Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCTACAATATATATCTTTACCGTCTATATATATCTCTCCCCAACAAACTCTTAAACCACCACCAACCACCAAACACACAATTAGTAATCTTCTCTAATTATAATATAATCAACCACCATTTTCATCTCCTTAAGCAAAAATGAATGTTTCCGAGGCGTTTAAATCGAGGAGTATTAAGAGTATGATTGGAGATCATCTTCTTCGGAATGGCTTGTTAAGATTAAGTTATGATCAAACTAGAAAAACATCCACCGTTAAACTATTGCCTGGACTTTCTCCAAGCAAAGTGGATGGATCTTTGATCATTTCAAAACAACGTAAAGTGGAATCAGTTTTTACCATGATGAACAAATTAGGTACGTATTATTTATAATAATGGTATAACACTATATGTACGAATATTAGTTTATAAATGGTTATGTTAGTATTGTAATTTGAATTAGCAATATAATTATATTTAAAAAGTACGCGATATATGGGATTAATTAAATTTTGGTTTATATAAATATTTTGCAGTAAAAGGAAAACTGAGTTTCGTTGGAGGGGTTGATAAAATATTCAAAGGAATATTTAGTGTACGTGAAGGAGAGAAGTTGTTGAGGGCTTCTCATTGTTGCTTGTACACCACGGCAGGTCCCATACCCGGCCGCCTCTTCATCTCCACCGAGAAACTCGCCTTCTGCAGCGACAAGCCTATCGCGAAAATCTCCTCCGCTACTGCCGGAGAACCTCTTAGGTTCCATTACAAGGTAAAATTAATAAACTTTAATTAATTTATTTGTCTCCTAATTAATAAGATTATTATAAACACGTACGTATACATGCATGTACTAATAATGTACATGCATAAAGTTATAGTATACGTACTTAATTAATATAATTATTATGTCAAAACAATTTATTTATTAGTTTGTAATTAACGTGAAATTTTCTTGTACGTGCAGATAGTGATCCCAATAAGGAAGATAGAAAGATCGAACCAAAACGAGAGCATGAAAAAACCATCACAGAAGTATCTAGAAATTGTGACAACAGACGAGTTTGAGTTTTGGTTTACGGGATTCCGATCGTACAATAAAACATTCAAATGCCTTCAACAAGTTTGCAGTCTACCAAAACTTAACTTGTTGACTTCAAGCTAGTTAATTAGTACTACGTATAATTCAAGTAGATCAATTGATCGAGTTCTTATGTAAATATAGTATGGCTAGTTATGTAAGTTCTTCTATATAGGATAATAGGACGGTAAGAGAAATAGTAGTTTTCGATCCCTTATAGGTTAAGGTAGAAGATGAGATTGTATTATAGTTTATCCTTTATTATAGTATTGTATTCTTTGTAGTAATTGAATTGATATAGAATTCTTGCTATTTAAGATTTGTAAAAAGTATTCGAAATAAAACTATCTATATATATTGAG CTCTACAATATATATCTTTACCGTCTATATATATCTCTCCCCAACAAACTCTTAAACCACCACCAACCACCAAACACACAATTAGTAATCTTCTCTAATTATAATATAATCAACCACCATTTTCATCTCCTTAAGCAAAAATGAATGTTTCCGAGGCGTTTAAATCGAGGAGTATTAAGAGTATGATTGGAGATCATCTTCTTCGGAATGGCTTGTTAAGATTAAGTTATGATCAAACTAGAAAAACATCCACCGTTAAACTATTGCCTGGACTTTCTCCAAGCAAAGTGGATGGATCTTTGATCATTTCAAAACAACGTAAAGTGGAATCAGTTTTTACCATGATGAACAAATTAGTAAAAGGAAAACTGAGTTTCGTTGGAGGGGTTGATAAAATATTCAAAGGAATATTTAGTGTACGTGAAGGAGAGAAGTTGTTGAGGGCTTCTCATTGTTGCTTGTACACCACGGCAGGTCCCATACCCGGCCGCCTCTTCATCTCCACCGAGAAACTCGCCTTCTGCAGCGACAAGCCTATCGCGAAAATCTCCTCCGCTACTGCCGGAGAACCTCTTAGGTTCCATTACAAGATAGTGATCCCAATAAGGAAGATAGAAAGATCGAACCAAAACGAGAGCATGAAAAAACCATCACAGAAGTATCTAGAAATTGTGACAACAGACGAGTTTGAGTTTTGGTTTACGGGATTCCGATCGTACAATAAAACATTCAAATGCCTTCAACAAGTTTGCAGTCTACCAAAACTTAACTTGTTGACTTCAAGCTAGTTAATTAGTACTACGTATAATTCAAGTAGATCAATTGATCGAGTTCTTATGTAAATATAGTATGGCTAGTTATGTAAGTTCTTCTATATAGGATAATAGGACGGTAAGAGAAATAGTAGTTTTCGATCCCTTATAGGTTAAGGTAGAAGATGAGATTGTATTATAGTTTATCCTTTATTATAGTATTGTATTCTTTGTAGTAATTGAATTGATATAGAATTCTTGCTATTTAAGATTTGTAAAAAGTATTCGAAATAAAACTATCTATATATATTGAG ATGAATGTTTCCGAGGCGTTTAAATCGAGGAGTATTAAGAGTATGATTGGAGATCATCTTCTTCGGAATGGCTTGTTAAGATTAAGTTATGATCAAACTAGAAAAACATCCACCGTTAAACTATTGCCTGGACTTTCTCCAAGCAAAGTGGATGGATCTTTGATCATTTCAAAACAACGTAAAGTGGAATCAGTTTTTACCATGATGAACAAATTAGTAAAAGGAAAACTGAGTTTCGTTGGAGGGGTTGATAAAATATTCAAAGGAATATTTAGTGTACGTGAAGGAGAGAAGTTGTTGAGGGCTTCTCATTGTTGCTTGTACACCACGGCAGGTCCCATACCCGGCCGCCTCTTCATCTCCACCGAGAAACTCGCCTTCTGCAGCGACAAGCCTATCGCGAAAATCTCCTCCGCTACTGCCGGAGAACCTCTTAGGTTCCATTACAAGATAGTGATCCCAATAAGGAAGATAGAAAGATCGAACCAAAACGAGAGCATGAAAAAACCATCACAGAAGTATCTAGAAATTGTGACAACAGACGAGTTTGAGTTTTGGTTTACGGGATTCCGATCGTACAATAAAACATTCAAATGCCTTCAACAAGTTTGCAGTCTACCAAAACTTAACTTGTTGACTTCAAGCTAG MNVSEAFKSRSIKSMIGDHLLRNGLLRLSYDQTRKTSTVKLLPGLSPSKVDGSLIISKQRKVESVFTMMNKLVKGKLSFVGGVDKIFKGIFSVREGEKLLRASHCCLYTTAGPIPGRLFISTEKLAFCSDKPIAKISSATAGEPLRFHYKIVIPIRKIERSNQNESMKKPSQKYLEIVTTDEFEFWFTGFRSYNKTFKCLQQVCSLPKLNLLTSS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21704.1 vs. NCBI nr
Match: gi|902203604|gb|KNA14611.1| (hypothetical protein SOVF_105770 [Spinacia oleracea]) HSP 1 Score: 419.5 bits (1077), Expect = 3.600e-114 Identity = 214/219 (97.72%), Postives = 214/219 (97.72%), Query Frame = 1
BLAST of Spo21704.1 vs. NCBI nr
Match: gi|731354530|ref|XP_010688646.1| (PREDICTED: GEM-like protein 4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 342.8 bits (878), Expect = 4.300e-91 Identity = 170/215 (79.07%), Postives = 193/215 (89.77%), Query Frame = 1
BLAST of Spo21704.1 vs. NCBI nr
Match: gi|902203601|gb|KNA14608.1| (hypothetical protein SOVF_105740 [Spinacia oleracea]) HSP 1 Score: 322.8 bits (826), Expect = 4.600e-85 Identity = 168/210 (80.00%), Postives = 184/210 (87.62%), Query Frame = 1
BLAST of Spo21704.1 vs. NCBI nr
Match: gi|731311806|ref|XP_010671174.1| (PREDICTED: putative GEM-like protein 8 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 308.5 bits (789), Expect = 9.000e-81 Identity = 160/206 (77.67%), Postives = 180/206 (87.38%), Query Frame = 1
BLAST of Spo21704.1 vs. NCBI nr
Match: gi|902203603|gb|KNA14610.1| (hypothetical protein SOVF_105760 [Spinacia oleracea]) HSP 1 Score: 300.1 bits (767), Expect = 3.200e-78 Identity = 153/207 (73.91%), Postives = 177/207 (85.51%), Query Frame = 1
BLAST of Spo21704.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R544_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105770 PE=4 SV=1) HSP 1 Score: 419.5 bits (1077), Expect = 2.500e-114 Identity = 214/219 (97.72%), Postives = 214/219 (97.72%), Query Frame = 1
BLAST of Spo21704.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRP7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202600 PE=4 SV=1) HSP 1 Score: 342.8 bits (878), Expect = 3.000e-91 Identity = 170/215 (79.07%), Postives = 193/215 (89.77%), Query Frame = 1
BLAST of Spo21704.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R537_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105740 PE=4 SV=1) HSP 1 Score: 322.8 bits (826), Expect = 3.200e-85 Identity = 168/210 (80.00%), Postives = 184/210 (87.62%), Query Frame = 1
BLAST of Spo21704.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D414_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g005260 PE=4 SV=1) HSP 1 Score: 308.5 bits (789), Expect = 6.300e-81 Identity = 160/206 (77.67%), Postives = 180/206 (87.38%), Query Frame = 1
BLAST of Spo21704.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R538_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105760 PE=4 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 2.200e-78 Identity = 153/207 (73.91%), Postives = 177/207 (85.51%), Query Frame = 1
BLAST of Spo21704.1 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 5.200e-36 Identity = 83/168 (49.40%), Postives = 109/168 (64.88%), Query Frame = 1
BLAST of Spo21704.1 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 3.100e-33 Identity = 75/144 (52.08%), Postives = 99/144 (68.75%), Query Frame = 1
BLAST of Spo21704.1 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2) HSP 1 Score: 139.0 bits (349), Expect = 5.900e-32 Identity = 73/137 (53.28%), Postives = 97/137 (70.80%), Query Frame = 1
BLAST of Spo21704.1 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 2.500e-30 Identity = 68/137 (49.64%), Postives = 96/137 (70.07%), Query Frame = 1
BLAST of Spo21704.1 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 2.100e-21 Identity = 53/135 (39.26%), Postives = 84/135 (62.22%), Query Frame = 1
BLAST of Spo21704.1 vs. TAIR (Arabidopsis)
Match: AT5G08350.1 (GRAM domain-containing protein / ABA-responsive protein-related) HSP 1 Score: 152.5 bits (384), Expect = 2.900e-37 Identity = 83/168 (49.40%), Postives = 109/168 (64.88%), Query Frame = 1
BLAST of Spo21704.1 vs. TAIR (Arabidopsis)
Match: AT5G23370.1 (GRAM domain-containing protein / ABA-responsive protein-related) HSP 1 Score: 143.3 bits (360), Expect = 1.800e-34 Identity = 75/144 (52.08%), Postives = 99/144 (68.75%), Query Frame = 1
BLAST of Spo21704.1 vs. TAIR (Arabidopsis)
Match: AT5G23350.1 (GRAM domain-containing protein / ABA-responsive protein-related) HSP 1 Score: 139.0 bits (349), Expect = 3.300e-33 Identity = 73/137 (53.28%), Postives = 97/137 (70.80%), Query Frame = 1
BLAST of Spo21704.1 vs. TAIR (Arabidopsis)
Match: AT5G23360.1 (GRAM domain-containing protein / ABA-responsive protein-related) HSP 1 Score: 133.7 bits (335), Expect = 1.400e-31 Identity = 68/137 (49.64%), Postives = 96/137 (70.07%), Query Frame = 1
BLAST of Spo21704.1 vs. TAIR (Arabidopsis)
Match: AT4G01600.1 (GRAM domain family protein) HSP 1 Score: 104.0 bits (258), Expect = 1.200e-22 Identity = 53/135 (39.26%), Postives = 84/135 (62.22%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21704.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21704.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21704.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21704.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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