Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTGAACAACTTGTTGAGGATTCTAACAGTAAGTATTTAGTTATAGCTTACTGGGTTGGATTGGGCATACATGAGGGCCATTCTATTTTTCAAAAAGCCCAAAGCGGCATTCAATATACTGCGAGAAACATGTACCAAGTTGACTGAATCGTGCTAAAAATTGCAAGAGTAGGATAATCTCAAAAGAAGTATGTGGATCTTTTTGATATGTTCTTCCCAGAAGCAAAACCGGATTTGCATCAAGCGTGTGAGCTCTACTACAAGCTCCTTAAAAGAATATTATCTTTGAGAAACCAAGAGCCCGAAGAGATTCAGTTTCAGTGGGCGTTGTGTTGTGAAGCTTCTAAAGAATTACATATTGCTGAACTTGTGATGAAGTCGGTATCCAAAGACAAGGATGCCCATGTTTCCTGTGCTCCTGCGAAGGAACAATCTCTGGTGCATGTAGTAGAAGAGGCTGATGATGATGGAAGTTAATTTGGAAGAGTTTTCTGATGATCAAACACTTGGGCTGCACTGGATATATAGTCACAATAAGGAAGCACAATGGCCTTACAGGGGGCTATGCTTGTCAATTTGTCTTACAGGAAGGTTCTTGGGACACGTGTACAGGAGAGACAGCGTGCTCAGTCTGTTGACCACTGCATGCTTATTTCAGTGTATTCCTTGTGGAAGTCATTTAGGTAATTTAAAGGAGCTATGGCCGCATACTCGCATGTTATTTCAGCTCACACAGAAGGTTTGTTTTCGACAGTAAAAGAGAGGGAACAATGGTCACCAATAAGTGGATTCCCAGTGGCAACCTATTCCCTTGAAACCTGCCTCTGCTGATAATTCCGAGAGTCAGACCAGCATTTGGAAGTATATTCGTTGATTCTGTGACCATCGTCAAGCAGGTCATATGGGGCCAGGTTTGGCAAGCTCTCATTCACATAAAGCAAGGTCTCCGCTTTTATGCTTATATAGACTAA ATGCCTGAACAACTTGTTGAGGATTCTAACAAAGCAAAACCGGATTTGCATCAAGCGTGTGAGCTCTACTACAAGCTCCTTAAAAGAATATTATCTTTGAGAAACCAAGAGCCCGAAGAGATTCAGTTTCAGTGGGCGTTGTGTTGTGAAGCTTCTAAAGAATTACATATTGCTGAACTTGTGATGAAGTCGAAGAGGCTGATGATGATGGAAGTTAATTTGGAAGAGTTTTCTGATGATCAAACACTTGGGCTGCACTGGATATATAGTCACAATAAGGAAGCACAATGGCCTTACAGGGGGCTATGCTTGTCAATTTGTCTTACAGGAAGGTTCTTGGGACACGTGTACAGGAGAGACAGCGTGCTCAGTCTGTTGACCACTGCATGCTTATTTCAGTGTATTCCTTGTGGAAGTCATTTAGGTAATTTAAAGGAGCTATGGCCGCATACTCGCATGTTATTTCAGCTCACACAGAAGGTTTGTTTTCGACAACCAGCATTTGGAAGTATATTCGTTGATTCTGTGACCATCGTCAAGCAGGTCATATGGGGCCAGGTTTGGCAAGCTCTCATTCACATAAAGCAAGGTCTCCGCTTTTATGCTTATATAGACTAA ATGCCTGAACAACTTGTTGAGGATTCTAACAAAGCAAAACCGGATTTGCATCAAGCGTGTGAGCTCTACTACAAGCTCCTTAAAAGAATATTATCTTTGAGAAACCAAGAGCCCGAAGAGATTCAGTTTCAGTGGGCGTTGTGTTGTGAAGCTTCTAAAGAATTACATATTGCTGAACTTGTGATGAAGTCGAAGAGGCTGATGATGATGGAAGTTAATTTGGAAGAGTTTTCTGATGATCAAACACTTGGGCTGCACTGGATATATAGTCACAATAAGGAAGCACAATGGCCTTACAGGGGGCTATGCTTGTCAATTTGTCTTACAGGAAGGTTCTTGGGACACGTGTACAGGAGAGACAGCGTGCTCAGTCTGTTGACCACTGCATGCTTATTTCAGTGTATTCCTTGTGGAAGTCATTTAGGTAATTTAAAGGAGCTATGGCCGCATACTCGCATGTTATTTCAGCTCACACAGAAGGTTTGTTTTCGACAACCAGCATTTGGAAGTATATTCGTTGATTCTGTGACCATCGTCAAGCAGGTCATATGGGGCCAGGTTTGGCAAGCTCTCATTCACATAAAGCAAGGTCTCCGCTTTTATGCTTATATAGACTAA MPEQLVEDSNKAKPDLHQACELYYKLLKRILSLRNQEPEEIQFQWALCCEASKELHIAELVMKSKRLMMMEVNLEEFSDDQTLGLHWIYSHNKEAQWPYRGLCLSICLTGRFLGHVYRRDSVLSLLTTACLFQCIPCGSHLGNLKELWPHTRMLFQLTQKVCFRQPAFGSIFVDSVTIVKQVIWGQVWQALIHIKQGLRFYAYID Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21515.1 vs. NCBI nr
Match: gi|902229794|gb|KNA21600.1| (hypothetical protein SOVF_041630 [Spinacia oleracea]) HSP 1 Score: 132.9 bits (333), Expect = 6.400e-28 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of Spo21515.1 vs. NCBI nr
Match: gi|297735229|emb|CBI17591.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 129.4 bits (324), Expect = 7.100e-27 Identity = 75/161 (46.58%), Postives = 93/161 (57.76%), Query Frame = 1
BLAST of Spo21515.1 vs. NCBI nr
Match: gi|566171207|ref|XP_002307228.2| (hypothetical protein POPTR_0005s13810g [Populus trichocarpa]) HSP 1 Score: 125.9 bits (315), Expect = 7.900e-26 Identity = 79/190 (41.58%), Postives = 103/190 (54.21%), Query Frame = 1
BLAST of Spo21515.1 vs. NCBI nr
Match: gi|902179224|gb|KNA09309.1| (hypothetical protein SOVF_154710 isoform A [Spinacia oleracea]) HSP 1 Score: 120.6 bits (301), Expect = 3.300e-24 Identity = 89/225 (39.56%), Postives = 106/225 (47.11%), Query Frame = 1
BLAST of Spo21515.1 vs. NCBI nr
Match: gi|694402965|ref|XP_009376457.1| (PREDICTED: histone-lysine N-methyltransferase SUVR5 [Pyrus x bretschneideri]) HSP 1 Score: 115.2 bits (287), Expect = 1.400e-22 Identity = 73/190 (38.42%), Postives = 94/190 (49.47%), Query Frame = 1
BLAST of Spo21515.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQ12_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_041630 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 4.500e-28 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of Spo21515.1 vs. UniProtKB/TrEMBL
Match: B9H6A0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s13810g PE=4 SV=2) HSP 1 Score: 125.9 bits (315), Expect = 5.500e-26 Identity = 79/190 (41.58%), Postives = 103/190 (54.21%), Query Frame = 1
BLAST of Spo21515.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPW2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_154710 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 2.300e-24 Identity = 89/225 (39.56%), Postives = 106/225 (47.11%), Query Frame = 1
BLAST of Spo21515.1 vs. UniProtKB/TrEMBL
Match: A0A067K6H5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12287 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 2.200e-22 Identity = 77/186 (41.40%), Postives = 92/186 (49.46%), Query Frame = 1
BLAST of Spo21515.1 vs. UniProtKB/TrEMBL
Match: F6GX09_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00980 PE=4 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 6.300e-22 Identity = 68/189 (35.98%), Postives = 93/189 (49.21%), Query Frame = 1
BLAST of Spo21515.1 vs. ExPASy Swiss-Prot
Match: SUVR5_ARATH (Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis thaliana GN=SUVR5 PE=1 SV=3) HSP 1 Score: 76.3 bits (186), Expect = 4.500e-13 Identity = 54/166 (32.53%), Postives = 81/166 (48.80%), Query Frame = 1
BLAST of Spo21515.1 vs. TAIR (Arabidopsis)
Match: AT2G23740.2 (nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding) HSP 1 Score: 76.3 bits (186), Expect = 2.500e-14 Identity = 54/166 (32.53%), Postives = 81/166 (48.80%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21515.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21515.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21515.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo21515.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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