Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGGAAGACATGGTAGGAAATATGTGAAAGATGAAGAGTTTGAAGAAGAAGAAGTGTGGGGAGTTATGGAAGAAAATTCAAGCCCAAAACTCAGAAAATTACCCTTGAAATCTTCTTCTGCAACAAAACATTTTACTGCTGTTACTGGTGGTAATAATTCTGCTGCAAGAATGATACCAAGATCATCAACATCATCATCATCATTATTATCATCACCATCATCATGTGGAAAGCAGTCATCAGCACCAATGGATATTCCTGATTGGTCAAAAATCTATGGTAAGAAGAATAATGGTGCATCATCATGGGTTGATTATAATAATGCTGTTGTTACTACTCATGATGTGTATTATGGTCATGGGTGTCATGGTCATGTGAATCATGGTGATGGGAGTGATGAGGATGAGGATGGGGATAAGGATGATGATGATGATGATGATGATAACATGGTTCCACCACATGAGTACTTAGCAAAGAGGTTAGCAAGAAGTAAGATCTCATCTTTCTCTGTTTATGAAGGGATTGGAAGGACTCTCAAAGGGAGAGACCTTTGTAAAGTAAGAAATTCCATTTTGACTAAAACTGGTTTTCTAGAGTGA ATGGCAGGAAGACATGGTAGGAAATATGTGAAAGATGAAGAGTTTGAAGAAGAAGAAGTGTGGGGAGTTATGGAAGAAAATTCAAGCCCAAAACTCAGAAAATTACCCTTGAAATCTTCTTCTGCAACAAAACATTTTACTGCTGTTACTGGTGGTAATAATTCTGCTGCAAGAATGATACCAAGATCATCAACATCATCATCATCATTATTATCATCACCATCATCATGTGGAAAGCAGTCATCAGCACCAATGGATATTCCTGATTGGTCAAAAATCTATGGTAAGAAGAATAATGGTGCATCATCATGGGTTGATTATAATAATGCTGTTGTTACTACTCATGATGTGTATTATGGTCATGGGTGTCATGGTCATGTGAATCATGGTGATGGGAGTGATGAGGATGAGGATGGGGATAAGGATGATGATGATGATGATGATGATAACATGGTTCCACCACATGAGTACTTAGCAAAGAGGTTAGCAAGAAGTAAGATCTCATCTTTCTCTGTTTATGAAGGGATTGGAAGGACTCTCAAAGGGAGAGACCTTTGTAAAGTAAGAAATTCCATTTTGACTAAAACTGGTTTTCTAGAGTGA ATGGCAGGAAGACATGGTAGGAAATATGTGAAAGATGAAGAGTTTGAAGAAGAAGAAGTGTGGGGAGTTATGGAAGAAAATTCAAGCCCAAAACTCAGAAAATTACCCTTGAAATCTTCTTCTGCAACAAAACATTTTACTGCTGTTACTGGTGGTAATAATTCTGCTGCAAGAATGATACCAAGATCATCAACATCATCATCATCATTATTATCATCACCATCATCATGTGGAAAGCAGTCATCAGCACCAATGGATATTCCTGATTGGTCAAAAATCTATGGTAAGAAGAATAATGGTGCATCATCATGGGTTGATTATAATAATGCTGTTGTTACTACTCATGATGTGTATTATGGTCATGGGTGTCATGGTCATGTGAATCATGGTGATGGGAGTGATGAGGATGAGGATGGGGATAAGGATGATGATGATGATGATGATGATAACATGGTTCCACCACATGAGTACTTAGCAAAGAGGTTAGCAAGAAGTAAGATCTCATCTTTCTCTGTTTATGAAGGGATTGGAAGGACTCTCAAAGGGAGAGACCTTTGTAAAGTAAGAAATTCCATTTTGACTAAAACTGGTTTTCTAGAGTGA MAGRHGRKYVKDEEFEEEEVWGVMEENSSPKLRKLPLKSSSATKHFTAVTGGNNSAARMIPRSSTSSSSLLSSPSSCGKQSSAPMDIPDWSKIYGKKNNGASSWVDYNNAVVTTHDVYYGHGCHGHVNHGDGSDEDEDGDKDDDDDDDDNMVPPHEYLAKRLARSKISSFSVYEGIGRTLKGRDLCKVRNSILTKTGFLE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20562.1 vs. NCBI nr
Match: gi|902186669|gb|KNA10757.1| (hypothetical protein SOVF_141420 [Spinacia oleracea]) HSP 1 Score: 386.7 bits (992), Expect = 2.400e-104 Identity = 198/200 (99.00%), Postives = 198/200 (99.00%), Query Frame = 1
BLAST of Spo20562.1 vs. NCBI nr
Match: gi|731351060|ref|XP_010686835.1| (PREDICTED: probable serine/threonine-protein kinase DDB_G0272282 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 228.4 bits (581), Expect = 1.100e-56 Identity = 145/215 (67.44%), Postives = 168/215 (78.14%), Query Frame = 1
BLAST of Spo20562.1 vs. NCBI nr
Match: gi|870852225|gb|KMT04169.1| (hypothetical protein BVRB_8g186170 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 152.9 bits (385), Expect = 5.900e-34 Identity = 90/128 (70.31%), Postives = 102/128 (79.69%), Query Frame = 1
BLAST of Spo20562.1 vs. NCBI nr
Match: gi|1009108364|ref|XP_015884356.1| (PREDICTED: zinc-regulated protein 8 [Ziziphus jujuba]) HSP 1 Score: 152.5 bits (384), Expect = 7.700e-34 Identity = 101/199 (50.75%), Postives = 134/199 (67.34%), Query Frame = 1
BLAST of Spo20562.1 vs. NCBI nr
Match: gi|743885691|ref|XP_011037628.1| (PREDICTED: uncharacterized protein LOC105134789 [Populus euphratica]) HSP 1 Score: 149.1 bits (375), Expect = 8.500e-33 Identity = 99/201 (49.25%), Postives = 130/201 (64.68%), Query Frame = 1
BLAST of Spo20562.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTZ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_141420 PE=4 SV=1) HSP 1 Score: 386.7 bits (992), Expect = 1.700e-104 Identity = 198/200 (99.00%), Postives = 198/200 (99.00%), Query Frame = 1
BLAST of Spo20562.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BVZ4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g186170 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 4.100e-34 Identity = 90/128 (70.31%), Postives = 102/128 (79.69%), Query Frame = 1
BLAST of Spo20562.1 vs. UniProtKB/TrEMBL
Match: B9H111_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s01400g PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 1.700e-32 Identity = 94/199 (47.24%), Postives = 128/199 (64.32%), Query Frame = 1
BLAST of Spo20562.1 vs. UniProtKB/TrEMBL
Match: B9RXK6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0904330 PE=4 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 8.500e-32 Identity = 101/214 (47.20%), Postives = 141/214 (65.89%), Query Frame = 1
BLAST of Spo20562.1 vs. UniProtKB/TrEMBL
Match: I1KND2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G260700 PE=4 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 3.600e-30 Identity = 93/196 (47.45%), Postives = 127/196 (64.80%), Query Frame = 1
BLAST of Spo20562.1 vs. TAIR (Arabidopsis)
Match: AT4G04630.1 (Protein of unknown function, DUF584) HSP 1 Score: 120.9 bits (302), Expect = 8.700e-28 Identity = 85/192 (44.27%), Postives = 115/192 (59.90%), Query Frame = 1
BLAST of Spo20562.1 vs. TAIR (Arabidopsis)
Match: AT4G21970.1 (Protein of unknown function, DUF584) HSP 1 Score: 115.9 bits (289), Expect = 2.800e-26 Identity = 79/188 (42.02%), Postives = 105/188 (55.85%), Query Frame = 1
BLAST of Spo20562.1 vs. TAIR (Arabidopsis)
Match: AT3G45210.1 (Protein of unknown function, DUF584) HSP 1 Score: 73.6 bits (179), Expect = 1.600e-13 Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 1
BLAST of Spo20562.1 vs. TAIR (Arabidopsis)
Match: AT5G03230.1 (Protein of unknown function, DUF584) HSP 1 Score: 71.2 bits (173), Expect = 7.900e-13 Identity = 58/150 (38.67%), Postives = 72/150 (48.00%), Query Frame = 1
BLAST of Spo20562.1 vs. TAIR (Arabidopsis)
Match: AT5G60680.1 (Protein of unknown function, DUF584) HSP 1 Score: 70.9 bits (172), Expect = 1.000e-12 Identity = 51/137 (37.23%), Postives = 72/137 (52.55%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20562.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20562.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20562.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo20562.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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