTGCCTTCACCCGTTGGGTTGGTATCGATGAAGCTGAAGACGAGGATGAAGTAGATGAGGGTGAAGGTGAAGGAGAAGCTTAATCCTTTACTTTCTTGGAACTTCCTCTATAGTTTTCTATGATATGAAATACCTGTAAGTCTGTAACAGCAAATAGTTGAGCTGGTTAGGTGGATGGTGTTTACACCTTAGACTCTTAATTTTGACAAAATGTTGAGTTGTTATACAAAGGCATGGCTGCTGTTTTTTTCCCCACAGCCCATCACCACTTGTGTGCAGCAACCCAGTACAGCTTTAATAAGTGTAGCATGATACTTTTTGAAGGTCTTTAGTTTTGCATTTCATTGTCTGTACTTTAAGTTTGATACAGGTTTTGTAGTTTGTGACTATAGTGCTCTGCTTTGAACCATAGTATGAAACTCAAAAGTATGGAACTACTACCTCCAACTCTCCAAGGCTCCAATTCAAAAGACTGCATTTATATTCTAGTGTCCTAGTTCAAATTGTTGTGCCTTCCAGAATCTTCC ATGGGAGGTTCGTTAGGGGTAGTTGCAGAATCACCAAAAAGAGGTTATTTCCCAGAAACCAAACTCGAAACTAAAATGGTGGAAGCTATGCAAAATAGGGCTTCCCCCATGAAATCCTTCAACACCATCATTCTTAAATTTCCTAAAATTGATCAGAGTTTTAGGAAATGCAAAGCAATCTTCGAACAATTTGATGTGGATAAGAATGAGGTGATTGATCACAGTGAGCTGAAACACTGCTTACGAAAACTGGAAGTTATCTTCAGTGAGGAAGAGATTGATGATTTCTTCAAATCATGTGATATAAATGAGAATATGGGGATTAAATTCAATGAGTTTATTGTTCTTCTTTGTCTTGTTTACCTTCTTCAGGAGGATCCTTCCAAGAAGACTCAACTTAAATCTCGGATGGGTTTGCCCAATTTGGAGGCCACATTTGAAACTCTTGTTGATGCTTTTGCTTTTTTGGACAAAAATAAAGATGAAGAGATGGACTGGGATAGAAATGGAATGGTTAACTTCAAAGAATTTCTATTTGCCTTCACCCGTTGGGTTGGTATCGATGAAGCTGAAGACGAGGATGAAGTAGATGAGGGTGAAGGTGAAGGAGAAGCTTAA MGGSLGVVAESPKRGYFPETKLETKMVEAMQNRASPMKSFNTIILKFPKIDQSFRKCKAIFEQFDVDKNEVIDHSELKHCLRKLEVIFSEEEIDDFFKSCDINENMGIKFNEFIVLLCLVYLLQEDPSKKTQLKSRMGLPNLEATFETLVDAFAFLDKNKDEEMDWDRNGMVNFKEFLFAFTRWVGIDEAEDEDEVDEGEGEGEA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21748.1 vs. NCBI nr
Match: gi|902141404|gb|KNA04701.1| (hypothetical protein SOVF_197240 isoform A [Spinacia oleracea]) HSP 1 Score: 379.8 bits (974), Expect = 3.000e-102 Identity = 199/235 (84.68%), Postives = 200/235 (85.11%), Query Frame = 1
BLAST of Spo21748.1 vs. NCBI nr
Match: gi|731330442|ref|XP_010676135.1| (PREDICTED: probable calcium-binding protein CML21 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 305.8 bits (782), Expect = 5.600e-80 Identity = 166/228 (72.81%), Postives = 177/228 (77.63%), Query Frame = 1
BLAST of Spo21748.1 vs. NCBI nr
Match: gi|147819723|emb|CAN71481.1| (hypothetical protein VITISV_006244 [Vitis vinifera]) HSP 1 Score: 282.7 bits (722), Expect = 5.000e-73 Identity = 150/239 (62.76%), Postives = 174/239 (72.80%), Query Frame = 1
BLAST of Spo21748.1 vs. NCBI nr
Match: gi|225462035|ref|XP_002268527.1| (PREDICTED: probable calcium-binding protein CML21 isoform X2 [Vitis vinifera]) HSP 1 Score: 281.2 bits (718), Expect = 1.500e-72 Identity = 151/233 (64.81%), Postives = 171/233 (73.39%), Query Frame = 1
BLAST of Spo21748.1 vs. NCBI nr
Match: gi|731433404|ref|XP_010644632.1| (PREDICTED: probable calcium-binding protein CML21 isoform X1 [Vitis vinifera]) HSP 1 Score: 279.3 bits (713), Expect = 5.600e-72 Identity = 150/235 (63.83%), Postives = 171/235 (72.77%), Query Frame = 1
BLAST of Spo21748.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDV3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_197240 PE=4 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 2.100e-102 Identity = 199/235 (84.68%), Postives = 200/235 (85.11%), Query Frame = 1
BLAST of Spo21748.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CKR1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g091210 PE=4 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 3.900e-80 Identity = 166/228 (72.81%), Postives = 177/228 (77.63%), Query Frame = 1
BLAST of Spo21748.1 vs. UniProtKB/TrEMBL
Match: A5AMZ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006244 PE=4 SV=1) HSP 1 Score: 282.7 bits (722), Expect = 3.500e-73 Identity = 150/239 (62.76%), Postives = 174/239 (72.80%), Query Frame = 1
BLAST of Spo21748.1 vs. UniProtKB/TrEMBL
Match: D7UAN9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01200 PE=4 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 1.000e-72 Identity = 151/233 (64.81%), Postives = 171/233 (73.39%), Query Frame = 1
BLAST of Spo21748.1 vs. UniProtKB/TrEMBL
Match: A0A151S7V2_CAJCA (Putative calcium-binding protein CML21 OS=Cajanus cajan GN=KK1_027324 PE=4 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 2.100e-70 Identity = 143/230 (62.17%), Postives = 167/230 (72.61%), Query Frame = 1
BLAST of Spo21748.1 vs. ExPASy Swiss-Prot
Match: CML21_ARATH (Probable calcium-binding protein CML21 OS=Arabidopsis thaliana GN=CML21 PE=2 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 2.000e-66 Identity = 134/231 (58.01%), Postives = 163/231 (70.56%), Query Frame = 1
BLAST of Spo21748.1 vs. ExPASy Swiss-Prot
Match: CML22_ARATH (Probable calcium-binding protein CML22 OS=Arabidopsis thaliana GN=CML22 PE=3 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 6.400e-36 Identity = 85/220 (38.64%), Postives = 125/220 (56.82%), Query Frame = 1
BLAST of Spo21748.1 vs. TAIR (Arabidopsis)
Match: AT4G26470.1 (Calcium-binding EF-hand family protein) HSP 1 Score: 253.4 bits (646), Expect = 1.200e-67 Identity = 134/231 (58.01%), Postives = 163/231 (70.56%), Query Frame = 1
BLAST of Spo21748.1 vs. TAIR (Arabidopsis)
Match: AT3G24110.1 (Calcium-binding EF-hand family protein) HSP 1 Score: 152.1 bits (383), Expect = 3.600e-37 Identity = 85/220 (38.64%), Postives = 125/220 (56.82%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21748.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21748.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21748.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo21748.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|