Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCCTCTTCTCCTTTCTCTCTCTTTTTCAGCCAGGAAAAGCACTTGATTCTATCATTATTCTCACTGCACTTGTTATAATAAATGAAGCCGACTATCATACACTCCCCTTTGCCCATACATCATTACGGTTTCCATTATTTCACAACGTACAATCTGCTGCTGCTGCTGCTGTAGTGCTGTTGTTGTTCTCGCATCATTCTATTCTGATAAACTTATCAAGTTAGCCAGGATATCTGAATATCTTCCAGATTGCTACGGGATATTATAGGAAAGCTCAAGAAGATGGTTTCCATGCTTCTGCATTGTCTACCGGTTCTGTTGCTAGTATTTCTATCAGGTGATTCGATCATATGTTCTCATTACTTAGGCTGTTCATTTAAATAGTAACTCTACATGATATTTTCTGATAATTCCTTATCAGGAGAAGGAATAAAATCAGTAGATTAATTTCAGATAACAAAATTTCCCTAGTTTGATTTCATCTACAAGGTGAAGCCACTTTCTAAATAAGAAAAATAACTCTGTATGTTTCCCACCATGTAATTAATAGCTTCATTTTTCATGAACTAGTATGAACAACAGACTTATGCATACCCGTTCCATGGATATCTATGCTTCAAGATGATCTTTAATATGATTGTATGCAAGTCTGTAGCATTAACACCAAAAAAAGAAAGAAAGAAAACTTACAGTTTTATGAACATTTTCAGGGTCAAGTGCTGTAGTAACAAACAAGTTCCAAATATATGATACTTATCCAACAGAGATCACTCATGGCACCTACCCAACAACGATCATGCACGACACTTTTCCAACAGATATGCCACCTGACAATCCAACGGATGTTCCAACTTTTGATCCAACTCCCACCACCACCCCGACAACCAGTCCCACTACAAACCCCCCATATACGCCAACCACAAACCCGCCAACTATACCAACCACAACACCAACCACCCCAACTACCACACCAACAACAACGCCAACCACACCATCCACAAATCCTCCACCGTCATTGGGAGGAGGAGGTGGGGATGGAGGAGGAGGAGTAGGAGGTGGGGATGGAGGAGGAGTAGGAGGTGGGGATGGAGGAGCAGGAGGTGGAGGTGGAGGAGGGGCAGGTGGAGGTGGAGGAGCAGGAGCAGGAGGAGGGGCAGGTGGAGGTGGAGGAGGATCTTGGTGTGTAGCAAACCCAAGTGCCTCAGAAAAGGCTTTACAAGTTGGTTTGGACTATGCATGTGGATATGGAGGAGCTGACTGCTCTGCAATTCAACCAGGAGGAAGTTGTGCTGATCCGAATTCAGTAAAAGACCATGCTTCTTACGCTTACAATAGCTATTACCAGAAGAACCCAGCTCCTACCAGCTGTGATTTTGGAGGAACTGCCCAGCTTGTCAGCACAGATCCAAGTAAGTACATTTTTTAGACTCTATTCATCTGAGAATGTATCCATGATCTTTTTCTTTAATCATGGAGGAATACCAATAAATGGAATCCTGCCCTCTGATAATCTATGTTGTGAAAGAATAAACATAAACTCAAGAAGCGAATTGTAGCATTTTACCAAGTTACCAACCAAATCTTTTTCCTGTTGCAGGCACTGGAAATTGTCGCTATTCGTCATCAAAAGGATCAACAAGGTAAGCATTCAACTGTTGGTTTTTAGCTTTCATTTCTTATACAAAAGCAGATCGACTACTTATGTTACGTTCTGTTACAGCACAACACCACCAATTTCACCAACTCCTCCAGCTCCATCCATGGATACACCACCAACTACATTCAGTCCACCAAGTCCATCAATCGGAACTTTCCCAGGACCACCTCTCGGAGGAGCATCAGTTTATGGGCCAGAACCAACAGGAAGCCCAAATATGGCTTCTGCCATTTCTGAGAAATGGATTTTCTTCTTTAGCTCAACAACAGCCATATTTATGTACATTCTACTAGCAAATCATTAATGAACAAAGGTAGGAGGCAAACACTTTTTCCCACCAAGAAGCAGTACATGCCAGATGAAGTTGTTAGGAGGCACTCACTACTTGACATATGAACTTCAGATTTCAGGTCCTCCTTACTACCAGGAGGAGACTCCATTTATTACTCCTCACATAATACATAGTTCTTTGTTAGGCTGCGTTGTTGGCGCTATAGGCTTACAGCAATCTTTTAGTAATTTATACTTGTAGAAACAGTAATTTACAATTCAAAAATAATAATTAGGAGATTCTGTATTTTACAGCAAAGAATGATACAATTTCGTGCAGCTAAAAACTATGACTTACTCCTCAAAAATTACTTCGACATAATGCAACTCATGATGTTACAGCATGATAATATTTCAAAGTGAAT TTTCCTCTTCTCCTTTCTCTCTCTTTTTCAGCCAGGAAAAGCACTTGATTCTATCATTATTCTCACTGCACTTGTTATAATAAATGAAGCCGACTATCATACACTCCCCTTTGCCCATACATCATTACGGTTTCCATTATTTCACAACGTACAATCTGCTGCTGCTGCTGCTGTAGTGCTGTTGTTGTTCTCGCATCATTCTATTCTGATAAACTTATCAAGTTAGCCAGGATATCTGAATATCTTCCAGATTGCTACGGGATATTATAGGAAAGCTCAAGAAGATGGTTTCCATGCTTCTGCATTGTCTACCGGTTCTGTTGCTAGTATTTCTATCAGGGTCAAGTGCTGTAGTAACAAACAAGTTCCAAATATATGATACTTATCCAACAGAGATCACTCATGGCACCTACCCAACAACGATCATGCACGACACTTTTCCAACAGATATGCCACCTGACAATCCAACGGATGTTCCAACTTTTGATCCAACTCCCACCACCACCCCGACAACCAGTCCCACTACAAACCCCCCATATACGCCAACCACAAACCCGCCAACTATACCAACCACAACACCAACCACCCCAACTACCACACCAACAACAACGCCAACCACACCATCCACAAATCCTCCACCGTCATTGGGAGGAGGAGGTGGGGATGGAGGAGGAGGAGTAGGAGGTGGGGATGGAGGAGGAGTAGGAGGTGGGGATGGAGGAGCAGGAGGTGGAGGTGGAGGAGGGGCAGGTGGAGGTGGAGGAGCAGGAGCAGGAGGAGGGGCAGGTGGAGGTGGAGGAGGATCTTGGTGTGTAGCAAACCCAAGTGCCTCAGAAAAGGCTTTACAAGTTGGTTTGGACTATGCATGTGGATATGGAGGAGCTGACTGCTCTGCAATTCAACCAGGAGGAAGTTGTGCTGATCCGAATTCAGTAAAAGACCATGCTTCTTACGCTTACAATAGCTATTACCAGAAGAACCCAGCTCCTACCAGCTGTGATTTTGGAGGAACTGCCCAGCTTGTCAGCACAGATCCAAGCACTGGAAATTGTCGCTATTCGTCATCAAAAGGATCAACAAGCACAACACCACCAATTTCACCAACTCCTCCAGCTCCATCCATGGATACACCACCAACTACATTCAGTCCACCAAGTCCATCAATCGGAACTTTCCCAGGACCACCTCTCGGAGGAGCATCAGTTTATGGGCCAGAACCAACAGGAAGCCCAAATATGGCTTCTGCCATTTCTGAGAAATGGATTTTCTTCTTTAGCTCAACAACAGCCATATTTATGTACATTCTACTAGCAAATCATTAATGAACAAAGGTAGGAGGCAAACACTTTTTCCCACCAAGAAGCAGTACATGCCAGATGAAGTTGTTAGGAGGCACTCACTACTTGACATATGAACTTCAGATTTCAGGTCCTCCTTACTACCAGGAGGAGACTCCATTTATTACTCCTCACATAATACATAGTTCTTTGTTAGGCTGCGTTGTTGGCGCTATAGGCTTACAGCAATCTTTTAGTAATTTATACTTGTAGAAACAGTAATTTACAATTCAAAAATAATAATTAGGAGATTCTGTATTTTACAGCAAAGAATGATACAATTTCGTGCAGCTAAAAACTATGACTTACTCCTCAAAAATTACTTCGACATAATGCAACTCATGATGTTACAGCATGATAATATTTCAAAGTGAAT ATGGTTTCCATGCTTCTGCATTGTCTACCGGTTCTGTTGCTAGTATTTCTATCAGGGTCAAGTGCTGTAGTAACAAACAAGTTCCAAATATATGATACTTATCCAACAGAGATCACTCATGGCACCTACCCAACAACGATCATGCACGACACTTTTCCAACAGATATGCCACCTGACAATCCAACGGATGTTCCAACTTTTGATCCAACTCCCACCACCACCCCGACAACCAGTCCCACTACAAACCCCCCATATACGCCAACCACAAACCCGCCAACTATACCAACCACAACACCAACCACCCCAACTACCACACCAACAACAACGCCAACCACACCATCCACAAATCCTCCACCGTCATTGGGAGGAGGAGGTGGGGATGGAGGAGGAGGAGTAGGAGGTGGGGATGGAGGAGGAGTAGGAGGTGGGGATGGAGGAGCAGGAGGTGGAGGTGGAGGAGGGGCAGGTGGAGGTGGAGGAGCAGGAGCAGGAGGAGGGGCAGGTGGAGGTGGAGGAGGATCTTGGTGTGTAGCAAACCCAAGTGCCTCAGAAAAGGCTTTACAAGTTGGTTTGGACTATGCATGTGGATATGGAGGAGCTGACTGCTCTGCAATTCAACCAGGAGGAAGTTGTGCTGATCCGAATTCAGTAAAAGACCATGCTTCTTACGCTTACAATAGCTATTACCAGAAGAACCCAGCTCCTACCAGCTGTGATTTTGGAGGAACTGCCCAGCTTGTCAGCACAGATCCAAGCACTGGAAATTGTCGCTATTCGTCATCAAAAGGATCAACAAGCACAACACCACCAATTTCACCAACTCCTCCAGCTCCATCCATGGATACACCACCAACTACATTCAGTCCACCAAGTCCATCAATCGGAACTTTCCCAGGACCACCTCTCGGAGGAGCATCAGTTTATGGGCCAGAACCAACAGGAAGCCCAAATATGGCTTCTGCCATTTCTGAGAAATGGATTTTCTTCTTTAGCTCAACAACAGCCATATTTATGTACATTCTACTAGCAAATCATTAA MVSMLLHCLPVLLLVFLSGSSAVVTNKFQIYDTYPTEITHGTYPTTIMHDTFPTDMPPDNPTDVPTFDPTPTTTPTTSPTTNPPYTPTTNPPTIPTTTPTTPTTTPTTTPTTPSTNPPPSLGGGGGDGGGGVGGGDGGGVGGGDGGAGGGGGGGAGGGGGAGAGGGAGGGGGGSWCVANPSASEKALQVGLDYACGYGGADCSAIQPGGSCADPNSVKDHASYAYNSYYQKNPAPTSCDFGGTAQLVSTDPSTGNCRYSSSKGSTSTTPPISPTPPAPSMDTPPTTFSPPSPSIGTFPGPPLGGASVYGPEPTGSPNMASAISEKWIFFFSSTTAIFMYILLANH Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20845.1 vs. NCBI nr
Match: gi|902229645|gb|KNA21562.1| (hypothetical protein SOVF_042140 [Spinacia oleracea]) HSP 1 Score: 586.3 bits (1510), Expect = 3.600e-164 Identity = 343/345 (99.42%), Postives = 343/345 (99.42%), Query Frame = 1
BLAST of Spo20845.1 vs. NCBI nr
Match: gi|731373628|ref|XP_010666701.1| (PREDICTED: aspartate, glycine, lysine and serine-rich protein [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 328.6 bits (841), Expect = 1.300e-86 Identity = 249/394 (63.20%), Postives = 269/394 (68.27%), Query Frame = 1
BLAST of Spo20845.1 vs. NCBI nr
Match: gi|595889745|ref|XP_007213466.1| (hypothetical protein PRUPE_ppa024163mg, partial [Prunus persica]) HSP 1 Score: 190.7 bits (483), Expect = 4.400e-45 Identity = 102/175 (58.29%), Postives = 132/175 (75.43%), Query Frame = 1
BLAST of Spo20845.1 vs. NCBI nr
Match: gi|645237781|ref|XP_008225368.1| (PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 2 [Prunus mume]) HSP 1 Score: 189.5 bits (480), Expect = 9.800e-45 Identity = 101/175 (57.71%), Postives = 131/175 (74.86%), Query Frame = 1
BLAST of Spo20845.1 vs. NCBI nr
Match: gi|694325810|ref|XP_009353837.1| (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 2-like [Pyrus x bretschneideri]) HSP 1 Score: 188.7 bits (478), Expect = 1.700e-44 Identity = 103/172 (59.88%), Postives = 127/172 (73.84%), Query Frame = 1
BLAST of Spo20845.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRW9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_042140 PE=4 SV=1) HSP 1 Score: 586.3 bits (1510), Expect = 2.500e-164 Identity = 343/345 (99.42%), Postives = 343/345 (99.42%), Query Frame = 1
BLAST of Spo20845.1 vs. UniProtKB/TrEMBL
Match: M5X6F9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024163mg PE=4 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 3.100e-45 Identity = 102/175 (58.29%), Postives = 132/175 (75.43%), Query Frame = 1
BLAST of Spo20845.1 vs. UniProtKB/TrEMBL
Match: A0A067JEP3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21674 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.500e-44 Identity = 104/175 (59.43%), Postives = 127/175 (72.57%), Query Frame = 1
BLAST of Spo20845.1 vs. UniProtKB/TrEMBL
Match: U5GX67_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s34420g PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 4.400e-44 Identity = 101/175 (57.71%), Postives = 131/175 (74.86%), Query Frame = 1
BLAST of Spo20845.1 vs. UniProtKB/TrEMBL
Match: A0A0A0M054_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G459490 PE=4 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 6.400e-43 Identity = 107/193 (55.44%), Postives = 132/193 (68.39%), Query Frame = 1
BLAST of Spo20845.1 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3) HSP 1 Score: 97.8 bits (242), Expect = 2.400e-19 Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1
BLAST of Spo20845.1 vs. ExPASy Swiss-Prot
Match: PDCB5_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana GN=PDCB5 PE=1 SV=2) HSP 1 Score: 94.0 bits (232), Expect = 3.500e-18 Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1
BLAST of Spo20845.1 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.700e-17 Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = 1
BLAST of Spo20845.1 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 8.600e-17 Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 1
BLAST of Spo20845.1 vs. ExPASy Swiss-Prot
Match: ALL10_OLEEU (Major pollen allergen Ole e 10 OS=Olea europaea PE=1 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 1.600e-15 Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 1
BLAST of Spo20845.1 vs. TAIR (Arabidopsis)
Match: AT1G29380.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 136.0 bits (341), Expect = 4.500e-32 Identity = 148/295 (50.17%), Postives = 184/295 (62.37%), Query Frame = 1
BLAST of Spo20845.1 vs. TAIR (Arabidopsis)
Match: AT1G09460.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 125.9 bits (315), Expect = 4.700e-29 Identity = 81/169 (47.93%), Postives = 105/169 (62.13%), Query Frame = 1
BLAST of Spo20845.1 vs. TAIR (Arabidopsis)
Match: AT2G30933.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 113.6 bits (283), Expect = 2.400e-25 Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1
BLAST of Spo20845.1 vs. TAIR (Arabidopsis)
Match: AT5G55180.2 (O-Glycosyl hydrolases family 17 protein) HSP 1 Score: 98.6 bits (244), Expect = 8.000e-21 Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1
BLAST of Spo20845.1 vs. TAIR (Arabidopsis)
Match: AT5G67460.1 (O-Glycosyl hydrolases family 17 protein) HSP 1 Score: 98.2 bits (243), Expect = 1.000e-20 Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20845.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20845.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20845.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo20845.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|