Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCAGTTAGCATGGCAGCTTCTTTCCTCGGTGGCGCCGCCACTCTTTCTCCTGCAGCTGCTTCTCAAAGGAGGCTTGTCATCACCAACAGTGTTAAACCCAACACAGTGAAGCTCAGCTCTGAGACCAATCAAGAGAGCAGCAACAATGGAAGGAGAGAGATGATGTTTGCTGTCGCAGCTGCTGCCATTTCTTCTGTTGCCGGAGTTGCAATGGCCGATGAGCCCAAACGTGGTACCCCAGAAGCTAAGAAGAGCTACGGTCCTGTTTGCGTTGCCAACCCAACTGCTAGGATCTGTAATTACTGATAATCATGCACTTTCTTATCACTCTTCTGCATTTCAATTTCAATTTCAATTTCAATTTTGATGATTATGATTATCATTATTATGTTATTTAATCTTCAATTGAGAATTGAGAACTCTGCTTAATTATATGAATCTTATTAATTAATCAATTAAAGTTAATTTAGTACTCCATATTATACTATTATCATCCGTTATGCTTTCATTTACTGCTGCCTTAATTCAGTATAATTGTTGTTTTGCTTCATCTTCTAGTGATCAAAACTCAAAAGTTGATTGATCTACCCTTTTCTTTTCATTTATATTCCACATCTCTTTGCCTTGTTTGCTTATTATTGCAGTTTATTGA ATGGCTTCAGTTAGCATGGCAGCTTCTTTCCTCGGTGGCGCCGCCACTCTTTCTCCTGCAGCTGCTTCTCAAAGGAGGCTTGTCATCACCAACAGTGTTAAACCCAACACAGTGAAGCTCAGCTCTGAGACCAATCAAGAGAGCAGCAACAATGGAAGGAGAGAGATGATGTTTGCTGTCGCAGCTGCTGCCATTTCTTCTGTTGCCGGAGTTGCAATGGCCGATGAGCCCAAACGTGGTACCCCAGAAGCTAAGAAGAGCTACGGTCCTGTTTGCGTTGCCAACCCAACTGCTAGGATCTTTTATTGA ATGGCTTCAGTTAGCATGGCAGCTTCTTTCCTCGGTGGCGCCGCCACTCTTTCTCCTGCAGCTGCTTCTCAAAGGAGGCTTGTCATCACCAACAGTGTTAAACCCAACACAGTGAAGCTCAGCTCTGAGACCAATCAAGAGAGCAGCAACAATGGAAGGAGAGAGATGATGTTTGCTGTCGCAGCTGCTGCCATTTCTTCTGTTGCCGGAGTTGCAATGGCCGATGAGCCCAAACGTGGTACCCCAGAAGCTAAGAAGAGCTACGGTCCTGTTTGCGTTGCCAACCCAACTGCTAGGATCTTTTATTGA MASVSMAASFLGGAATLSPAAASQRRLVITNSVKPNTVKLSSETNQESSNNGRREMMFAVAAAAISSVAGVAMADEPKRGTPEAKKSYGPVCVANPTARIFY Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21295.1 vs. NCBI nr
Match: gi|902159957|gb|KNA06373.1| (hypothetical protein SOVF_181620 [Spinacia oleracea]) HSP 1 Score: 181.4 bits (459), Expect = 7.900e-43 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1
BLAST of Spo21295.1 vs. NCBI nr
Match: gi|731316351|ref|XP_010695154.1| (PREDICTED: photosystem II 5 kDa protein, chloroplastic-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 144.4 bits (363), Expect = 1.100e-31 Identity = 79/100 (79.00%), Postives = 88/100 (88.00%), Query Frame = 1
BLAST of Spo21295.1 vs. NCBI nr
Match: gi|225450089|ref|XP_002277909.1| (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Vitis vinifera]) HSP 1 Score: 105.5 bits (262), Expect = 5.500e-20 Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 1
BLAST of Spo21295.1 vs. NCBI nr
Match: gi|1012356749|gb|KYP67934.1| (hypothetical protein KK1_021549 [Cajanus cajan]) HSP 1 Score: 102.4 bits (254), Expect = 4.600e-19 Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = 1
BLAST of Spo21295.1 vs. NCBI nr
Match: gi|1012035467|ref|XP_015953059.1| (PREDICTED: photosystem II 5 kDa protein, chloroplastic-like [Arachis duranensis]) HSP 1 Score: 101.7 bits (252), Expect = 7.900e-19 Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1
BLAST of Spo21295.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QI64_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181620 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 5.500e-43 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1
BLAST of Spo21295.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D3D9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g029260 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 7.400e-32 Identity = 79/100 (79.00%), Postives = 88/100 (88.00%), Query Frame = 1
BLAST of Spo21295.1 vs. UniProtKB/TrEMBL
Match: A5C2N1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00670 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 3.800e-20 Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 1
BLAST of Spo21295.1 vs. UniProtKB/TrEMBL
Match: A0A151TLK4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_021549 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 3.200e-19 Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = 1
BLAST of Spo21295.1 vs. UniProtKB/TrEMBL
Match: A0A0L9V8D5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g208500 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 7.200e-19 Identity = 62/104 (59.62%), Postives = 78/104 (75.00%), Query Frame = 1
BLAST of Spo21295.1 vs. ExPASy Swiss-Prot
Match: PST2_PETHY (Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida PE=1 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 5.100e-18 Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 1
BLAST of Spo21295.1 vs. ExPASy Swiss-Prot
Match: PST2_GOSHI (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 7.400e-17 Identity = 60/104 (57.69%), Postives = 70/104 (67.31%), Query Frame = 1
BLAST of Spo21295.1 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=3 SV=2) HSP 1 Score: 72.8 bits (177), Expect = 2.500e-12 Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1
BLAST of Spo21295.1 vs. TAIR (Arabidopsis)
Match: AT3G21055.1 (photosystem II subunit T) HSP 1 Score: 72.8 bits (177), Expect = 1.400e-13 Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1
BLAST of Spo21295.1 vs. TAIR (Arabidopsis)
Match: AT1G51400.1 (Photosystem II 5 kD protein) HSP 1 Score: 70.1 bits (170), Expect = 9.000e-13 Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21295.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21295.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21295.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo21295.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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