Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCAGTGAGTGCACTCCGCGAGAGAGAAAGAGAGAGATGGCAAGAATCAATTCAATTTGCGTTGCTTTGCTATGGAGTCTTGTTCTTTTCGGAACCTTAACTCAAATTCAGGTATGTTTTATATACATTTTCAAAAAATTATTGATTGATATATGTAGATTTCCCCTTTAATTTAATTGAGATCGGAATTTAGGGTTAACGCATTTGAATTTCTAGATCATCATGAATCTATGAAAAATTGAGAAAACAAATTAATTTTCTTTGGGAAAATTGATATAGGCTAAGAAGAAATCATCCGAAGATCTGAAGGAAGTGACCAACAAAGTGTTCTTTGATGTTGAGATTGATGGGAAACCAGCTGGTAACTTTTTCTCATCTCATTGAGATTAAATTCCTAATAATTTTTTATTTTCCTTCTGTTTGTAAAATGTTCGCGAATTTTCAATTTTCTGTTTGTATCGGTTCATGATTTTTAGATGGGGTTAGTGTTGCAAAATAAAATTCAAAGAAGAACAAAAAAATTAATTTTTTTTATCTGTGACTGTGATCAAGTGATTTATGTTGATTTAGTGGTAGATTTTCCACCTTTTTATGGTAATAATTTTGATATAACTTTTAAAGTTGTTCTTTTCATGAATTTGAATTATTGTTTTTAATTGTGTTGCTGCTGATTTGTTTTCAGGCCGAATTGTTATGGGTCTCTTTGGCAAGGCGGTTCCCAAAACAGCTGGTAAATTGTTGAATGTTTGGTTCATCCAGCTTAATATTTGGTTCATGATCTCAAAATGTTACTGACTTCTGCATTGTTTTCTGTTTTGTGTAGAAAACTTCAGAGCATTGTGCACTGGTAAGTTTGTGAAGTTCAATCTTTGATTTATTTCCGGTGTTCTTTTCGTAATAGTGTGATTTATCATCATGCTATGAATATTGAGCTTTAATTCCAAACAAAGCATGATAATTGTAGAACAGAAGGGAATAAAGGGAGTATCTTTGTTGAGTATATGAACAAATGGTAGGAGATGAAACAGGAACTATGTTGAGGGTGTATTAAATTTCTAATTTGAAGTGGTAGAATATGCTATTTGCTGCTGTAATAAATGTGGGTTGATAATGGCTCGAGGAGTAGTTTGGCTTTGTTCAATGTTCATGACACGCCTAGATGGTAATGTTTCTGTATGCAATTTCAGGAGAGAAAGGTGTTGGGAAATCCGGGAAACCCCTCCATTACAAGGGAAGCAAATTCCACAGGATTATTCCAAGTTTCATGATCCAGGGAGGTGATTTCACTCTTGGGGATGGAAGAGGTGGTGAATCAATCTATGGAGAGAAATTTGCTGATGAAAACTTCAAGCTAAAGCATACCGGACCAGGTATATTACTGTAACTTATCGGAAATCTTCTTGTACTATTTCTAATTTGAGATTTCGTAAAAAAATTCTGCATCAATGAGATATCTCCCATATTTTCCAAATAATATGTCCCCCCGTGTGCATCATCTGATCAAAAGTGTTGGGCTGATCTTTATCCATGATGTATCTGCAGGGCTTCTGTCTATGGCAAATGCTGGTAAAAACACCAATGGTTCCCAGTTCTTCATCACAACCGTAACAACCAGCTGGTGAGTACCTTGCTTTTAGAAGGAAAAAAAGTTCTCTGTTGCCTTTACTTTTGATTTGGGGATGTAGAGAGTGCTTCGGTGAATAATATTGATGGATACGAAGGAAAAGAAATCAGGTATTGGGGGCACTTGTTAATAGGATTAGGACAGGAGTAAGTTGGGAATTGATTGTCAAACTTTGGGTTTTGTGCTCACTGGAGAAATCCCTCAAGAGACAGACATACTAGTTATGTTATGACTAATGCTTTAATTCCCTACAGATGCCCCTGGTTCAATACTTTAATTTTAACCTTCAAATGGTTCCTCGTCTTTGATCTTGGCAAGTAATCCTCCCACTTCCCCACTTTAAATCAAGTAAAAGAAATGCTGATGCCAATGCATGCCATTTCTCTTAGGCTGGTTACATAACTGAATTTTATTTCCAGTAGAAATCAAGTTTAAAACTTCATTACCATAGTTTGGTTTGATAGAAGGAAATAAATGGCAGGAGAAGTGGAAGGACCTTGAGATACTATTTCTAACATCAGAATATTATTCATCCTTTACTAATCAGAGGAATGGTAAAACCAGTTTTTCCTGTGGAAGGAATATCTTTGCAACCAATCAGTGCAACTAAGCTGTCCTTGTTCTTGTCAAGATTTGTATTTAACCTAATGAAATGAAAACCTTGTTCTAATTGGTGTTGACTAGCTTAACCTAATGAAAACCTTGTTCTTATTGGTGTTGATTAGCTTAATCTAGTGAATATCTTGTTCTTATTGGTGTTGACTATTGAGACAGCTTTGATTATTTTCTCATACAGCTAATGAAGCTCCAATCTTTATTCTGTATAGGAGTAGCAAACATGTGTGGGTGGACTAACTATTTGTATTAATTCGCAGGTTGGATGGCAAACATGTCGTATTTGGCAAGGTACTTTCTGGAATGGATGTTGTCTACAAGATGGAAGCTGAAGGAAAGCAGGATGGTACTCCTAAAAGCAAGGTTACCATCGCTGATAGTGGAGAAATTCCTCTATAATCTCTCATCAACCTCTCCTAATTCTTTCCTTTCCTTAAAAACAGATGAATTGGGGAAAAGACCATAGTCCAACACTAGTCGGATGCAATGAATTTGCACTTTAGTTTTAATATTAGGTGTTGTTGGACCCTTTATTGGTTGGAATCGCCTGTTTTTCATCTCCGTGTAAACCCTATATCATATACGATGAGCTGTTTTATAGATGAGTTAGATTTTGCTGCTACGCTCTATTGAGATTTTGCTGCTTTGGCTAAATTTAATACAGAGTATTATCATGGGCGAAATTTCCGAATGAGAAGCTGTGAAGATGAAAGTTATCAATTTTCCATACAAGTCACAACAAAGAACAACACACCATAGAACAAAGATAACTCACTCTCTCACCACCACAAATTAAACAAGATCAATATCGATCTGCTACATGAACCAAGAATTTATCCCCATGATAACCAAAAATCATACAACCACCACAAACTAGAAATAAACACAACTTTACTAATTGTGTATAATATCACAATCGGAAGAGATTAATCAGATATAAACTATATGATCACTGTAAAATCTTCATTTTGTTCATGATCTCATTATCTGTAGCAGTATCTAGTTATTTACCCCCTCCTTCCAGCCATTATCGCAATTCTTCCACATAAATTTGCGTTGGCAAACCAAATTAGTGAAATCAATAGAAAGATCAGAGTACATGGACAAAATCTTGGAAATATTTCCATTGATTTCGCAAATTAGGTCACCATTCTTCGCCAAGTTGTCTAGATTTTTCGACTGATGATTTTCATTCACTCGTTGAATCAAAGCAGAGTTTTCATCCAACACCGATTGAACTCGCTCCAGTCTGCTGCTCAGCATCTTCCACAACTCTCCATCAAACTCCTCGCCTTCTCCGTCGTCTTCATCACCGAGATATTCCGTTTCCCGACGAAGATCGTGGCTGTTCGTTTTCCGATGGAGAATATGATCGTTACCGG GCAGTGAGTGCACTCCGCGAGAGAGAAAGAGAGAGATGGCAAGAATCAATTCAATTTGCGTTGCTTTGCTATGGAGTCTTGTTCTTTTCGGAACCTTAACTCAAATTCAGGCTAAGAAGAAATCATCCGAAGATCTGAAGGAAGTGACCAACAAAGTGTTCTTTGATGTTGAGATTGATGGGAAACCAGCTGGCCGAATTGTTATGGGTCTCTTTGGCAAGGCGGTTCCCAAAACAGCTGAAAACTTCAGAGCATTGTGCACTGGAGAGAAAGGTGTTGGGAAATCCGGGAAACCCCTCCATTACAAGGGAAGCAAATTCCACAGGATTATTCCAAGTTTCATGATCCAGGGAGGTGATTTCACTCTTGGGGATGGAAGAGGTGGTGAATCAATCTATGGAGAGAAATTTGCTGATGAAAACTTCAAGCTAAAGCATACCGGACCAGGGCTTCTGTCTATGGCAAATGCTGGTAAAAACACCAATGGTTCCCAGTTCTTCATCACAACCGTAACAACCAGCTGGTTGGATGGCAAACATGTCGTATTTGGCAAGGTACTTTCTGGAATGGATGTTGTCTACAAGATGGAAGCTGAAGGAAAGCAGGATGGTACTCCTAAAAGCAAGGTTACCATCGCTGATAGTGGAGAAATTCCTCTATAATCTCTCATCAACCTCTCCTAATTCTTTCCTTTCCTTAAAAACAGATGAATTGGGGAAAAGACCATAGTCCAACACTAGTCGGATGCAATGAATTTGCACTTTAGTTTTAATATTAGGTGTTGTTGGACCCTTTATTGGTTGGAATCGCCTGTTTTTCATCTCCGTGTAAACCCTATATCATATACGATGAGCTGTTTTATAGATGAGTTAGATTTTGCTGCTACGCTCTATTGAGATTTTGCTGCTTTGGCTAAATTTAATACAGAGTATTATCATGGGCGAAATTTCCGAATGAGAAGCTGTGAAGATGAAAGTTATCAATTTTCCATACAAGTCACAACAAAGAACAACACACCATAGAACAAAGATAACTCACTCTCTCACCACCACAAATTAAACAAGATCAATATCGATCTGCTACATGAACCAAGAATTTATCCCCATGATAACCAAAAATCATACAACCACCACAAACTAGAAATAAACACAACTTTACTAATTGTGTATAATATCACAATCGGAAGAGATTAATCAGATATAAACTATATGATCACTGTAAAATCTTCATTTTGTTCATGATCTCATTATCTGTAGCAGTATCTAGTTATTTACCCCCTCCTTCCAGCCATTATCGCAATTCTTCCACATAAATTTGCGTTGGCAAACCAAATTAGTGAAATCAATAGAAAGATCAGAGTACATGGACAAAATCTTGGAAATATTTCCATTGATTTCGCAAATTAGGTCACCATTCTTCGCCAAGTTGTCTAGATTTTTCGACTGATGATTTTCATTCACTCGTTGAATCAAAGCAGAGTTTTCATCCAACACCGATTGAACTCGCTCCAGTCTGCTGCTCAGCATCTTCCACAACTCTCCATCAAACTCCTCGCCTTCTCCGTCGTCTTCATCACCGAGATATTCCGTTTCCCGACGAAGATCGTGGCTGTTCGTTTTCCGATGGAGAATATGATCGTTACCGG ATGGCAAGAATCAATTCAATTTGCGTTGCTTTGCTATGGAGTCTTGTTCTTTTCGGAACCTTAACTCAAATTCAGGCTAAGAAGAAATCATCCGAAGATCTGAAGGAAGTGACCAACAAAGTGTTCTTTGATGTTGAGATTGATGGGAAACCAGCTGGCCGAATTGTTATGGGTCTCTTTGGCAAGGCGGTTCCCAAAACAGCTGAAAACTTCAGAGCATTGTGCACTGGAGAGAAAGGTGTTGGGAAATCCGGGAAACCCCTCCATTACAAGGGAAGCAAATTCCACAGGATTATTCCAAGTTTCATGATCCAGGGAGGTGATTTCACTCTTGGGGATGGAAGAGGTGGTGAATCAATCTATGGAGAGAAATTTGCTGATGAAAACTTCAAGCTAAAGCATACCGGACCAGGGCTTCTGTCTATGGCAAATGCTGGTAAAAACACCAATGGTTCCCAGTTCTTCATCACAACCGTAACAACCAGCTGGTTGGATGGCAAACATGTCGTATTTGGCAAGGTACTTTCTGGAATGGATGTTGTCTACAAGATGGAAGCTGAAGGAAAGCAGGATGGTACTCCTAAAAGCAAGGTTACCATCGCTGATAGTGGAGAAATTCCTCTATAA MARINSICVALLWSLVLFGTLTQIQAKKKSSEDLKEVTNKVFFDVEIDGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFADENFKLKHTGPGLLSMANAGKNTNGSQFFITTVTTSWLDGKHVVFGKVLSGMDVVYKMEAEGKQDGTPKSKVTIADSGEIPL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21040.1 vs. NCBI nr
Match: gi|902211124|gb|KNA16615.1| (hypothetical protein SOVF_087400 [Spinacia oleracea]) HSP 1 Score: 421.0 bits (1081), Expect = 1.200e-114 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1
BLAST of Spo21040.1 vs. NCBI nr
Match: gi|731348573|ref|XP_010685556.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 387.1 bits (993), Expect = 1.900e-104 Identity = 188/208 (90.38%), Postives = 199/208 (95.67%), Query Frame = 1
BLAST of Spo21040.1 vs. NCBI nr
Match: gi|870853178|gb|KMT05059.1| (hypothetical protein BVRB_7g172160 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 381.7 bits (979), Expect = 8.100e-103 Identity = 185/205 (90.24%), Postives = 196/205 (95.61%), Query Frame = 1
BLAST of Spo21040.1 vs. NCBI nr
Match: gi|743865206|ref|XP_011032116.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]) HSP 1 Score: 370.5 bits (950), Expect = 1.900e-99 Identity = 179/208 (86.06%), Postives = 194/208 (93.27%), Query Frame = 1
BLAST of Spo21040.1 vs. NCBI nr
Match: gi|224104269|ref|XP_002313378.1| (peptidyl-prolyl cis-trans isomerase family protein [Populus trichocarpa]) HSP 1 Score: 369.8 bits (948), Expect = 3.200e-99 Identity = 178/208 (85.58%), Postives = 194/208 (93.27%), Query Frame = 1
BLAST of Spo21040.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAV5_SPIOL (Peptidyl-prolyl cis-trans isomerase OS=Spinacia oleracea GN=SOVF_087400 PE=3 SV=1) HSP 1 Score: 421.0 bits (1081), Expect = 8.400e-115 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1
BLAST of Spo21040.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BYJ5_BETVU (Peptidyl-prolyl cis-trans isomerase OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g172160 PE=3 SV=1) HSP 1 Score: 381.7 bits (979), Expect = 5.600e-103 Identity = 185/205 (90.24%), Postives = 196/205 (95.61%), Query Frame = 1
BLAST of Spo21040.1 vs. UniProtKB/TrEMBL
Match: A9PAQ9_POPTR (Peptidyl-prolyl cis-trans isomerase OS=Populus trichocarpa GN=POPTR_0009s05120g PE=2 SV=1) HSP 1 Score: 369.8 bits (948), Expect = 2.200e-99 Identity = 178/208 (85.58%), Postives = 194/208 (93.27%), Query Frame = 1
BLAST of Spo21040.1 vs. UniProtKB/TrEMBL
Match: A0A166EGP4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007378 PE=4 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 6.400e-99 Identity = 181/208 (87.02%), Postives = 191/208 (91.83%), Query Frame = 1
BLAST of Spo21040.1 vs. UniProtKB/TrEMBL
Match: A9P8C5_POPTR (Peptidyl-prolyl cis-trans isomerase OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 364.8 bits (935), Expect = 7.100e-98 Identity = 176/208 (84.62%), Postives = 191/208 (91.83%), Query Frame = 1
BLAST of Spo21040.1 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 2.000e-93 Identity = 165/198 (83.33%), Postives = 182/198 (91.92%), Query Frame = 1
BLAST of Spo21040.1 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2) HSP 1 Score: 342.8 bits (878), Expect = 2.600e-93 Identity = 167/198 (84.34%), Postives = 183/198 (92.42%), Query Frame = 1
BLAST of Spo21040.1 vs. ExPASy Swiss-Prot
Match: CP21B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP21-2 OS=Arabidopsis thaliana GN=CYP21-2 PE=2 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 3.700e-79 Identity = 146/220 (66.36%), Postives = 171/220 (77.73%), Query Frame = 1
BLAST of Spo21040.1 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1) HSP 1 Score: 278.9 bits (712), Expect = 4.600e-74 Identity = 133/192 (69.27%), Postives = 154/192 (80.21%), Query Frame = 1
BLAST of Spo21040.1 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2) HSP 1 Score: 271.6 bits (693), Expect = 7.400e-72 Identity = 126/167 (75.45%), Postives = 142/167 (85.03%), Query Frame = 1
BLAST of Spo21040.1 vs. TAIR (Arabidopsis)
Match: AT5G58710.1 (rotamase CYP 7) HSP 1 Score: 343.2 bits (879), Expect = 1.100e-94 Identity = 165/198 (83.33%), Postives = 182/198 (91.92%), Query Frame = 1
BLAST of Spo21040.1 vs. TAIR (Arabidopsis)
Match: AT2G29960.1 (cyclophilin 5) HSP 1 Score: 342.8 bits (878), Expect = 1.500e-94 Identity = 167/198 (84.34%), Postives = 183/198 (92.42%), Query Frame = 1
BLAST of Spo21040.1 vs. TAIR (Arabidopsis)
Match: AT3G55920.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein) HSP 1 Score: 295.8 bits (756), Expect = 2.100e-80 Identity = 146/220 (66.36%), Postives = 171/220 (77.73%), Query Frame = 1
BLAST of Spo21040.1 vs. TAIR (Arabidopsis)
Match: AT4G38740.1 (rotamase CYP 1) HSP 1 Score: 254.2 bits (648), Expect = 6.900e-68 Identity = 117/167 (70.06%), Postives = 136/167 (81.44%), Query Frame = 1
BLAST of Spo21040.1 vs. TAIR (Arabidopsis)
Match: AT2G21130.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein) HSP 1 Score: 253.8 bits (647), Expect = 9.000e-68 Identity = 120/167 (71.86%), Postives = 134/167 (80.24%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21040.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21040.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21040.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21040.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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