Spo20907 (gene)

Overview
NameSpo20907
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 17327502 .. 17329335 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCGGATGAAAATTAATTATTTATATTACGTGGCAATATCTGAGTGGTATTATGGTTAGGAAAGTTGGATCTCATGTTCCTTTTTATTTTCTGTTTATAAATAATTGCAGCAGTTGAATTTCTTTAATTCCTGTAAACTTTTTGATTGTTTATGGTGCAAAATAAAATAAATTCAGACACCCATAAAGCAAGGTCCTTTGTTGCAAAGCGCCAAATTTATGCGCCTCAAATCTCTCTCTCTACCCTTTCTTTCCTCTCTTGATCGAGAATCTAAGCCTAAACCCAAACCAAGCCGGAAATCAAAGGATCTTTTGCTCAACTTCACCTTGCAGAAAAAGGAAGAGTGTAATATTTCTACAGGTAGTTTTTTGAACCCCAGATTTGTTGTATTTTTCTGGAAGTTTTAAGCTGAATGTTGCATTGTTCTGGGGTTTTTTATTCAATTTAGAAATTACCCATTTCGGAATTTTTATGTTTTTGTGATGTTGTTTAGCAGATTAAACGAATCGCATTGTCAATTTTGTTAATTTGGGGGTAACTATTTGTATCAAATCGGGGTTTTCTGATTCATGGATTGTATCTTATTTCAGATGTAAGATGCCTCGTAATTTGTGGTAATTGCTTGATTTTTTTCACCGGGCACAATTTTACTTTTCTGGGTTAATTTGTGTTGATGCAGTTATTTTTTTTCTTTCTAAATTTGGGGTTTGGTTTGGGATGGTTGAAACTTGAAAGTTGATTAAATCAATAAGATTGGGAGTTCAATTTGCAAGATTAGGGTCTTGTTATTGCTAAATTGATCATTATTTCTGTTCTAATAGTTGATTTGGTCAGTCATGAAAGTGGTTGGAAGAATTTCTGAAAGTACCTTTTTTGGGTGTAATACAATATAGTGTAATTTAGCTTAAACAATTGGATAACGAAGTTTGGGATTGAGGGGGCAGGTGATCGTTTTGAAACAAAAGTAGTTGTGATATGAAGATACATGTGTTGATGGTGACTATAATTAGTTCTTTCGGTTGGATTATCGTTGTCGCAGCTTCCTTTTTAGTCTAATAATTGCATTTGTTAAGTAAGCTTACTATAGGAATTGGCAATAATATAAGAGTAATTATTTGTATGAAAGCTGCTTCTTTGAGTATTTGCTTAGGAATAGAAGTTGTTGTTTCTCTTGTCTTTTAGTTATAGTTTAGATTAGATGATGATAACCAAATGATTATTAAACGCGAGATATAATGAAAGGAGGAGATAAGTTTCTAAATTTGTTGAGTTGGATATTGTGGGATTTTCTTTAGAATGAGTTAGGTAGTAATTTGTCCTGGCTAGAGGTAAGGCTGTATACATCTCGACTCCTTTAGACTTCACATATGATATTACCATCTATGACGGGTTCTATTTTGGGTTTTACTGTTGCTATATATAAGTTCGAGTACAGTTACTTGACTAGTATACTATATAGTGAAATGACAATAGCTTGGTTTATGTATAGGAAATTTAATATCATCCTTGCAAGCAAATAGATGCAGCAAAGTGCACCAAAACAAACTCTAATTAATCTTATAATGATTTCTCGTATTTATCATGTTTTCGGCTCTCTGTATATGGAAATACGGAATATGCTCATTCAGAGGATACATACATGAAATAAGACATGCATACTATGAATTGGAAACCCTGTGATCTAAATGATCTCATATTTATCAGCTAATTTTATGTTCTGTTTTCTCAGCTCAATGTACTGTGTAAATTACATATCTAATTCTTTGGTTACCTTTTCTGTAGTTTGAAGAGACGGTGTGTAGAAAAACTTACCCAATTGTTATGCACTAA

mRNA sequence

ATGAGGCGGATGAAAATTAATTATTTATATTACGTGGCAATATCTGAGTGCAAGGTCCTTTGTTGCAAAGCGCCAAATTTATGCGCCTCAAATCTCTCTCTCTACCCTTTCTTTCCTCTCTTGATCGAGAATCTAAGCCTAAACCCAAACCAAGCCGGAAATCAAAGGATCTTTTGCTCAACTTCACCTTGCAGAAAAAGGAAGAGTGTAATATTTCTACAGTTTGAAGAGACGGTGTGTAGAAAAACTTACCCAATTGTTATGCACTAA

Coding sequence (CDS)

ATGAGGCGGATGAAAATTAATTATTTATATTACGTGGCAATATCTGAGTGCAAGGTCCTTTGTTGCAAAGCGCCAAATTTATGCGCCTCAAATCTCTCTCTCTACCCTTTCTTTCCTCTCTTGATCGAGAATCTAAGCCTAAACCCAAACCAAGCCGGAAATCAAAGGATCTTTTGCTCAACTTCACCTTGCAGAAAAAGGAAGAGTGTAATATTTCTACAGTTTGAAGAGACGGTGTGTAGAAAAACTTACCCAATTGTTATGCACTAA

Protein sequence

MRRMKINYLYYVAISECKVLCCKAPNLCASNLSLYPFFPLLIENLSLNPNQAGNQRIFCSTSPCRKRKSVIFLQFEETVCRKTYPIVMH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20907.1Spo20907.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo20907.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20907.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20907.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20907.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0048831 regulation of shoot system development
biological_process GO:0015979 photosynthesis
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process
biological_process GO:0006221 pyrimidine nucleotide biosynthetic process
biological_process GO:0046939 nucleotide phosphorylation
biological_process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process
biological_process GO:0055085 transmembrane transport
biological_process GO:0000041 transition metal ion transport
biological_process GO:0006950 response to stress
biological_process GO:0010029 regulation of seed germination
biological_process GO:0009805 coumarin biosynthetic process
biological_process GO:0080036 regulation of cytokinin-activated signaling pathway
biological_process GO:0031537 regulation of anthocyanin metabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0015698 inorganic anion transport
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0016049 cell growth
biological_process GO:0051301 cell division
biological_process GO:0046786 viral replication complex formation and maintenance
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0042398 cellular modified amino acid biosynthetic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0006396 RNA processing
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0009725 response to hormone
biological_process GO:0001101 response to acid chemical
biological_process GO:0006468 protein phosphorylation
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0031640 killing of cells of other organism
biological_process GO:0050832 defense response to fungus
biological_process GO:0042742 defense response to bacterium
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009809 lignin biosynthetic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008152 metabolic process
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0006457 protein folding
biological_process GO:0010286 heat acclimation
biological_process GO:0009811 stilbene biosynthetic process
biological_process GO:0009611 response to wounding
biological_process GO:0009963 positive regulation of flavonoid biosynthetic process
biological_process GO:0006598 polyamine catabolic process
biological_process GO:0032259 methylation
biological_process GO:0006364 rRNA processing
biological_process GO:0009553 embryo sac development
biological_process GO:0006417 regulation of translation
biological_process GO:0009744 response to sucrose
biological_process GO:0006508 proteolysis
biological_process GO:0006554 lysine catabolic process
biological_process GO:0046251 limonene catabolic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0018874 benzoate metabolic process
biological_process GO:0010043 response to zinc ion
biological_process GO:0033591 response to L-ascorbic acid
biological_process GO:0006574 valine catabolic process
biological_process GO:0046680 response to DDT
biological_process GO:0046686 response to cadmium ion
biological_process GO:0009646 response to absence of light
biological_process GO:0006013 mannose metabolic process
biological_process GO:0019853 L-ascorbic acid biosynthetic process
biological_process GO:0009298 GDP-mannose biosynthetic process
biological_process GO:0006000 fructose metabolic process
biological_process GO:0042908 xenobiotic transport
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006568 tryptophan metabolic process
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:1901918 negative regulation of exoribonuclease activity
biological_process GO:0030154 cell differentiation
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0010207 photosystem II assembly
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0042793 plastid transcription
cellular_component GO:0005576 extracellular region
cellular_component GO:0005618 cell wall
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009705 plant-type vacuole membrane
cellular_component GO:0016020 membrane
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005829 cytosol
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0048046 apoplast
molecular_function GO:0042409 caffeoyl-CoA O-methyltransferase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0043424 protein histidine kinase binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004300 enoyl-CoA hydratase activity
molecular_function GO:0016853 isomerase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0004127 cytidylate kinase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0051996 squalene synthase activity
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0004310 farnesyl-diphosphate farnesyltransferase activity
molecular_function GO:0009041 uridylate kinase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0050200 plasmalogen synthase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0008375 acetylglucosaminyltransferase activity
molecular_function GO:0003779 actin binding
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0009927 histidine phosphotransfer kinase activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0004476 mannose-6-phosphate isomerase activity
molecular_function GO:0016887 ATPase activity
RNA-Seq Expression