Spo21477 (gene)

Overview
NameSpo21477
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRibulose bisphosphate carboxylase small chain (4.1.1.39)
LocationSpoScf_01005 : 155448 .. 156295 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCTATGCTCTCCAACGCCGCGGTGGCTACCACCGTTGTCAACCGCAATGCTGGTGCTCAAGCTAGCATGGTTGGGTTGAAATCTGTTGCAGCTTTCCCACTTACCAAGAAGTCTACCAATGACCTCTCTTCCCTCCCAACCAACGGTGGAAGAGTTCAATGCATGAAGGTACTGTTTCATTTTTCTTTTTAATTTTCTTTTTAACATGGCTACTAGCCATCGATGGACAACATTCATCCCAACCGAACAAAAGACCCTTAAACACTCACGCCAACCCCAGTTGATTTATAGAGTTACAAGTTATAAGACGACTTAAAAATACTTTTACTTATATACTTGCAACTCGATTGCTAATGTTGAAAAATATAATGCAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGACCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAAGTAAGTTAATTAATTAGTCCTCCTATATTTAATTATTAATTAATAAGTATATGATATTGATAATGATAATTATAATTATATATGTTATGTTAATTGTAGCATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

mRNA sequence

ATGGCTTCCTCTATGCTCTCCAACGCCGCGGTGGCTACCACCGTTGTCAACCGCAATGCTGGTGCTCAAGCTAGCATGGTTGGGTTGAAATCTGTTGCAGCTTTCCCACTTACCAAGAAGTCTACCAATGACCTCTCTTCCCTCCCAACCAACGGTGGAAGAGTTCAATGCATGAAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGACCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAACATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

Coding sequence (CDS)

ATGGCTTCCTCTATGCTCTCCAACGCCGCGGTGGCTACCACCGTTGTCAACCGCAATGCTGGTGCTCAAGCTAGCATGGTTGGGTTGAAATCTGTTGCAGCTTTCCCACTTACCAAGAAGTCTACCAATGACCTCTCTTCCCTCCCAACCAACGGTGGAAGAGTTCAATGCATGAAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGACCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAACATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

Protein sequence

MASSMLSNAAVATTVVNRNAGAQASMVGLKSVAAFPLTKKSTNDLSSLPTNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21477.1Spo21477.1mRNA


Homology
[Close]
BLAST of Spo21477.1 vs. NCBI nr
Match: gi|902213967|gb|KNA17383.1| (hypothetical protein SOVF_080410 [Spinacia oleracea])

HSP 1 Score: 379.4 bits (973), Expect = 3.500e-102
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMVGLKSVAAFPLTKKSTNDLSSLPTNGGRVQCMKV 60
           MASSMLSNAAVATTVVNRNAGAQASMVGLKSVAAFPLTKKSTNDLSSLPTNGGRVQCMKV
Sbjct: 1   MASSMLSNAAVATTVVNRNAGAQASMVGLKSVAAFPLTKKSTNDLSSLPTNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
[Close]
BLAST of Spo21477.1 vs. NCBI nr
Match: gi|902213966|gb|KNA17382.1| (hypothetical protein SOVF_080400 [Spinacia oleracea])

HSP 1 Score: 326.2 bits (835), Expect = 3.500e-86
Identity = 161/184 (87.50%), Postives = 169/184 (91.85%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASS+LS+AAVAT  V+R   AQASMV    GLKS   FP TKK+ +D++SL +NGGRVQ
Sbjct: 1   MASSVLSSAAVAT--VSRTP-AQASMVAPFTGLKSTVGFPATKKN-DDITSLASNGGRVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP
Sbjct: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
[Close]
BLAST of Spo21477.1 vs. NCBI nr
Match: gi|3914583|sp|Q43832.1|RBS2_SPIOL (RecName: Full=Ribulose bisphosphate carboxylase small chain 2, chloroplastic; Short=RuBisCO small subunit 2; Flags: Precursor)

HSP 1 Score: 322.8 bits (826), Expect = 3.900e-85
Identity = 159/184 (86.41%), Postives = 168/184 (91.30%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASS+LS+AAVAT  V+R   AQASMV    GLKS   FP TKK+ +D++SL +NGGRVQ
Sbjct: 1   MASSVLSSAAVAT--VSRTP-AQASMVAPFTGLKSTVGFPATKKN-DDITSLASNGGRVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSP
Sbjct: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
[Close]
BLAST of Spo21477.1 vs. NCBI nr
Match: gi|902238638|gb|KNA25267.1| (hypothetical protein SOVF_008110 [Spinacia oleracea])

HSP 1 Score: 321.6 bits (823), Expect = 8.600e-85
Identity = 156/184 (84.78%), Postives = 165/184 (89.67%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMVG----LKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASS++ NA   TT V   + AQA+MVG    LKS   FP TKK+ +D++SL +NGGRVQ
Sbjct: 1   MASSLMYNA---TTAVATASVAQANMVGPFTGLKSTVGFPATKKN-DDITSLASNGGRVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP
Sbjct: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
[Close]
BLAST of Spo21477.1 vs. NCBI nr
Match: gi|2529378|gb|AAB81105.1| (ribulose 1,5-bisphosphate carboxylase small subunit [Spinacia oleracea])

HSP 1 Score: 320.9 bits (821), Expect = 1.500e-84
Identity = 158/184 (85.87%), Postives = 167/184 (90.76%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASS+LS+A VAT  V+R   AQASMV    GLKS   FP TKK+ +D++SL +NGGRVQ
Sbjct: 1   MASSVLSSARVAT--VSRTP-AQASMVAPFTGLKSTVGFPATKKN-DDITSLASNGGRVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSP
Sbjct: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
[Close]
BLAST of Spo21477.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD72_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_080410 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 2.400e-102
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMVGLKSVAAFPLTKKSTNDLSSLPTNGGRVQCMKV 60
           MASSMLSNAAVATTVVNRNAGAQASMVGLKSVAAFPLTKKSTNDLSSLPTNGGRVQCMKV
Sbjct: 1   MASSMLSNAAVATTVVNRNAGAQASMVGLKSVAAFPLTKKSTNDLSSLPTNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
[Close]
BLAST of Spo21477.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REV1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_080400 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.400e-86
Identity = 161/184 (87.50%), Postives = 169/184 (91.85%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASS+LS+AAVAT  V+R   AQASMV    GLKS   FP TKK+ +D++SL +NGGRVQ
Sbjct: 1   MASSVLSSAAVAT--VSRTP-AQASMVAPFTGLKSTVGFPATKKN-DDITSLASNGGRVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP
Sbjct: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
[Close]
BLAST of Spo21477.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD37_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_080380 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.700e-85
Identity = 159/184 (86.41%), Postives = 168/184 (91.30%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASS+LS+AAVAT  V+R   AQASMV    GLKS   FP TKK+ +D++SL +NGGRVQ
Sbjct: 1   MASSVLSSAAVAT--VSRTP-AQASMVAPFTGLKSTVGFPATKKN-DDITSLASNGGRVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSP
Sbjct: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
[Close]
BLAST of Spo21477.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2B5_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_008110 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 6.000e-85
Identity = 156/184 (84.78%), Postives = 165/184 (89.67%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMVG----LKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASS++ NA   TT V   + AQA+MVG    LKS   FP TKK+ +D++SL +NGGRVQ
Sbjct: 1   MASSLMYNA---TTAVATASVAQANMVGPFTGLKSTVGFPATKKN-DDITSLASNGGRVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP
Sbjct: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
[Close]
BLAST of Spo21477.1 vs. UniProtKB/TrEMBL
Match: O20253_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=rbcS PE=2 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.000e-84
Identity = 158/184 (85.87%), Postives = 167/184 (90.76%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASS+LS+A VAT  V+R   AQASMV    GLKS   FP TKK+ +D++SL +NGGRVQ
Sbjct: 1   MASSVLSSARVAT--VSRTP-AQASMVAPFTGLKSTVGFPATKKN-DDITSLASNGGRVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSP
Sbjct: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
[Close]
BLAST of Spo21477.1 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.400e-87
Identity = 159/184 (86.41%), Postives = 168/184 (91.30%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASS+LS+AAVAT  V+R   AQASMV    GLKS   FP TKK+ +D++SL +NGGRVQ
Sbjct: 1   MASSVLSSAAVAT--VSRTP-AQASMVAPFTGLKSTVGFPATKKN-DDITSLASNGGRVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSP
Sbjct: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
[Close]
BLAST of Spo21477.1 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.200e-78
Identity = 138/184 (75.00%), Postives = 159/184 (86.41%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASSMLSNAAVATT  +R+AGAQASMV    GLKSV+AFP+T+KS+NDLS++P+NGG+VQ
Sbjct: 1   MASSMLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CM+VWP    K++ETLSYLPPL+ + L ++V YLLNN WVPCLEFE  HGFVYREH N+P
Sbjct: 61  CMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLPMFGCTDP+QV+ ELEE KK YP AFIRIIGFD+ RQVQCVSFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYK 180
[Close]
BLAST of Spo21477.1 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.600e-75
Identity = 137/183 (74.86%), Postives = 152/183 (83.06%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASSMLSNAA+ATT     AGAQASMV    GLKS A FP+TKKS+ND SSLP+NGGRVQ
Sbjct: 1   MASSMLSNAAMATTAAT--AGAQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CM+VWP    K++ETLSYLPPL+  QL  QV YLLN  W+PC+EFE EH FVYRE+H SP
Sbjct: 61  CMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GY DGRYWTMWKLPM+GCTDPAQVLNE+EE KK YP+AFIRIIGFD+ RQVQCVSFIAYK
Sbjct: 121 GYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYK 180
[Close]
BLAST of Spo21477.1 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.200e-73
Identity = 125/178 (70.22%), Postives = 149/178 (83.71%), Query Frame = 1 

		  

Query: 6   LSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQCMKVW 65
           +S++A+AT  VNR    QAS+     GLKS  AFP+TKK+ ND SSLP+NGGRVQCMKVW
Sbjct: 4   ISSSAIAT--VNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVW 63

Query: 66  PTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYDG 125
           P   +K+YETLSYLPPL+ + L++++DYL+ NKW+PCLEFE EHGFVYREHH+SPGYYDG
Sbjct: 64  PPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDG 123

Query: 126 RYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           RYWTMWKLPMFGCTD AQV+ E+ ECKKEYPNAFIR+IGFD+ RQVQC+SFI  KP G
Sbjct: 124 RYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPG 179
[Close]
BLAST of Spo21477.1 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 273.1 bits (697), Expect = 2.200e-72
Identity = 135/184 (73.37%), Postives = 154/184 (83.70%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASSM+S+AAVAT  VNR   AQASMV    GLKSVAAFP+TKK+ ND++S+ TNGGRVQ
Sbjct: 1   MASSMVSSAAVAT--VNRTP-AQASMVAPFNGLKSVAAFPVTKKN-NDITSVATNGGRVQ 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CM+VWP    K++ETLSYLPPL+ + L ++V YLLNN WVPCLEFE  HGFVYREH N+P
Sbjct: 61  CMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLPMFGCTDP+QV+ ELEE KK YP AFIRIIGFD+ RQVQC+SFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYK 180
[Close]
BLAST of Spo21477.1 vs. TAIR (Arabidopsis)
Match: AT5G38430.1 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 272.7 bits (696), Expect = 1.600e-73
Identity = 128/184 (69.57%), Postives = 152/184 (82.61%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASSMLS+AAV T+       AQA+MV    GLKS A+FP+T+K+ ND++S+ +NGGRV 
Sbjct: 1   MASSMLSSAAVVTSP------AQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVS 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CMKVWP    K++ETLSYLP LT  +LA++VDYLL NKW+PC+EFE EHGFVYREH N+P
Sbjct: 61  CMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIAYK
Sbjct: 121 GYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYK 178
[Close]
BLAST of Spo21477.1 vs. TAIR (Arabidopsis)
Match: AT1G67090.1 (ribulose bisphosphate carboxylase small chain 1A)

HSP 1 Score: 270.8 bits (691), Expect = 6.100e-73
Identity = 126/184 (68.48%), Postives = 150/184 (81.52%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASSMLS+A +  +       AQA+MV    GLKS AAFP T+K+ ND++S+ +NGGRV 
Sbjct: 1   MASSMLSSATMVASP------AQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVN 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CM+VWP    K++ETLSYLP LT  +LA++VDYL+ NKW+PC+EFE EHGFVYREH NSP
Sbjct: 61  CMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLP+FGCTD AQVL E+EECKKEYPNAFIRIIGFD+ RQVQC+SFIAYK
Sbjct: 121 GYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYK 178
[Close]
BLAST of Spo21477.1 vs. TAIR (Arabidopsis)
Match: AT5G38420.1 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 268.1 bits (684), Expect = 4.000e-72
Identity = 125/184 (67.93%), Postives = 150/184 (81.52%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASSM S+ AV T+       AQA+MV    GLKS A+FP+T+K+ ND++S+ +NGGRV 
Sbjct: 1   MASSMFSSTAVVTSP------AQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVS 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSP 120
           CMKVWP    K++ETLSYLP L+  +LA++VDYLL NKW+PC+EFE EHGFVYREH N+P
Sbjct: 61  CMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 180
           GYYDGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIAYK
Sbjct: 121 GYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYK 178
[Close]
BLAST of Spo21477.1 vs. TAIR (Arabidopsis)
Match: AT5G38410.3 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 264.6 bits (675), Expect = 4.400e-71
Identity = 127/189 (67.20%), Postives = 152/189 (80.42%), Query Frame = 1 

		  

Query: 1   MASSMLSNAAVATTVVNRNAGAQASMV----GLKSVAAFPLTKKSTNDLSSLPTNGGRVQ 60
           MASSMLS+AAV T+       AQA+MV    GLKS AAFP+T+K+  D++S+ +NGGRV 
Sbjct: 1   MASSMLSSAAVVTSP------AQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVS 60

Query: 61  CMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFE-----TEHGFVYRE 120
           CMKVWP    K++ETLSYLP L+  +LA++VDYLL NKW+PC+EFE     T+HGFVYRE
Sbjct: 61  CMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYRE 120

Query: 121 HHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVS 180
           H N+PGYYDGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+S
Sbjct: 121 HGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCIS 180
The following BLAST results are available for this feature:
BLAST of Spo21477.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902213967|gb|KNA17383.1|3.5e-102100.hypothetical protein SOVF_0804... [more]
gi|902213966|gb|KNA17382.1|3.5e-8687.5hypothetical protein SOVF_0804... [more]
gi|3914583|sp|Q43832.1|RBS2_SPIOL3.9e-8586.4RecName: Full=Ribulose bisphos... [more]
gi|902238638|gb|KNA25267.1|8.6e-8584.7hypothetical protein SOVF_0081... [more]
gi|2529378|gb|AAB81105.1|1.5e-8485.8ribulose 1,5-bisphosphate carb... [more]
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BLAST of Spo21477.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RD72_SPIOL2.4e-102100.Ribulose bisphosphate carboxyl... [more]
A0A0K9REV1_SPIOL2.4e-8687.5Ribulose bisphosphate carboxyl... [more]
A0A0K9RD37_SPIOL2.7e-8586.4Ribulose bisphosphate carboxyl... [more]
A0A0K9S2B5_SPIOL6.0e-8584.7Ribulose bisphosphate carboxyl... [more]
O20253_SPIOL1.0e-8485.8Ribulose bisphosphate carboxyl... [more]
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BLAST of Spo21477.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RBS2_SPIOL2.4e-8786.4Ribulose bisphosphate carboxyl... [more]
RBS6_MESCR1.2e-7875.0Ribulose bisphosphate carboxyl... [more]
RBS1_AMAHP1.6e-7574.8Ribulose bisphosphate carboxyl... [more]
RBS_LACSA1.2e-7370.2Ribulose bisphosphate carboxyl... [more]
RBS1_MESCR2.2e-7273.3Ribulose bisphosphate carboxyl... [more]
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BLAST of Spo21477.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT5G38430.11.6e-7369.5Ribulose bisphosphate carboxyl... [more]
AT1G67090.16.1e-7368.4ribulose bisphosphate carboxyl... [more]
AT5G38420.14.0e-7267.9Ribulose bisphosphate carboxyl... [more]
AT5G38410.34.4e-7167.2Ribulose bisphosphate carboxyl... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000894Ribulose bisphosphate carboxylase small chain, domainGENE3D3.30.190.10coord: 58..179
score: 3.3
IPR000894Ribulose bisphosphate carboxylase small chain, domainPFAMPF00101RuBisCO_smallcoord: 69..177
score: 7.8
IPR000894Ribulose bisphosphate carboxylase small chain, domainSMARTSM00961RuBisCO_small_2_acoord: 68..177
score: 2.2
IPR000894Ribulose bisphosphate carboxylase small chain, domainunknownSSF55239RuBisCO, small subunitcoord: 58..179
score: 7.59
IPR024680Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminalPFAMPF12338RbcScoord: 2..44
score: 1.1
IPR024681Ribulose bisphosphate carboxylase, small chainPRINTSPR00152RUBISCOSMALLcoord: 151..177
score: 5.5E-67coord: 46..64
score: 5.5E-67coord: 95..110
score: 5.5E-67coord: 117..146
score: 5.5E-67coord: 19..36
score: 5.5E-67coord: 67..93
score: 5.5
NoneNo IPR availablePANTHERPTHR31262FAMILY NOT NAMEDcoord: 2..180
score: 1.3E
NoneNo IPR availablePANTHERPTHR31262:SF4RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATEDcoord: 2..180
score: 1.3E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0006364 rRNA processing
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0009657 plastid organization
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0006006 glucose metabolic process
biological_process GO:0015976 carbon utilization
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015977 carbon fixation
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0019643 reductive tricarboxylic acid cycle
biological_process GO:0009651 response to salt stress
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006096 glycolytic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0009853 photorespiration
biological_process GO:0015979 photosynthesis
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0044070 regulation of anion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0048046 apoplast
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009316 3-isopropylmalate dehydratase complex
cellular_component GO:0016020 membrane
molecular_function GO:0051287 NAD binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0047100 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0050486 intramolecular transferase activity, transferring hydroxy groups
molecular_function GO:0003994 aconitate hydratase activity
molecular_function GO:0003861 3-isopropylmalate dehydratase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0008308 voltage-gated anion channel activity
RNA-Seq Expression