Spo21472 (gene)

Overview
NameSpo21472
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRibulose bisphosphate carboxylase small chain (4.1.1.39)
LocationSpoScf_01005 : 185807 .. 187065 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTCTGAAGGAAAGCATGGTCTGAAATTCATAGCTAAAAAGGTAGAAATATAAACAAATTAAGGATAGGTAGTATCTCATGAATTCACCACCATCACACATTTTTCTTATCATCTTCCTTCTTAAGATCAGATAGGATTTGGGTTTCTTCCACGTGGCACCTATCCATGGTGCTTAATTTCCATGCTGTAATTAAATTCATAAATATACACAAACATTATTAAAATTCCTCAATTCCCTAACCTTGTGTGTGTGGTCGCTGAAGTGTAATGTCATCACTTAACAAAACCAACGGCTAAGATTATCCTAAAATCATATCCACTTCTTTAAAATAACACAGTAGTATTATATATAGAAAGAGTTGTAACATAGAAATTAACTAAGCAAGAGATCGAGTTTGTATAATACTAATAATAGTAAGCAAAGAGGAGTGAGTGAGTAAGTACGTGTTACAAAATGGCTTCCTCCGTCCTCTCCTCCGCCGCTGTCGCCACCGTCAGCCGTACCCCGGCTCAAGCCAGCATGGTGGCTCCTTTCACCGGCTTGAAGTCTACCGTAGGCTTCCCTGCCACCAAGAAGAACGATGACATTACCTCCCTTGCTAGCAACGGTGGAAGAGTCCAGTGCATGAAGGTAATCGATTACTACTCGATCTGTAATTCCACTATTCCACTTGGTAGTAGATAATGGAAAAATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATNAAATATAATGCAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGATCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAAGTAAGTTAATTAATTAGTCCTCCTATATTTAATTATTAATTAATAAGTATATGATATTGATAATGATAATTATAATTATATATGTTATGTTAATTGTAGCATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

mRNA sequence

GTTTCTGAAGGAAAGCATGGTCTGAAATTCATAGCTAAAAAGGTAGAAATATAAACAAATTAAGGATAGGTAGTATCTCATGAATTCACCACCATCACACATTTTTCTTATCATCTTCCTTCTTAAGATCAGATAGGATTTGGGTTTCTTCCACGTGGCACCTATCCATGGTGCTTAATTTCCATGCTGTAATTAAATTCATAAATATACACAAACATTATTAAAATTCCTCAATTCCCTAACCTTGTGTGTGTGGTCGCTGAAGTGTAATGTCATCACTTAACAAAACCAACGGCTAAGATTATCCTAAAATCATATCCACTTCTTTAAAATAACACAGTAGTATTATATATAGAAAGAGTTGTAACATAGAAATTAACTAAGCAAGAGATCGAGTTTGTATAATACTAATAATAGTAAGCAAAGAGGAGTGAGTGAGTAAGTACGTGTTACAAAATGGCTTCCTCCGTCCTCTCCTCCGCCGCTGTCGCCACCGTCAGCCGTACCCCGGCTCAAGCCAGCATGGTGGCTCCTTTCACCGGCTTGAAGTCTACCGTAGGCTTCCCTGCCACCAAGAAGAACGATGACATTACCTCCCTTGCTAGCAACGGTGGAAGAGTCCAGTGCATGAAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGATCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAACATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

Coding sequence (CDS)

ATGGCTTCCTCCGTCCTCTCCTCCGCCGCTGTCGCCACCGTCAGCCGTACCCCGGCTCAAGCCAGCATGGTGGCTCCTTTCACCGGCTTGAAGTCTACCGTAGGCTTCCCTGCCACCAAGAAGAACGATGACATTACCTCCCTTGCTAGCAACGGTGGAAGAGTCCAGTGCATGAAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGATCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAACATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

Protein sequence

MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21472.1Spo21472.1mRNA


Homology
[Close]
BLAST of Spo21472.1 vs. NCBI nr
Match: gi|902213966|gb|KNA17382.1| (hypothetical protein SOVF_080400 [Spinacia oleracea])

HSP 1 Score: 378.6 bits (971), Expect = 5.900e-102
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60
           MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
[Close]
BLAST of Spo21472.1 vs. NCBI nr
Match: gi|3914583|sp|Q43832.1|RBS2_SPIOL (RecName: Full=Ribulose bisphosphate carboxylase small chain 2, chloroplastic; Short=RuBisCO small subunit 2; Flags: Precursor)

HSP 1 Score: 375.2 bits (962), Expect = 6.500e-101
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60
           MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180
[Close]
BLAST of Spo21472.1 vs. NCBI nr
Match: gi|2529378|gb|AAB81105.1| (ribulose 1,5-bisphosphate carboxylase small subunit [Spinacia oleracea])

HSP 1 Score: 373.2 bits (957), Expect = 2.500e-100
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60
           MASSVLSSA VATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSARVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180
[Close]
BLAST of Spo21472.1 vs. NCBI nr
Match: gi|902238638|gb|KNA25267.1| (hypothetical protein SOVF_008110 [Spinacia oleracea])

HSP 1 Score: 355.5 bits (911), Expect = 5.400e-95
Identity = 166/180 (92.22%), Postives = 172/180 (95.56%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
[Close]
BLAST of Spo21472.1 vs. NCBI nr
Match: gi|691189053|gb|AIR75136.1| (chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial [Spinacia oleracea])

HSP 1 Score: 350.1 bits (897), Expect = 2.300e-93
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 1 

		  

Query: 9   AAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKR 68
           AAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKR
Sbjct: 1   AAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKR 60

Query: 69  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYDGRYWTMWK 128
           YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYDGRYWTMWK
Sbjct: 61  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWK 120

Query: 129 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 174
           LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI
Sbjct: 121 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 165
[Close]
BLAST of Spo21472.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REV1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_080400 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 4.100e-102
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60
           MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
[Close]
BLAST of Spo21472.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD37_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_080380 PE=3 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 4.600e-101
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60
           MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180
[Close]
BLAST of Spo21472.1 vs. UniProtKB/TrEMBL
Match: O20253_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=rbcS PE=2 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 1.700e-100
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60
           MASSVLSSA VATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSARVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180
[Close]
BLAST of Spo21472.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2B5_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_008110 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 3.700e-95
Identity = 166/180 (92.22%), Postives = 172/180 (95.56%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
[Close]
BLAST of Spo21472.1 vs. UniProtKB/TrEMBL
Match: A0A089VME0_SPIOL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Spinacia oleracea GN=rbcS PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.600e-93
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 1 

		  

Query: 9   AAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKR 68
           AAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKR
Sbjct: 1   AAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKR 60

Query: 69  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYDGRYWTMWK 128
           YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYDGRYWTMWK
Sbjct: 61  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWK 120

Query: 129 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 174
           LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI
Sbjct: 121 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 165
[Close]
BLAST of Spo21472.1 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 4.100e-103
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60
           MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180
[Close]
BLAST of Spo21472.1 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 298.5 bits (763), Expect = 4.900e-80
Identity = 138/180 (76.67%), Postives = 156/180 (86.67%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60
           MASS++SSAAVATV+RTPAQASMVAPF GLKS   FP TKKN+DITS+A+NGGRVQCM+V
Sbjct: 1   MASSMVSSAAVATVNRTPAQASMVAPFNGLKSVAAFPVTKKNNDITSVATNGGRVQCMQV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WP    K++ETLSYLPPL+ + L ++V YLLNN WVPCLEFE  HGFVYREH N+PGYYD
Sbjct: 61  WPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDP+QV+ ELEE KK YP AFIRIIGFD+ RQVQC+SFIAYKP  Y
Sbjct: 121 GRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPASY 180
[Close]
BLAST of Spo21472.1 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.700e-77
Identity = 140/182 (76.92%), Postives = 157/182 (86.26%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKND--DITSLASNGGRVQCM 60
           MASS++SSAAVAT S   AQASMVAPFTGLKS   FP TKKN+  DITSLASNGGRV+CM
Sbjct: 1   MASSIVSSAAVATRSNV-AQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCM 60

Query: 61  KVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGY 120
           +VWP  NMK+YETLSYLP L+ +QL ++V+YLL N WVPCLEFETEHGFVYRE+H SPGY
Sbjct: 61  QVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPE 180
           YDGRYWTMWKLPMFGCTD  QVL E++E KK YP A+IRIIGFD+ RQVQC+SFIAYKPE
Sbjct: 121 YDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPE 180
[Close]
BLAST of Spo21472.1 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.600e-77
Identity = 135/181 (74.59%), Postives = 155/181 (85.64%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMK 60
           MASS+LSSAAV T   +PAQA+MVAPFTGLKS+  FP T+K N+DITS+ SNGGRV CMK
Sbjct: 1   MASSMLSSAAVVT---SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMK 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLP LT  +LA++VDYLL NKW+PC+EFE EHGFVYREH N+PGYY
Sbjct: 61  VWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPS 178
[Close]
BLAST of Spo21472.1 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.600e-77
Identity = 139/182 (76.37%), Postives = 157/182 (86.26%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKND--DITSLASNGGRVQCM 60
           MASS++SSAAVAT S   AQASMVAPFTGLKS   FP TKKN+  DITSLASNGGRV+CM
Sbjct: 1   MASSIVSSAAVATRSNV-AQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCM 60

Query: 61  KVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGY 120
           +VWP  NMK+YETLSYLP L+ +QL ++V+YLL N WVPCLEFETEHGFVYREH++SPGY
Sbjct: 61  QVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPE 180
           YDGRYWTMWKLPMFGCTD  QVL E++E K  YP A+IRIIGFD+ RQVQC+SFIAYKPE
Sbjct: 121 YDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPE 180
[Close]
BLAST of Spo21472.1 vs. TAIR (Arabidopsis)
Match: AT5G38430.1 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 288.1 bits (736), Expect = 3.700e-78
Identity = 135/181 (74.59%), Postives = 155/181 (85.64%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMK 60
           MASS+LSSAAV T   +PAQA+MVAPFTGLKS+  FP T+K N+DITS+ SNGGRV CMK
Sbjct: 1   MASSMLSSAAVVT---SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMK 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLP LT  +LA++VDYLL NKW+PC+EFE EHGFVYREH N+PGYY
Sbjct: 61  VWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPS 178
[Close]
BLAST of Spo21472.1 vs. TAIR (Arabidopsis)
Match: AT1G67090.1 (ribulose bisphosphate carboxylase small chain 1A)

HSP 1 Score: 286.6 bits (732), Expect = 1.100e-77
Identity = 133/181 (73.48%), Postives = 155/181 (85.64%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMK 60
           MASS+LSSA   T+  +PAQA+MVAPF GLKS+  FPAT+K N+DITS+ SNGGRV CM+
Sbjct: 1   MASSMLSSA---TMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQ 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLP LT  +LA++VDYL+ NKW+PC+EFE EHGFVYREH NSPGYY
Sbjct: 61  VWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLP+FGCTD AQVL E+EECKKEYPNAFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPS 178
[Close]
BLAST of Spo21472.1 vs. TAIR (Arabidopsis)
Match: AT5G38420.1 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 283.5 bits (724), Expect = 9.100e-77
Identity = 132/181 (72.93%), Postives = 153/181 (84.53%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMK 60
           MASS+ SS AV T   +PAQA+MVAPFTGLKS+  FP T+K N+DITS+ SNGGRV CMK
Sbjct: 1   MASSMFSSTAVVT---SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMK 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLP L+  +LA++VDYLL NKW+PC+EFE EHGFVYREH N+PGYY
Sbjct: 61  VWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPS 178
[Close]
BLAST of Spo21472.1 vs. TAIR (Arabidopsis)
Match: AT5G38410.3 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 282.0 bits (720), Expect = 2.700e-76
Identity = 135/186 (72.58%), Postives = 156/186 (83.87%), Query Frame = 1 

		  

Query: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMK 60
           MASS+LSSAAV T   +PAQA+MVAPFTGLKS+  FP T+K N DITS+ASNGGRV CMK
Sbjct: 1   MASSMLSSAAVVT---SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMK 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFE-----TEHGFVYREHHN 120
           VWP    K++ETLSYLP L+  +LA++VDYLL NKW+PC+EFE     T+HGFVYREH N
Sbjct: 61  VWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGN 120

Query: 121 SPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIA 180
           +PGYYDGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIA
Sbjct: 121 TPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 180
The following BLAST results are available for this feature:
BLAST of Spo21472.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902213966|gb|KNA17382.1|5.9e-102100.hypothetical protein SOVF_0804... [more]
gi|3914583|sp|Q43832.1|RBS2_SPIOL6.5e-10198.8RecName: Full=Ribulose bisphos... [more]
gi|2529378|gb|AAB81105.1|2.5e-10098.3ribulose 1,5-bisphosphate carb... [more]
gi|902238638|gb|KNA25267.1|5.4e-9592.2hypothetical protein SOVF_0081... [more]
gi|691189053|gb|AIR75136.1|2.3e-9399.3chloroplast ribulose-1,5-bisph... [more]
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BLAST of Spo21472.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9REV1_SPIOL4.1e-102100.Ribulose bisphosphate carboxyl... [more]
A0A0K9RD37_SPIOL4.6e-10198.8Ribulose bisphosphate carboxyl... [more]
O20253_SPIOL1.7e-10098.3Ribulose bisphosphate carboxyl... [more]
A0A0K9S2B5_SPIOL3.7e-9592.2Ribulose bisphosphate carboxyl... [more]
A0A089VME0_SPIOL1.6e-9399.3Ribulose bisphosphate carboxyl... [more]
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BLAST of Spo21472.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RBS2_SPIOL4.1e-10398.8Ribulose bisphosphate carboxyl... [more]
RBS1_MESCR4.9e-8076.6Ribulose bisphosphate carboxyl... [more]
RBS3_SOLTU1.7e-7776.9Ribulose bisphosphate carboxyl... [more]
RBS1B_ARATH6.6e-7774.5Ribulose bisphosphate carboxyl... [more]
RBS0_SOLTU6.6e-7776.3Ribulose bisphosphate carboxyl... [more]
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BLAST of Spo21472.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT5G38430.13.7e-7874.5Ribulose bisphosphate carboxyl... [more]
AT1G67090.11.1e-7773.4ribulose bisphosphate carboxyl... [more]
AT5G38420.19.1e-7772.9Ribulose bisphosphate carboxyl... [more]
AT5G38410.32.7e-7672.5Ribulose bisphosphate carboxyl... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000894Ribulose bisphosphate carboxylase small chain, domainGENE3D3.30.190.10coord: 58..179
score: 3.3
IPR000894Ribulose bisphosphate carboxylase small chain, domainPFAMPF00101RuBisCO_smallcoord: 69..177
score: 7.8
IPR000894Ribulose bisphosphate carboxylase small chain, domainSMARTSM00961RuBisCO_small_2_acoord: 68..177
score: 2.2
IPR000894Ribulose bisphosphate carboxylase small chain, domainunknownSSF55239RuBisCO, small subunitcoord: 58..179
score: 7.59
IPR024680Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminalPFAMPF12338RbcScoord: 2..42
score: 4.3
IPR024681Ribulose bisphosphate carboxylase, small chainPRINTSPR00152RUBISCOSMALLcoord: 20..37
score: 7.3E-74coord: 151..177
score: 7.3E-74coord: 95..110
score: 7.3E-74coord: 117..146
score: 7.3E-74coord: 46..64
score: 7.3E-74coord: 67..93
score: 7.3
NoneNo IPR availablePANTHERPTHR31262FAMILY NOT NAMEDcoord: 2..180
score: 4.5E
NoneNo IPR availablePANTHERPTHR31262:SF4RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATEDcoord: 2..180
score: 4.5E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015977 carbon fixation
biological_process GO:0015976 carbon utilization
biological_process GO:0006094 gluconeogenesis
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019643 reductive tricarboxylic acid cycle
biological_process GO:0009651 response to salt stress
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0006006 glucose metabolic process
biological_process GO:0006334 nucleosome assembly
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009657 plastid organization
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006364 rRNA processing
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0006820 anion transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0044070 regulation of anion transport
biological_process GO:0030001 metal ion transport
biological_process GO:0006096 glycolytic process
biological_process GO:0015979 photosynthesis
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006412 translation
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009853 photorespiration
biological_process GO:0006446 regulation of translational initiation
cellular_component GO:0048046 apoplast
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016020 membrane
cellular_component GO:0009316 3-isopropylmalate dehydratase complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0000786 nucleosome
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0047100 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0015267 channel activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0004659 prenyltransferase activity
molecular_function GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
molecular_function GO:0050486 intramolecular transferase activity, transferring hydroxy groups
molecular_function GO:0003994 aconitate hydratase activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0003861 3-isopropylmalate dehydratase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008308 voltage-gated anion channel activity
RNA-Seq Expression