Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGTACCAGAGGATTCAGAGGCTGGGGGTTGGTATATAGGGATCATCTCTTTCCTTCTTTTCATCTTCACAGTCTCAGGTGCCATCTTCTTAGTTCTGTACATGATCCAACCTACATCCATAACCCATTCTTGGTACCCTGTTATCGGTGGTGCTCTAGTTTGCTTCCCATGGTTCTTCTGGTTCCTCACATTGCTTTACCGGATTGTTTCACGTGCTTGTGGGTTTAGAATGTCTTGTTTTGGTACCTCTGGTGTTGATCACCCTGATGAAGTTATTCCTTCTGGTGTTAGTGCTGTTAATAATGCTAGTATAGGCACTAATAACGGTGTCGTTGATGGCGGGAATCCCGTTATTGGTGATTTGGAAAATCTGAACGGGAACGAGAATGGAAACGAGAATGAGAACGGAAACAGAGCGTCTGGGGTTAGATTACAGCCAGGAAGTCCAAGACGGGTTCATTTTGGAGGGGTAGTGGTATTAGGCGAGGATGACGATGGTGGTGGTGGTGCCGTTGGAAACCAAGAAAGCCCTAAGTCGTTGTCATCATCATCGTCATCATCATCATCTTCATCGAGCTGTGATGAGAGTGAAATGCCTCTGAAATTGTGTATGGCCTCTTGA ATGGCGGTACCAGAGGATTCAGAGGCTGGGGGTTGGTATATAGGGATCATCTCTTTCCTTCTTTTCATCTTCACAGTCTCAGGTGCCATCTTCTTAGTTCTGTACATGATCCAACCTACATCCATAACCCATTCTTGGTACCCTGTTATCGGTGGTGCTCTAGTTTGCTTCCCATGGTTCTTCTGGTTCCTCACATTGCTTTACCGGATTGTTTCACGTGCTTGTGGGTTTAGAATGTCTTGTTTTGGTACCTCTGGTGTTGATCACCCTGATGAAGTTATTCCTTCTGGTGTTAGTGCTGTTAATAATGCTAGTATAGGCACTAATAACGGTGTCGTTGATGGCGGGAATCCCGTTATTGGTGATTTGGAAAATCTGAACGGGAACGAGAATGGAAACGAGAATGAGAACGGAAACAGAGCGTCTGGGGTTAGATTACAGCCAGGAAGTCCAAGACGGGTTCATTTTGGAGGGGTAGTGGTATTAGGCGAGGATGACGATGGTGGTGGTGGTGCCGTTGGAAACCAAGAAAGCCCTAAGTCGTTGTCATCATCATCGTCATCATCATCATCTTCATCGAGCTGTGATGAGAGTGAAATGCCTCTGAAATTGTGTATGGCCTCTTGA ATGGCGGTACCAGAGGATTCAGAGGCTGGGGGTTGGTATATAGGGATCATCTCTTTCCTTCTTTTCATCTTCACAGTCTCAGGTGCCATCTTCTTAGTTCTGTACATGATCCAACCTACATCCATAACCCATTCTTGGTACCCTGTTATCGGTGGTGCTCTAGTTTGCTTCCCATGGTTCTTCTGGTTCCTCACATTGCTTTACCGGATTGTTTCACGTGCTTGTGGGTTTAGAATGTCTTGTTTTGGTACCTCTGGTGTTGATCACCCTGATGAAGTTATTCCTTCTGGTGTTAGTGCTGTTAATAATGCTAGTATAGGCACTAATAACGGTGTCGTTGATGGCGGGAATCCCGTTATTGGTGATTTGGAAAATCTGAACGGGAACGAGAATGGAAACGAGAATGAGAACGGAAACAGAGCGTCTGGGGTTAGATTACAGCCAGGAAGTCCAAGACGGGTTCATTTTGGAGGGGTAGTGGTATTAGGCGAGGATGACGATGGTGGTGGTGGTGCCGTTGGAAACCAAGAAAGCCCTAAGTCGTTGTCATCATCATCGTCATCATCATCATCTTCATCGAGCTGTGATGAGAGTGAAATGCCTCTGAAATTGTGTATGGCCTCTTGA MAVPEDSEAGGWYIGIISFLLFIFTVSGAIFLVLYMIQPTSITHSWYPVIGGALVCFPWFFWFLTLLYRIVSRACGFRMSCFGTSGVDHPDEVIPSGVSAVNNASIGTNNGVVDGGNPVIGDLENLNGNENGNENENGNRASGVRLQPGSPRRVHFGGVVVLGEDDDGGGGAVGNQESPKSLSSSSSSSSSSSSCDESEMPLKLCMAS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20897.1 vs. NCBI nr
Match: gi|902163124|gb|KNA06774.1| (hypothetical protein SOVF_177730 [Spinacia oleracea]) HSP 1 Score: 402.1 bits (1032), Expect = 5.800e-109 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1
BLAST of Spo20897.1 vs. NCBI nr
Match: gi|731327263|ref|XP_010674432.1| (PREDICTED: uncharacterized protein LOC104890588 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 238.4 bits (607), Expect = 1.100e-59 Identity = 141/221 (63.80%), Postives = 165/221 (74.66%), Query Frame = 1
BLAST of Spo20897.1 vs. NCBI nr
Match: gi|731387688|ref|XP_010649345.1| (PREDICTED: uncharacterized protein LOC104879176 [Vitis vinifera]) HSP 1 Score: 105.9 bits (263), Expect = 8.600e-20 Identity = 82/209 (39.23%), Postives = 106/209 (50.72%), Query Frame = 1
BLAST of Spo20897.1 vs. NCBI nr
Match: gi|731367013|ref|XP_010695382.1| (PREDICTED: uncharacterized protein LOC104908028 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 104.8 bits (260), Expect = 1.900e-19 Identity = 88/197 (44.67%), Postives = 112/197 (56.85%), Query Frame = 1
BLAST of Spo20897.1 vs. NCBI nr
Match: gi|902136657|gb|KNA04471.1| (hypothetical protein SOVF_199390 [Spinacia oleracea]) HSP 1 Score: 89.0 bits (219), Expect = 1.100e-14 Identity = 77/194 (39.69%), Postives = 98/194 (50.52%), Query Frame = 1
BLAST of Spo20897.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QHQ2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_177730 PE=4 SV=1) HSP 1 Score: 402.1 bits (1032), Expect = 4.000e-109 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1
BLAST of Spo20897.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CPY5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g078910 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 7.700e-60 Identity = 141/221 (63.80%), Postives = 165/221 (74.66%), Query Frame = 1
BLAST of Spo20897.1 vs. UniProtKB/TrEMBL
Match: F6I0C8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01660 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.000e-19 Identity = 81/207 (39.13%), Postives = 105/207 (50.72%), Query Frame = 1
BLAST of Spo20897.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BCM3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g124560 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.300e-19 Identity = 88/197 (44.67%), Postives = 112/197 (56.85%), Query Frame = 1
BLAST of Spo20897.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QD44_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_199390 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 7.500e-15 Identity = 77/194 (39.69%), Postives = 98/194 (50.52%), Query Frame = 1
BLAST of Spo20897.1 vs. TAIR (Arabidopsis)
Match: AT4G30770.1 (Putative membrane lipoprotein) HSP 1 Score: 48.1 bits (113), Expect = 7.500e-6 Identity = 69/208 (33.17%), Postives = 91/208 (43.75%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20897.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20897.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20897.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo20897.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|