Spo21476 (gene)

Overview
NameSpo21476
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRibulose bisphosphate carboxylase small chain (4.1.1.39)
LocationSpoScf_01005 : 95792 .. 96599 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAGCTTGATGTACAACGCCACCACCGCCGTGGCTACAGCCAGCGTAGCTCAGGCTAACATGGTGGGTCCTTTCACCGGCTTGAAGTCTACCGTAGGCTTCCCTGTTACCAAGAAGAACGATGACATTACCTCCCTTGCTAGCAACGGTGGAAGAGTCCAGTGCATGAAGGTAATCGATTACTACTCGATCTGTAATTCCACTATTCCACTTGGTAGTAGATAATGGAAAAATACATATATATATATATATATATATATATTAGTGACAGATTGATAACATGAAACAAGACCAATTAATTAATTAATTATCTAATTTGTTGAAAAATATAATGCAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGACCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAAGTAAGTTAATTAATTAGTCCTCCTATATTTAATTATTAATTAATAAGTATATGATATTGATAATGATAATTATAATTATATATGTTATGTTAATTGTAGCATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

mRNA sequence

ATGGCTTCCAGCTTGATGTACAACGCCACCACCGCCGTGGCTACAGCCAGCGTAGCTCAGGCTAACATGGTGGGTCCTTTCACCGGCTTGAAGTCTACCGTAGGCTTCCCTGTTACCAAGAAGAACGATGACATTACCTCCCTTGCTAGCAACGGTGGAAGAGTCCAGTGCATGAAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGACCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAACATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

Coding sequence (CDS)

ATGGCTTCCAGCTTGATGTACAACGCCACCACCGCCGTGGCTACAGCCAGCGTAGCTCAGGCTAACATGGTGGGTCCTTTCACCGGCTTGAAGTCTACCGTAGGCTTCCCTGTTACCAAGAAGAACGATGACATTACCTCCCTTGCTAGCAACGGTGGAAGAGTCCAGTGCATGAAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGACCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAACATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

Protein sequence

MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21476.1Spo21476.1mRNA


Homology
[Close]
BLAST of Spo21476.1 vs. NCBI nr
Match: gi|902238638|gb|KNA25267.1| (hypothetical protein SOVF_008110 [Spinacia oleracea])

HSP 1 Score: 381.7 bits (979), Expect = 7.000e-103
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
[Close]
BLAST of Spo21476.1 vs. NCBI nr
Match: gi|902213966|gb|KNA17382.1| (hypothetical protein SOVF_080400 [Spinacia oleracea])

HSP 1 Score: 355.9 bits (912), Expect = 4.100e-95
Identity = 165/180 (91.67%), Postives = 171/180 (95.00%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
[Close]
BLAST of Spo21476.1 vs. NCBI nr
Match: gi|3914583|sp|Q43832.1|RBS2_SPIOL (RecName: Full=Ribulose bisphosphate carboxylase small chain 2, chloroplastic; Short=RuBisCO small subunit 2; Flags: Precursor)

HSP 1 Score: 352.4 bits (903), Expect = 4.500e-94
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180
[Close]
BLAST of Spo21476.1 vs. NCBI nr
Match: gi|2529378|gb|AAB81105.1| (ribulose 1,5-bisphosphate carboxylase small subunit [Spinacia oleracea])

HSP 1 Score: 352.1 bits (902), Expect = 5.900e-94
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSARVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180
[Close]
BLAST of Spo21476.1 vs. NCBI nr
Match: gi|691189059|gb|AIR75139.1| (chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial [Spinacia turkestanica])

HSP 1 Score: 332.0 bits (850), Expect = 6.400e-88
Identity = 153/165 (92.73%), Postives = 157/165 (95.15%), Query Frame = 1 

		  

Query: 9   ATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKVWPTQNMKR 68
           A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKVWPTQNMKR
Sbjct: 1   AAVATVSRTSAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKR 60

Query: 69  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYDGRYWTMWK 128
           YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYDGRYWTMWK
Sbjct: 61  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWK 120

Query: 129 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 174
           LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI
Sbjct: 121 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 165
[Close]
BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2B5_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_008110 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 4.900e-103
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
[Close]
BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REV1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_080400 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 2.900e-95
Identity = 165/180 (91.67%), Postives = 171/180 (95.00%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
[Close]
BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD37_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_080380 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.200e-94
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180
[Close]
BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Match: O20253_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=rbcS PE=2 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 4.100e-94
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSARVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180
[Close]
BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Match: A0A089VLB2_9CARY (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Spinacia turkestanica GN=rbcS PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 4.400e-88
Identity = 153/165 (92.73%), Postives = 157/165 (95.15%), Query Frame = 1 

		  

Query: 9   ATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKVWPTQNMKR 68
           A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKVWPTQNMKR
Sbjct: 1   AAVATVSRTSAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKR 60

Query: 69  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYDGRYWTMWK 128
           YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYDGRYWTMWK
Sbjct: 61  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWK 120

Query: 129 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 174
           LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI
Sbjct: 121 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 165
[Close]
BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 2.800e-96
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180
[Close]
BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.500e-78
Identity = 136/180 (75.56%), Postives = 152/180 (84.44%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASSLM NA TAV  AS AQANMV PF GLKS   FPVT+K++DITS+ASNGGRVQCM+V
Sbjct: 1   MASSLMSNAITAVVGASGAQANMVAPFNGLKSIASFPVTRKSNDITSIASNGGRVQCMQV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WP    K++ETLSYLPPL+  QL  QV YLLNN W+PC+EFE EH FVYRE+H SPGY D
Sbjct: 61  WPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPM+GCTDPAQVLNE+EE KK YP+AFIRIIGFD+ RQVQCVSFIA+KP GY
Sbjct: 121 GRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPGY 180
[Close]
BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.700e-77
Identity = 136/181 (75.14%), Postives = 152/181 (83.98%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATA-SVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMK 60
           MASSLM NA T +A A + AQANMV PF GLKS   FPVT+KN+DITS+ASNGGRVQCM+
Sbjct: 1   MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRKNNDITSVASNGGRVQCMQ 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP   MK++ETLSYLPPL+ + L ++V YLLNN WVPCLEFE  HGFVYREH N+PGYY
Sbjct: 61  VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLPMFGCTDP+QV+ ELEE KK YP AFIRIIGFD+ RQVQCVSFIAYKP  
Sbjct: 121 DGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKPAS 180
[Close]
BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 8.600e-77
Identity = 134/181 (74.03%), Postives = 151/181 (83.43%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATA-SVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMK 60
           MASSLM NA T +A A + AQANMV PF GLKS   FPVT+KN+DITS+ASNGGRVQCM+
Sbjct: 1   MASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRKNNDITSVASNGGRVQCMQ 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLPPL+ + L ++V YLLNN WVPCLEFE  HGFVYREH N+PGYY
Sbjct: 61  VWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLPMFGCTDP+QV+ ELEE KK YP AFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 180
[Close]
BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.600e-76
Identity = 136/181 (75.14%), Postives = 151/181 (83.43%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASV-AQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMK 60
           MASSLM NA T +A A+  AQANMV PF GLKS   FPVT+KN+DITS+ASNGGRVQCM 
Sbjct: 1   MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRKNNDITSVASNGGRVQCM- 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP   MK++ETLSYLPPL+ + L ++V YLLNN WVPCLEFE  HGFVYREH N+PGYY
Sbjct: 61  VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLPMFGCTDP+QV+ ELEE KK YP AFIRIIGFD+ RQVQCVSFIAYKP  
Sbjct: 121 DGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKPAS 180
[Close]
BLAST of Spo21476.1 vs. TAIR (Arabidopsis)
Match: AT1G67090.1 (ribulose bisphosphate carboxylase small chain 1A)

HSP 1 Score: 280.4 bits (716), Expect = 7.700e-76
Identity = 129/181 (71.27%), Postives = 150/181 (82.87%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKK-NDDITSLASNGGRVQCMK 60
           MASS++ +AT     AS AQA MV PF GLKS+  FP T+K N+DITS+ SNGGRV CM+
Sbjct: 1   MASSMLSSATMV---ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQ 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLP LT  +LA++VDYL+ NKW+PC+EFE EHGFVYREH NSPGYY
Sbjct: 61  VWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLP+FGCTD AQVL E+EECKKEYPNAFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPS 178
[Close]
BLAST of Spo21476.1 vs. TAIR (Arabidopsis)
Match: AT5G38430.1 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 279.3 bits (713), Expect = 1.700e-75
Identity = 129/181 (71.27%), Postives = 150/181 (82.87%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKK-NDDITSLASNGGRVQCMK 60
           MASS++   ++A    S AQA MV PFTGLKS+  FPVT+K N+DITS+ SNGGRV CMK
Sbjct: 1   MASSML---SSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMK 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLP LT  +LA++VDYLL NKW+PC+EFE EHGFVYREH N+PGYY
Sbjct: 61  VWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPS 178
[Close]
BLAST of Spo21476.1 vs. TAIR (Arabidopsis)
Match: AT5G38420.1 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 278.1 bits (710), Expect = 3.800e-75
Identity = 131/181 (72.38%), Postives = 152/181 (83.98%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKK-NDDITSLASNGGRVQCMK 60
           MASS+   ++TAV T S AQA MV PFTGLKS+  FPVT+K N+DITS+ SNGGRV CMK
Sbjct: 1   MASSMF--SSTAVVT-SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMK 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLP L+  +LA++VDYLL NKW+PC+EFE EHGFVYREH N+PGYY
Sbjct: 61  VWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPS 178
[Close]
BLAST of Spo21476.1 vs. TAIR (Arabidopsis)
Match: AT5G38410.3 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 273.1 bits (697), Expect = 1.200e-73
Identity = 129/186 (69.35%), Postives = 151/186 (81.18%), Query Frame = 1 

		  

Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKK-NDDITSLASNGGRVQCMK 60
           MASS++   ++A    S AQA MV PFTGLKS+  FPVT+K N DITS+ASNGGRV CMK
Sbjct: 1   MASSML---SSAAVVTSPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMK 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFE-----TEHGFVYREHHN 120
           VWP    K++ETLSYLP L+  +LA++VDYLL NKW+PC+EFE     T+HGFVYREH N
Sbjct: 61  VWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGN 120

Query: 121 SPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIA 180
           +PGYYDGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIA
Sbjct: 121 TPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 180
The following BLAST results are available for this feature:
BLAST of Spo21476.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902238638|gb|KNA25267.1|7.0e-10399.4hypothetical protein SOVF_0081... [more]
gi|902213966|gb|KNA17382.1|4.1e-9591.6hypothetical protein SOVF_0804... [more]
gi|3914583|sp|Q43832.1|RBS2_SPIOL4.5e-9490.5RecName: Full=Ribulose bisphos... [more]
gi|2529378|gb|AAB81105.1|5.9e-9490.5ribulose 1,5-bisphosphate carb... [more]
gi|691189059|gb|AIR75139.1|6.4e-8892.7chloroplast ribulose-1,5-bisph... [more]
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BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S2B5_SPIOL4.9e-10399.4Ribulose bisphosphate carboxyl... [more]
A0A0K9REV1_SPIOL2.9e-9591.6Ribulose bisphosphate carboxyl... [more]
A0A0K9RD37_SPIOL3.2e-9490.5Ribulose bisphosphate carboxyl... [more]
O20253_SPIOL4.1e-9490.5Ribulose bisphosphate carboxyl... [more]
A0A089VLB2_9CARY4.4e-8892.7Ribulose bisphosphate carboxyl... [more]
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BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RBS2_SPIOL2.8e-9690.5Ribulose bisphosphate carboxyl... [more]
RBS3_AMAHP3.5e-7875.5Ribulose bisphosphate carboxyl... [more]
RBS4_MESCR1.7e-7775.1Ribulose bisphosphate carboxyl... [more]
RBS3_MESCR8.6e-7774.0Ribulose bisphosphate carboxyl... [more]
RBS5_MESCR5.6e-7675.1Ribulose bisphosphate carboxyl... [more]
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BLAST of Spo21476.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT1G67090.17.7e-7671.2ribulose bisphosphate carboxyl... [more]
AT5G38430.11.7e-7571.2Ribulose bisphosphate carboxyl... [more]
AT5G38420.13.8e-7572.3Ribulose bisphosphate carboxyl... [more]
AT5G38410.31.2e-7369.3Ribulose bisphosphate carboxyl... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000894Ribulose bisphosphate carboxylase small chain, domainGENE3D3.30.190.10coord: 58..179
score: 3.3
IPR000894Ribulose bisphosphate carboxylase small chain, domainPFAMPF00101RuBisCO_smallcoord: 69..177
score: 7.8
IPR000894Ribulose bisphosphate carboxylase small chain, domainSMARTSM00961RuBisCO_small_2_acoord: 68..177
score: 2.2
IPR000894Ribulose bisphosphate carboxylase small chain, domainunknownSSF55239RuBisCO, small subunitcoord: 58..179
score: 7.59
IPR024680Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminalPFAMPF12338RbcScoord: 2..42
score: 6.6
IPR024681Ribulose bisphosphate carboxylase, small chainPRINTSPR00152RUBISCOSMALLcoord: 151..177
score: 4.3E-73coord: 95..110
score: 4.3E-73coord: 117..146
score: 4.3E-73coord: 46..64
score: 4.3E-73coord: 67..93
score: 4.3E-73coord: 20..37
score: 4.3
NoneNo IPR availablePANTHERPTHR31262FAMILY NOT NAMEDcoord: 2..180
score: 2.7E
NoneNo IPR availablePANTHERPTHR31262:SF4RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATEDcoord: 2..180
score: 2.7E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0009657 plastid organization
biological_process GO:0030001 metal ion transport
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006094 gluconeogenesis
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006096 glycolytic process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0019643 reductive tricarboxylic acid cycle
biological_process GO:0009651 response to salt stress
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0006006 glucose metabolic process
biological_process GO:0015976 carbon utilization
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006820 anion transport
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0006520 cellular amino acid metabolic process
biological_process GO:0044070 regulation of anion transport
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0055085 transmembrane transport
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0015979 photosynthesis
biological_process GO:0015977 carbon fixation
biological_process GO:0006446 regulation of translational initiation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0000785 chromatin
cellular_component GO:0048046 apoplast
cellular_component GO:0005634 nucleus
cellular_component GO:0009316 3-isopropylmalate dehydratase complex
cellular_component GO:0000786 nucleosome
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
molecular_function GO:0050661 NADP binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0008308 voltage-gated anion channel activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0015267 channel activity
molecular_function GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
molecular_function GO:0005524 ATP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0050486 intramolecular transferase activity, transferring hydroxy groups
molecular_function GO:0047100 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003861 3-isopropylmalate dehydratase activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0003994 aconitate hydratase activity
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0016491 oxidoreductase activity
RNA-Seq Expression