Spo20823 (gene)

Overview
NameSpo20823
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00828 : 17264 .. 18447 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCATACATCCCTTCGAAGCTGATCAGTCAACAGAACTGGATCGTGGTAGGCTCTGTATCACAGGCAAAGTTACCATAGGTACTTCAGTGGCAGCCCTGCTTGTTGTTTAGACAGCTATTTTACTAATCCTAAGATGATATTGGTTCATACGGGTATGACAGCCAAGGGTGCTTCAACGCTTCAAATGCAGAAGGACGCTTTCTCGGGTTTATTTCAAGTAAATGCGCAACAAAGTCTATGAAGCCTTGGTCTCCCATAGGTAGCCGGTGCCTTAGGGATGTCTTTTTAGGAATCAAGTATTCCAGCCTGCTTGTTTCCTGAAAAGGAACACATATCCATCCATATAAGCTAAAGAGAAAGAATTGAGCACAAGTAAAATCACAACCTCTACTTTGATTAACATTTTTTTTTGTTTTAGAAGGTAAGATGAATGACCCTACGGAACTAGTACCTCACATAGGTATTTCCAGCCAGCTTTGCAGGTCAGACTCATTGGAGAAAGTGAGGGGGGATATAAGGGGAATCCTTACCTCCAAAGAGCCCCTTTTGGGGTTTGATCCCATAACCTTAAGGTTAAGAGGTTAAGAGGTCAAGCCTTTGATTAATATATCCAGTAAAGATCAAACAATGTAATAGAAGCTTACAGCCAATCAGATCAAATATCGCAATCGATGGAAATTAATTTTAAACAAATTTGGAAAGGCTAAGAGATTGTTTACTTTGAGATTCTTTTTAAAAAAATAATCTTCCTATCTACCCCTCCCACCTTCCGACCCTTAAATATTGCCCAATTTCCATTTCTGGATGTCCCTTTGGATTTGCCCCAATTCCACAAGAAGGAATGGGGGACTATACTTCACAATTACAAACTTTATTTTTGGTCCCACCAATAAAGTGAACTTGGTGTTATGTTTAGGGGACGAAGGGAGTATGTTTAGGAATGGTCAATTTCTTCCATCATCAGGAAAGGATAATGATAAACAATCTTGGAAACTTTGATATCTTTTAAAAATAAGAAATATAATCTACAGCTAACCCAAAAAGTTCAAGATACTTTCAAAAACCTGCAGGTGTGTCTCAGTTTTGAGAAGTCTCCAACTTCTGAAAATGGAGTTCTGAAAATACAATCAGATTCCAGTGGCAACTACATCTTTGTTATTGTAGGGACAGATAAATAA

mRNA sequence

ATGGCATCATACATCCCTTCGAAGCTGATCAGTCAACAGAACTGGATCGTGCTAACCCAAAAAGTTCAAGATACTTTCAAAAACCTGCAGGTGTGTCTCAGTTTTGAGAAGTCTCCAACTTCTGAAAATGGAGTTCTGAAAATACAATCAGATTCCAGTGGCAACTACATCTTTGTTATTGTAGGGACAGATAAATAA

Coding sequence (CDS)

ATGGCATCATACATCCCTTCGAAGCTGATCAGTCAACAGAACTGGATCGTGCTAACCCAAAAAGTTCAAGATACTTTCAAAAACCTGCAGGTGTGTCTCAGTTTTGAGAAGTCTCCAACTTCTGAAAATGGAGTTCTGAAAATACAATCAGATTCCAGTGGCAACTACATCTTTGTTATTGTAGGGACAGATAAATAA

Protein sequence

MASYIPSKLISQQNWIVLTQKVQDTFKNLQVCLSFEKSPTSENGVLKIQSDSSGNYIFVIVGTDK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20823.1Spo20823.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo20823.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20823.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20823.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20823.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009863 salicylic acid mediated signaling pathway
biological_process GO:0016246 RNA interference
biological_process GO:0009611 response to wounding
biological_process GO:0008152 metabolic process
biological_process GO:0009744 response to sucrose
biological_process GO:0048571 long-day photoperiodism
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0042742 defense response to bacterium
biological_process GO:0048825 cotyledon development
biological_process GO:0006554 lysine catabolic process
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
cellular_component GO:0000932 P-body
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
RNA-Seq Expression