Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTGTGACACACTTGTGTATATCCCAAGAAAACAAAATTACAAATCACGAAATTTCCACTTGTTTGAAAAATACAACAATCTAAGCCACGAAATTTCCCACCTACTCTTTATCTTTTATGTTACAATTCTTACTAGGTACAAGAACAAGTACTACCAAGTGTTAGTGTTAGTGTTAGTGTTAGTGTTAGTGTTGTCTAGTAGTATAAATAGGAGAGCAACAAAATCAAAAAAATATCATCATTCGATAAATTCAGCTACAAAACACTGCAAAACTTATACCAAGCCACTGCATTTTTCAAGTGATCTTATTTCCTACAAATGGGTTCAATTGATGCTAGCAATGTGGCTGAAGGGAACACTACAATGCACCGCCTTATCGCGGAGGAAGGCGCGGTGTTGATGCCCGGTATCCAAGACGCCTTCTCCGCCGCCATTTGTGCCAAAACTGGCTTCAAAGCTTGCTTTGTGTCTGGCTTTGGTGTTTCCGCTGCCCTCCTTGGCATGCCTGATTTTGGCTTGCTCACGTATACTTCTTTCTCTTAATTAATTACTATGTTGCTTATGTATTGTCTTGTTTTAATGCTTTGTTGAACATGCTTAATTAATTTAGGATAGTTAACTAAGATTTTTGCATGTAAAGAGTAAATTAAATTTTGAAATCTTCAATGTGTACCACTTTCTCCTATCTGTTGTTATTAATGTGATTTTAAATATGACTGTTAAAGTAGGACGACATAACTATAGGGCAAGCCAATTAAGAGTGTGTTTTGTCATGAAAGATTAAAAATAGGTTGTTTGGCCTAATGGTTAATTGTTGTTAAGTACTCTAATGTTTAGAGGTTAAGTTAGCTATCTAGGGCTTGCAAATTTTACATTTATGTATTCTAATGTTTAGAGGTTAACTTAGCTATCCAGGGAAAATCATTTTACAATAAAAATGTTTTACGCCCTATCAAACAGAGTCTTAGTACATACCCCTTTCATATGCATGCAATTTTACATTTAGGGTTTGAGGACGATACAAAATTGAACAAAGTCGTCATAATTTAAAGTTGACATAGATATAAAATCATACTCTATGATGCAATTTCTCTGTATCATTAAGGGTTTATTTGTAGAAATCATGTATCCTTTTAATTATAAAGGGTTGAGTTAACTTGACAATGTTCAAAACGTTATTCGTATATTCACCATTTCAAGTTGTAGACTTGTAGTCCTTGGTTTTGAAACTGTTTATGACCAACATTGAACAAATGTCCTCGTAATTCCAAAAACACCCCCGTGATGAACAAAGTTAGGTCATGTGAGTCATGTGACTATTGTAAATTTACCTAACATTGTAGAAATGGACCTAATTCAAGTAATAATTAAGTGTATATGTTGAATTTTAAATATTCAGAGACTTCTCTCTATATCAATAGATAAGGTGATATAGAATTTATCTAGTATAGGGAATACAAAGTTATGGCCTTATAAATTTATAACGGTTAAAACTAAAGGTCTAGAGTCAGCAGTGTTATAACAGTTAAAACTAAAGGTTTAGAGTCAGCAGTGTTATAACGGTTAAAACTAAAGGTCTAGAGTCAGCAGTATTATAACGGTTAAAATTAAAGTTCAGCAGAACATATAACACGGTTGTATTCTTATTTGATTTCGTGTCAACTTGAAATTGTTCAAAAATATATCAAAATGTAAGTAATAAGTTGGATAGTAGCACAATACGACAAATCTATATAACTTGATCGGGTTCACTCGAGTTTGTGTTTGTATCATGTCATGTCAAGTTCGAATTTCTCTCATTAGCTTCTAGTCGTTTTCGTTGAGACTTTTTCTTTAATCATACTTTGGTGTAATTTGGTTTGAAAAGTATGTAAAAGACTAAAAATTTACTCCACCTAACAAACAAACAAACAAAATTTTCTTCTCTTTTTTTAGAAATGGGCCAAATGGGCCTAAGTCAGTATACACGTTTATGTCAAACTTTATATCAAAAAAAAGTCATTAGTGTATGCACCACCTTACCTTTTATAGAGTTAGTGATGTACTGTCTATGACCCATTTAGAAATCATTAGGGACCCAAGTTAATTATCTTGAGTCAAACTGAACTAAGAAATTACCATATGGTAATTTTGGAAGATAAGAATCCAAGGTATATGACCATGTGAAACTACTCTATTGTTGTCTGGTATGTTACTCAGACTCGAGTACTAGCATCAGACACAGACACATGTACGTGTCTAAGTGTGTAACAATGCTAAATAATGAAAATAGACCAAAATGAAATAATGGAGTACACATAGCCATATCAGAGTGTCGAAAATCCAACACGGATACTTGAGGTAAAACAAAGAGTCTCGAGTAACATATGTTGTCGGAATGTGAAAACTCTAGCAGTTAATATACGGAGTATTTAATCAAATCATACATAGGTTCGTGTTGACGTGTATTTGGTTCGTACAACGTATGTACGAGTAATAATTATAAAATTAATTTGATGACATATTTTTTGATACGTACAGGACCACGGAAGTTACACAAGTTACTCGTAGAATAACAGCTGCTGCCCCAAACTTGTGTGTCATTGTTGATGGAGGTAACAATCAAACTAGTGTTTATCTTTCTTTATATTACATGATCAAATGACTTATTTCAAGGTAGAACTTACATAAGGTTTTTCTTTTGGGTATGCAAAGACACCGGTGGCGGCGGTCCTTTGAATGTACAAAGGTTCGTTAAAGAGTTGATCGGAGCTGGTGCTAAAGGTGTCTTTCTTGAGGTAAATGGTTCTCTACCAGACTATCAGTCTAGAATATGTCTTGAATCAGTCAAATCCCCTTTCTACAAACCCCAGCACGCTCATCAACATCAATAAAACTTAATTCTCCTCTGCACGTGGACGTAGCTAACGCATTGTTAGTGAACCACGTTAAATATATGCGTTCTTTATTTGCGTTCTTAATTATCTTTCTTGCTTTTGTTATAACAGTATTCTTGTGGTGTACTATGTAGTAGCATAGGACAATTAAGTTTATGTATACTCTAATGGTATATGTGTATTTCTATTAGAATCTTAATTATGCCTAATTAGATTCAGAGTTGTTAAACTAACTACAATGTTTCTTTGGACAGGATCAAGTATGGCCGAAGAAGTGTGGTAAATATAAACATTTTTTGCTAATTTTTTTCATTTTTCATTAGTAATATTAAGTATCAAGGATGACATGATTTTTCATTTTTTTTTCCCCTTCTGTTGTATTATTTTCTCAGGTCATATGCGAGGCAAGACGGTTGTCCCTGCAGAGGAGCATGCACTTAAAATAGCCGCGGCAAGAGACGCCATTGGAGATGCTGATTTCTTCCTGGTAGCAAGGACTGATGCACGAGCACCTCATGGTCTTCAAGAAGCTATTAGGCGCGCTAACCTTTATAGAGAGGTATCTTAACTTCTCCATCTGATCAATGCTAACATAGACTAAGACCGTCTGTCAAATTACCAACTCAATCAAAAGCTTAACCTGATGGTTGAAGCCCTAATATTAGTTTTATACTCTATCACCGTCAATATTGTAACACATATGAATATTCATCAATAGTACGCACTCTAATTAAGGAGTTTCAGTGAATCTAACACTACCTTGTATGATTTAATTACCTACAGGCGGGAGCTGATGCTACCTTTGTCGAGGCACCAGCTAACATCGAGGAGCTGAAAGAGGTTGTTAGGGATGTAAAAGGGTTGAGGATTGCTAACATGATAGAAGGTGGGAAAACTCCCTTACACACACCAACAGAGTTCAAGGAAATGGGATTCCACTTGATTGCGCATTCACTCTCAACACTTTATGCTACGACCAAAGCTTTGGTTGATATCATGAAGGTTCTCAAGGATAAGGGAACTACTAGGGATGACATGGACAAGATTGTTACTTTCTCCGAGTTTAATGACATGATCAGCTTGGAGTCCTGGTATGAGACCGAATCAAAGTTCAAGAACTTCATCCCTAAAGCTTGATTACTAGCCAGCCTATATATACATGGGATTTAAATATATGAGGTTGGAGTCACATATCATATAATTAATTTGTTATCACTTGTTTAAAAATATTGTTTAAAATTATGCATTTGAGTATTATTGTTGCTTGTTTGATTTCTGTTAAGTTGTACTCCTGCAGCAATTGAGTTGAGAGTGTAATTTTCTTCCTACTATGAAAATAAATGAAGTACTATTCTTATGATTGTTATTAGA ATTTTGTGACACACTTGTGTATATCCCAAGAAAACAAAATTACAAATCACGAAATTTCCACTTGTTTGAAAAATACAACAATCTAAGCCACGAAATTTCCCACCTACTCTTTATCTTTTATGTTACAATTCTTACTAGGTACAAGAACAAGTACTACCAAGTGTTAGTGTTAGTGTTAGTGTTAGTGTTAGTGTTGTCTAGTAGTATAAATAGGAGAGCAACAAAATCAAAAAAATATCATCATTCGATAAATTCAGCTACAAAACACTGCAAAACTTATACCAAGCCACTGCATTTTTCAAGTGATCTTATTTCCTACAAATGGGTTCAATTGATGCTAGCAATGTGGCTGAAGGGAACACTACAATGCACCGCCTTATCGCGGAGGAAGGCGCGGTGTTGATGCCCGGTATCCAAGACGCCTTCTCCGCCGCCATTTGTGCCAAAACTGGCTTCAAAGCTTGCTTTGTGTCTGGCTTTGGTGTTTCCGCTGCCCTCCTTGGCATGCCTGATTTTGGCTTGCTCACGACCACGGAAGTTACACAAGTTACTCGTAGAATAACAGCTGCTGCCCCAAACTTGTGTGTCATTGTTGATGGAGACACCGGTGGCGGCGGTCCTTTGAATGTACAAAGGTTCGTTAAAGAGTTGATCGGAGCTGGTGCTAAAGGTGTCTTTCTTGAGGATCAAGTATGGCCGAAGAAGTGTGGTCATATGCGAGGCAAGACGGTTGTCCCTGCAGAGGAGCATGCACTTAAAATAGCCGCGGCAAGAGACGCCATTGGAGATGCTGATTTCTTCCTGGTAGCAAGGACTGATGCACGAGCACCTCATGGTCTTCAAGAAGCTATTAGGCGCGCTAACCTTTATAGAGAGGCGGGAGCTGATGCTACCTTTGTCGAGGCACCAGCTAACATCGAGGAGCTGAAAGAGGTTGTTAGGGATGTAAAAGGGTTGAGGATTGCTAACATGATAGAAGGTGGGAAAACTCCCTTACACACACCAACAGAGTTCAAGGAAATGGGATTCCACTTGATTGCGCATTCACTCTCAACACTTTATGCTACGACCAAAGCTTTGGTTGATATCATGAAGGTTCTCAAGGATAAGGGAACTACTAGGGATGACATGGACAAGATTGTTACTTTCTCCGAGTTTAATGACATGATCAGCTTGGAGTCCTGGTATGAGACCGAATCAAAGTTCAAGAACTTCATCCCTAAAGCTTGATTACTAGCCAGCCTATATATACATGGGATTTAAATATATGAGGTTGGAGTCACATATCATATAATTAATTTGTTATCACTTGTTTAAAAATATTGTTTAAAATTATGCATTTGAGTATTATTGTTGCTTGTTTGATTTCTGTTAAGTTGTACTCCTGCAGCAATTGAGTTGAGAGTGTAATTTTCTTCCTACTATGAAAATAAATGAAGTACTATTCTTATGATTGTTATTAGA ATGGGTTCAATTGATGCTAGCAATGTGGCTGAAGGGAACACTACAATGCACCGCCTTATCGCGGAGGAAGGCGCGGTGTTGATGCCCGGTATCCAAGACGCCTTCTCCGCCGCCATTTGTGCCAAAACTGGCTTCAAAGCTTGCTTTGTGTCTGGCTTTGGTGTTTCCGCTGCCCTCCTTGGCATGCCTGATTTTGGCTTGCTCACGACCACGGAAGTTACACAAGTTACTCGTAGAATAACAGCTGCTGCCCCAAACTTGTGTGTCATTGTTGATGGAGACACCGGTGGCGGCGGTCCTTTGAATGTACAAAGGTTCGTTAAAGAGTTGATCGGAGCTGGTGCTAAAGGTGTCTTTCTTGAGGATCAAGTATGGCCGAAGAAGTGTGGTCATATGCGAGGCAAGACGGTTGTCCCTGCAGAGGAGCATGCACTTAAAATAGCCGCGGCAAGAGACGCCATTGGAGATGCTGATTTCTTCCTGGTAGCAAGGACTGATGCACGAGCACCTCATGGTCTTCAAGAAGCTATTAGGCGCGCTAACCTTTATAGAGAGGCGGGAGCTGATGCTACCTTTGTCGAGGCACCAGCTAACATCGAGGAGCTGAAAGAGGTTGTTAGGGATGTAAAAGGGTTGAGGATTGCTAACATGATAGAAGGTGGGAAAACTCCCTTACACACACCAACAGAGTTCAAGGAAATGGGATTCCACTTGATTGCGCATTCACTCTCAACACTTTATGCTACGACCAAAGCTTTGGTTGATATCATGAAGGTTCTCAAGGATAAGGGAACTACTAGGGATGACATGGACAAGATTGTTACTTTCTCCGAGTTTAATGACATGATCAGCTTGGAGTCCTGGTATGAGACCGAATCAAAGTTCAAGAACTTCATCCCTAAAGCTTGA MGSIDASNVAEGNTTMHRLIAEEGAVLMPGIQDAFSAAICAKTGFKACFVSGFGVSAALLGMPDFGLLTTTEVTQVTRRITAAAPNLCVIVDGDTGGGGPLNVQRFVKELIGAGAKGVFLEDQVWPKKCGHMRGKTVVPAEEHALKIAAARDAIGDADFFLVARTDARAPHGLQEAIRRANLYREAGADATFVEAPANIEELKEVVRDVKGLRIANMIEGGKTPLHTPTEFKEMGFHLIAHSLSTLYATTKALVDIMKVLKDKGTTRDDMDKIVTFSEFNDMISLESWYETESKFKNFIPKA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21624.1 vs. NCBI nr
Match: gi|902154132|gb|KNA05787.1| (hypothetical protein SOVF_187210 [Spinacia oleracea]) HSP 1 Score: 595.9 bits (1535), Expect = 4.000e-167 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 1
BLAST of Spo21624.1 vs. NCBI nr
Match: gi|902167268|gb|KNA07348.1| (hypothetical protein SOVF_172700 [Spinacia oleracea]) HSP 1 Score: 549.3 bits (1414), Expect = 4.200e-153 Identity = 274/302 (90.73%), Postives = 292/302 (96.69%), Query Frame = 1
BLAST of Spo21624.1 vs. NCBI nr
Match: gi|902218929|gb|KNA18180.1| (hypothetical protein SOVF_073200 [Spinacia oleracea]) HSP 1 Score: 541.2 bits (1393), Expect = 1.200e-150 Identity = 269/302 (89.07%), Postives = 283/302 (93.71%), Query Frame = 1
BLAST of Spo21624.1 vs. NCBI nr
Match: gi|731362409|ref|XP_010692873.1| (PREDICTED: petal death protein-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 538.1 bits (1385), Expect = 9.800e-150 Identity = 265/302 (87.75%), Postives = 286/302 (94.70%), Query Frame = 1
BLAST of Spo21624.1 vs. NCBI nr
Match: gi|902167267|gb|KNA07347.1| (hypothetical protein SOVF_172690 [Spinacia oleracea]) HSP 1 Score: 537.3 bits (1383), Expect = 1.700e-149 Identity = 269/302 (89.07%), Postives = 286/302 (94.70%), Query Frame = 1
BLAST of Spo21624.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEU2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_187210 PE=4 SV=1) HSP 1 Score: 595.9 bits (1535), Expect = 2.800e-167 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 1
BLAST of Spo21624.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKY2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172700 PE=4 SV=1) HSP 1 Score: 549.3 bits (1414), Expect = 3.000e-153 Identity = 274/302 (90.73%), Postives = 292/302 (96.69%), Query Frame = 1
BLAST of Spo21624.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFD0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073200 PE=4 SV=1) HSP 1 Score: 541.2 bits (1393), Expect = 8.100e-151 Identity = 269/302 (89.07%), Postives = 283/302 (93.71%), Query Frame = 1
BLAST of Spo21624.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BDW4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g023220 PE=4 SV=1) HSP 1 Score: 538.1 bits (1385), Expect = 6.800e-150 Identity = 265/302 (87.75%), Postives = 286/302 (94.70%), Query Frame = 1
BLAST of Spo21624.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJB6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172690 PE=4 SV=1) HSP 1 Score: 537.3 bits (1383), Expect = 1.200e-149 Identity = 269/302 (89.07%), Postives = 286/302 (94.70%), Query Frame = 1
BLAST of Spo21624.1 vs. ExPASy Swiss-Prot
Match: PDP_DIACA (Petal death protein OS=Dianthus caryophyllus GN=PDP PE=1 SV=1) HSP 1 Score: 493.0 bits (1268), Expect = 2.300e-138 Identity = 239/289 (82.70%), Postives = 266/289 (92.04%), Query Frame = 1
BLAST of Spo21624.1 vs. ExPASy Swiss-Prot
Match: CPPM_ARATH (Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic OS=Arabidopsis thaliana GN=At1g77060 PE=2 SV=2) HSP 1 Score: 374.0 bits (959), Expect = 1.500e-102 Identity = 182/287 (63.41%), Postives = 222/287 (77.35%), Query Frame = 1
BLAST of Spo21624.1 vs. ExPASy Swiss-Prot
Match: DML_EUBBA (2,3-dimethylmalate lyase OS=Eubacterium barkeri GN=Dml PE=1 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 2.100e-59 Identity = 123/280 (43.93%), Postives = 172/280 (61.43%), Query Frame = 1
BLAST of Spo21624.1 vs. ExPASy Swiss-Prot
Match: PRPB_AERPE (2-methylisocitrate lyase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=prpB PE=3 SV=2) HSP 1 Score: 201.8 bits (512), Expect = 1.000e-50 Identity = 113/279 (40.50%), Postives = 171/279 (61.29%), Query Frame = 1
BLAST of Spo21624.1 vs. ExPASy Swiss-Prot
Match: PRPB_BACHD (2-methylisocitrate lyase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=prpB PE=3 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 7.700e-46 Identity = 111/271 (40.96%), Postives = 158/271 (58.30%), Query Frame = 1
BLAST of Spo21624.1 vs. TAIR (Arabidopsis)
Match: AT1G21440.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 382.1 bits (980), Expect = 3.200e-106 Identity = 184/285 (64.56%), Postives = 229/285 (80.35%), Query Frame = 1
BLAST of Spo21624.1 vs. TAIR (Arabidopsis)
Match: AT1G77060.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 374.0 bits (959), Expect = 8.600e-104 Identity = 182/287 (63.41%), Postives = 222/287 (77.35%), Query Frame = 1
BLAST of Spo21624.1 vs. TAIR (Arabidopsis)
Match: AT2G43180.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 137.1 bits (344), Expect = 1.800e-32 Identity = 91/285 (31.93%), Postives = 158/285 (55.44%), Query Frame = 1
BLAST of Spo21624.1 vs. TAIR (Arabidopsis)
Match: AT3G21720.1 (isocitrate lyase) HSP 1 Score: 65.9 bits (159), Expect = 5.000e-11 Identity = 42/93 (45.16%), Postives = 52/93 (55.91%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21624.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21624.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21624.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21624.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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