Spo20521 (gene)

Overview
NameSpo20521
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L24
LocationSpoScf_00305 : 469906 .. 479768 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCCTCCTTGTCCAATTGTCAGATTACCCAATCCTAATAACATTTTCTCTCTCCTCTCCCAAACCACCACCGCCTCCATCAAGGTCCTCACTCCTCAGCCACCACCTCTCCACCTCTCTTTCTCTTCTCTTGCAATCAACCACCACCTTCACAACGAACTGCTCCATCACCGCCTTCGCAACGACCACCTCCACTGCCGCCTCACGTTGACCCCATCGATTTTCGTAAGAGCCGCTTCCACCCTCACGACTGTCGACATATTCTATGGCATATCCTTCTAGTAATTTCTTCAATTTCTCTCTCCTGTTCTTCACATGAGAGTTCATCAATGACTACCAATTGATTTTTTCAATCAATTTCTGATAAAAATAGGAAGAATTGAATTAATTTGATAATGACAAATCTTTTTGTTCCAGCTGTAATCAGAATCTCTAAATCACCATCTATTTTATCGATCTATTCTCTTGCCAATTTTAATTTATTTGACTAACAATGCTCATCTAGCATTGTACATATATGTCATTTGTTTTTGTGATTACACTTGTAAACAATTACGTCGGATCGGAGCAATCACTCCATTCTTCAGTTATAATCCTTTCTCCCCTGTTAAATGAATCAAAATAGAAAACGATGATAATTGATTGGAATTGAATTGGAGAATGATAAACAAGCTACAAGCAGTGGGTTGGATTATCAACGGGCTGGGGTCCTCGCAGCGGGTTGAATCTTTTGCTCTCTGTATTGCTTATTTGCTCCATCCTCCACGGCCCATATGAATGTGAAATGCTTAATTTGAAATTCCTAGTTTTACCCAAACATAGTATTTGGAATTTAATTCCTGTATTTGAATTACAGATTTGAAATGAATCATTTCAAATGAAATGATTGTTTCCAAACACTACCTTAGTTATTTGTATTTCGTCTGTTTAATGCTGAGTTCTTTTTAATTTGTACCAGGGTTTCTGTTTGATTAAGGATGGGATGGAAGGCGGCTCAAAAACTTATTAGGAATTGGAAGATTCTGAGAGGGGATAATGTAAGTTCCCCCAAATTGAAAATTTTCTTAAACCCTTGCTTTCTTTTTTGTGAAATCTCATAATTATGTCGTTGATTGTTTTTCTTTTTTTGCTGGTGGGGTTTCATTTTTTATTGTTTTTGCATAGGTGATGATAATTAGGGGCAAAGATAAAGGTGAAACCGGCACTGTTAAGCGTGTGGTTCGATCTCAGAATCGTGTTATTGTTGAGGGAAAAAACCTTGTAAGATTCTTTCTTTCTCTAAGAAAATAATACATATGTTATGGTGGAAATGGATTTTTGTAAATGTTGCTTCTCAAGAGGATCTTAAAATGGTGCATGTAGTTCGTTTATACTTAATTAAATAATGTCATAAGTAATGTTGTTAATAACAATTAGTAGAGTGATTGAAATTCATTGGAGTATTAGTTATTGTTCATTCTAGAGAGTATGGTGTTTTAACTCTTAAGTCATTGGTTATTTTATATTGCTTTAAATATCGCCATCAAAACTAGTTTACATCTCAGCTGATCCATTTGGATGTGGTCATGCAGAGGTAGATGACATGATGTTGTGGTTTGAATTGTTTTTTTGAAACTTTTTTTTTTCCCGGTTCGGTGTGCTCCTCTTAGAGAAAACATGAAAGTTTTTTGATAAAAAACAGAGATGAGGTAGATGCTATTACATTTTTAATGGAGACAAAGAACCACATCACTTCAAAATCTCATGTTAAAGTCCAAGGGCTATCATTGGCCTATTATATTAGGACAACTCCATATTAAAAATTTATCCTACTCTTTAGGGATAGGTTAGAGTAACTGACATTTCATTCACTAATACGAAGATCACGATGTGAGTATTATTCTAATTTCTAAGTATATTGATCAATTGGAGTTATTGTTACTCTAAGATCACATTATGAGACTTGTGACTTATGAGCATCTTTTATTGAAGAACAACCTCTTGAGTTGGTTGATTTTTGGATAATCATTCAAATTACAGTACATTTCATTTCCCTTTTCGATTTTCAGGCCCCTATCACAAACATAAGCTTAATTAATTGAAAATATTGTACACTTAGAAAAAGTCAAAGGCGAAGAACCCCATTGGCTTTTCACTTTCAGAGAGAGAGAGAGAGATGAGCTCTGCTTGGGAGAGGATTCCATCTTTTCTGATGCAACGCTGCTGCATCCTACGAAGTATATCTTGTCTTATGGTAAGACTAAAAGACTGCAAGTAACTAATGGCCTAGCAATATCCCTACCCTCTTAGTTTCCTTGTGCCTTTCGTTATTCTGTGTCTTCCATAGTGATCACCTATCATTTCATCCGTTTCCTGACTCACCATATTCTTTCTTGAATATAACTCATTCAATTGCTCATTCTATTGAGCATTCCCTATCGGCATGCGAAGAGGCCATTCCATCAAGTGCCAATGTTCAAAATGCATCGAGAGTGTTGACTTGAGATGCCACCAGTGCAAGGAAAATGTGGAGACTGAAACTTCACTACAGGACTTAAGACTTTTGAGGTTCATCAAGCTGCCATATTTTCTTCCAGAACGTAGAAGTGACACATGAAGAGCCACCATTACTTAGTAATAGGGTTTCCGAACCCCAATTTTAGAACGATGCTACGCCTGAGTGATTAGTACACAACAGAATTTTCAAGACATCATCAGACTTCAAAACCATCATACGAGTAGCATTTTGCTTGTTTGAACAATTGCTATCCTTATTGATTCATTGTTCCAACATTGGCCTCTTTTCCCCCCCTCTTCAAACTGGAGTTACCTGTCTAAAAGACAATGCACGATTAGTACACTTTCGTCCAAATTTTTAGCTGTTATGTCACCAACCAGTCATATACTCATGTACGTCCATCTTTGAGTAATAATTGCTATGAAATTCGGATGGTTACCAAAAGTATCCTCCAGGAGCTCTTTGTTGGCATGATATTTAGCCTTCATCAACTTGGCTTATTAAAGTCTCAAGTAATAAGTTGATCTGGTTTTATGGGCATGGCTGAATTTAACTCCATATTACTTTTCTAACCATGTTCAACATTTAACTTACACAGTTTTTACCACGCGATTGAATGGTCTTCTAAAAAAAAATTCTCCAGTGAGCCAATATTCAGATTTTGTTAATTGACCAAACTGGTAAAAAAAAGTGATGGTTGGCAAAAATTTCGTAAATAGAAACTCTCCGGCGACAATTTGGTAAATTAATATAAATCCTGTGAGATTTGATCCATAAATTAGAACGGAATTTGTTATCCTTTGTTTTTTTTAAAGATTTTTTTGTTATTATATATACTCTTTTTGTCTTCTTCGAAAACCCATTTCTTATTTTGGAAAAACCCTATGATAAGTTTTATTTACTCTCTCCCTCTTTAATTTTCTTCCCCATGTAGTATTGTTCTTAGTTTTCATGAACTATATTCTTTAGTAGGAATTACAAAAATTCAAAGGATAAAAAGAATGATATTTATTAGATATAAAAAAAAATACCAAGAATGATTAATTTTTTCAGGGAATCGGATTGCGAACGACTAGAAAATGTGGTGAAGAAGCTAGAGTAGGGCAGAGAAAAAGAGAACCCAAAGTATTTATTGGACAAAAATAAAACAAAAATTAACATAGAAGTATTTTTTTTATAAAAGGATTTGAAGTATAAAACATGTAAAGATAAAGGGAAGAAAAAACCAAATAATATGTTTTTAGTATTTTTGTAAATTAGATGGGAGCAAATCAAGGAAAATAAAAGGTAAAGAAGGGGAAATGAAAAAGTAACTTTTAAGTGTCATCCACATGATAAAACAAACTCCGGGCAATTTTATGTCTCAAATGTCACCAGATTCATTTTAATGTACTAAATTGACACCGAAGAGCTTTTTTACCAAATTTTCACTAACAATCACTTCTTTTTTTACCAATTTAGTTAATTGGCCAAGAAAAAGTGTTCCTTGCGCATTCTAGATCTGTTGGGTTCATGTTGTAGTTGGTGTACAGGGTTCCAAACCTTATTTTGAGTTCTTTTCTCTTTTGATGAATTAGTTTATACCCTGTGTATGTAATTTAAAGTTCGTTTATATAGTCTATATAATAAAAATTTTCAAAAAATAAAATTTGATGCATTTGGAGTGTAGTGAAATTGAAAGAACATCTAATTAAGGAAGAGAAGTAGAAATGATGAATATAAATGATGGTTTTACAAAAAAAAAAAAATCAAAGAGATGACACATGACATCATGGTATGCAAAACATCCCGTTTTAAGTTTTAAAATATTAACATAATTTTTTTTTTAGAAAAATTCTCATTGGTTTCTTTCTAAATGTGACTTTTGTCAATGGTACACAATATCTAATTTGCTTCTCTCTGTTACCCTTATACTAGTGATTTAACAACTACACACTGCACCTAACAATTATTAAATGTTAGGCACTGTTTGATGAAGCTTCTATAAAAATAACTTCTAGAAAAAGTTTTTCAGGAACAGTTTCTAGGGTAACACTTTCGAGAAATAGAAATGTTTTACCACAAAAATTTAAAAGCACTTGTTTGATATTGTTTTCCTCATTTTTTGATAGTGAGAAATTCTTTTTGCAATATATTTTAGCTTTAGTAAATAAACCACCACGAATTGAAAAAAATTGAAAAGAAAGGAAAATTACTCTATCCACGTGCAATGCGATGAAGGAAGATGTCCAACATTCAGATGAACAACTAGACAAGTGTCAAATGACATAAAAATGTCAAGTTGCAAATAAACAAGCTCAATTGTTAATAATCATGATTTTTTGATGAATTCCAGTAAAGCAAAGTAAACACTTCCGTGCGTTCAAGGGAAAAATTACGGAGTAAATCAACATCTTTAAAAGAACAGGAAAAGGAGGCACTGCTCAAAAATCAAAATATTCCAATAAAAAATATATCAAGCAGCATACCCTTTATGATTAAGAAGGAATGAATCGGTCTATAAAATATCAAAGAATTTTAGTTCGACAAAATATTTTGAAATTACTAGTAATCTTTTTAAGTGGACGAGAAGGTGATGACGATGGTGGTGAATTTCATTGTTTCATTTTTCCGTCGAGAAATTGATGTCAATAGTTATGGTGGAAAATGTTCGGTAATGATGGAGGGTTTGAGAGGAGGATGATACTGGGTTTGATGAAAGGAGAGAGAAATAGGTGTAAAGAATGTTTTTAGATGGACATGGAGGGGCATTGTTGTAATGATTAGGGCATGATTGTCCAAAAGTCTGGGTTTGATGAAAGGAGAGAAAAATAGGTGTAAAGAGTGTTTTTAGATGGACATGGAGGGGCATTGTTGTAATGATTAGGGCATGGTTGTCCAACAAAAAGTTTCACTAAAGGGAGAAAATAGCTCCTCAAGAAACAATTTGTATTCATTCCAAGAAGCTATTTTGGGCTTCTAGAAAAATTGATTCTCCTCCTTGTAAACCCCGCGTTTGGCCAAGAAACTGTTTCTGAAGTTGAGAAACACTTCCAGAAGCTTGGTCAAACAGCATACTGACCTTGAGCATTCACTAATCTATCAATCTAATACTGTTTATTAATGTTATAGGCATTGTAGTTAGTAAGTCAATAGTATAAGGGTATAATCCAATTTGATTTTGTTTACCATTGAGAAAAGTCGGAAACAGAAGGGTACCAATGAGAATTTCCCAAAAACTTTTGTAGAACCTGCTTGACATATTTCACTGTTGACACAGTGAGTTTATATGGGTGTTCAGTGAGCCACTATTTGGACATCAAGTGTTTCCAAGGAAGGGCAGAAGAAGAAGAATATTCCTTCTGCCTTCTAGATCTGTTGGGTTAATGCTTTAGTTGGTTTACGCTGTTTACTAAATTTATTTTTGAGTTTTTTTCAACATAAGTATTTATTTTAACGTCTATAGAACCTGCTTGGTATATTTCTCTGTTTTGTTCCATGTAAGTTAGTGTTAGAATTCTTCATGCTGTAAAATAAATGAAACTTATGTTGTATTCATGTTGTAGTTGGTGTACAATGTTTCTTAATCTTATTAGTATTGGTTCTGAAGAGTTAAAAGTTCTAAAATATACATCCTTCGTTTCTAAATACATGCAACAATTTGACTTTTACACTATTCACATACTAAGTTTGAGTTCAAATTTTAACTACTACTCCCTCCGTTCCATAATGATGTTCCAATTTTCTTTTTCACGTTTTCCAATGCACGTTTTATATCATTTTTATCTCTAATTACACAATAATAAAAATTAAAAAAATTCATATTCTTAAGGACTCATTGAGATGAATCAAACAAGACCCACATGATTATGTTTTTTCTAATATATTGGATAAAATTTAGAAGATTGTCTTCAATTGTGAATAGAAACCTGAATTGGAACATCATTATGGAACGGAAGGAGTATATCGAATAAATGATATATTTAAACTGTGTTTAGATTAGCCTCAATAATAATTTTCAAATTATCAACTTTTTTTAACTTTTACTATTTCCCCAGTTCCTTAATATTGCACCATGTTTACTTTACGCTTCCCAATACATGACTTTGAATCTTAATCTTTTGAATTATGCATAAGTAAGAATTAAAAAAATTGATATTTAGAAAGTATAACTATATATTGATACAAATCTAATAAGATCCTACATGATTAAATATTTTCTTACGTATACATTACAAAAGATGGTCAAAGTCACAACGTGAATAGTGTAAAAGTCAAGATGGTGCGATATTCGTGGAACAGAGGAAGTATACACACTTAATAGTTGATGGTCAAAGTTAAGCATTGGCAAGCAACCGTTGCGTGTGTTTAGAAACGGAGGAAGTATGGAATTCATTTCAGTTAGCAGGTTTCATTTTGGTAGAATGTATTGATTTACTGATTCAGTTGCTGATTTGGTAGGATTTAAACTATTCCTGAATTTCTCAAATGCATTGCAGGATTGAACATACCAATTGTATGTGATGGAAATTGAAGTATACGTTGTAGGTTGCTGTTTTATTCAGGTTCCTTTGATAGTCTAGCCGGTATAGGCTACTGCTCATGGCTTCTGTTTTTGTAACTTACCAGGTCAAAAAACATATTAAACAAGGGCAAGGCCACGAAGGTGGCATTTTTACAGTTGAAGCGCCACTACATGTCTCAAATGTGCAAGTTGTTGATCCAGTTACTGGGTATTGTCAACTTCTCATTTGTCTCCACTAACTTACTAGTTATTCTGTATATAATAGATTCCAACGAAATGTTCGGGTCATGTTCTTGTCTGCAGAAAACCTTGCAAGGTAGGAATTCGATATCTAGAGGATGGCGGAAAGGTCAGAGTTGCGAGAGGTATAGGAGCATCAGGGGCCATTATCCCTCGCCCTGAAATTTTGAAGATAAGGACCACACCAAGGCCTGCTGCTCGTATGTATCTGATTCTTACTTTCTTCCATTTGATATTCACAGAATCTTTAAGTCATAGGAAGCATTTGACTTTTATGGTCAAATTTAATTAGCTTTGACACCACTAGACAAGCTGTAAATGTGCAAAGTTATTGTTTAAGTTCAGCAATGGTCGTCACACATTAAAATTCTATGTAACTCTTTATAAATAGTAGCCAAAATTAACCAACGTTGACCACAAAACTCAATTGTGGCCAATTATTATGAGATAGGTAGTAGAAGGGTTTTCATGTGAAGCTGGATTTTTCTTTGATTAATACGGGGATTGTTTAGAATGTATCATATAGTTTGGCCAAGTTAGCCTGTATTCTTTCTTCTTCTTTTTAAAAAAAAGTTTCAGGTCCATTAGGTTCAAATTCGGACTAATAAGTTTAATTTACACACAAACAAAATAAAAATAAAATATAAGGGCTAGTACGCTCTGATTGGGACTAGTGATTTCAGGTAGATTCACTTTGGAATTTTCAAGGGCTTCCAGGTGGAGAAAGCACTGCCTTAGAGCCAAGTCGTGGTCATATAGTTTTTAAAGATGATCTTGTTGGGGTTTATAGTAGCAAAAGATGATAGGAAATGTGGGAGATGAAGATTTTGTGAAAAGGGCCAGAAACAAATATATCGAGTCTTAAGTTTTAAGGCAAAGGACCAATCTCAACTTCGCCTGTAGTAGCATCAATATGGTATTTGTGTAGTGAATTCTTTGTTTATGAAACCTAATTCCAACAGAGAACTGATGAAGAATTCTGTGTATATGCTGTTCTCAGCACATTTGTTTGACCCTAGAAAATCTTTGCCGAAACATCTCTGTATTTATGAAAACTAGACATTTCCTTTTCCAAAATGTCTCACTTTTTTTTTTGACGGTATCCAAAATGTCTCCCTTTTGTTTTGCAATCTTCAAAACTCAAGTTTCAATTTGTCTTCTACAGTTCTACTATAACAGCCCTTTATCTCTTGTATCCTATATAGTAGGTTTGTTTTTATAACTCTTGCTATTTCAAAGACTGGAAAAATGAAAAATAAAAAATTTAAAGCAGATTTTTCAAAATTTTCTGATGAGCTGAGAAATGGTACACAAAAGCTCATCAGAAAAGTGTTCCCCTAGAAATTTCTGGAAAGGTTTCAAATATTATTGGAAGTTCTATAAAAGCCGCACATAACAGTACAACACTATTCCCATGCGTCCACAAATTACTATCAGTTTGAGTGATTTTGTCCAAACAATTGTTACCTACAGAACACACTACTCCCTTGTTAAAGAATACTTGATACATATCAAGTTAGCCAAGCTTGTCCAAAACTTCAAATGTAACTGTTACGAGGAATGCGATGCAAAACAATGTTGGCAACATTCTAATGCTGCCCTCACATCAACATGTGCTCGGGCTGATATTATTGAAAATAACTTCCTAAACTCTTAATATGGAGGGTTTGTTTATTTGCTTGCACGTTCTTATGATAGTCTTGAGAAGCATGAGAAAACCTTCTCCAAGGGAGTTCTTGATAAAGGGTCAGCCTCAAATATTAAAACTTGGATGTGTTTTTCCTTTTTGTCTCTGCGTTGGGTTTGTTGTTGTGCTTACTTGATTTAGTGTTTATCGAGTATTAGAGTCTACTCTACTAAAGGGTTGTATTTCATACTTTTCTGAAATGTCATAAAAAGTAATACTTGAGACAATTTAGCATTATCCTCGTGCTTGTGAACTAGTGATATCTAATTCTAGGGGAGCTCATTTCTTGTGCTTCTCTACTTGTTCTCTTATCCATTTCTTTCTTCTGCAGCTGGTCCTAAGGATACCGTGATGGAATTTGTGCTGGAAAAGACATACAATTCTAAGACCGGAGAGGGGATGCCGAACCTTTAAGGGGGCCAAATATCTTTTACTTATGCTACTATTAGATCAGCTAGGTGTATCTGATGGCCAAGGGATTGGCTCCATGGCATTATTTTCATAATGTTAATGCAGTAGTTTCTCTAGAATGTTTTGGGTTAATAATTCTTTTTTTTTAAATTTTTTTTATTGATAATTGGGTTAATAATTCTAAGGTATCTTGCTTACACTCAAAAATTCATGCGAGTGATTTGTTCTTTGGAAGAATGATCTCTTGTGTGTGTTTTGCTTAGTTCTCACAAAAATGTTAGTGTAGGCTTTATTCTGTTTTCTGTTACTCCTATATGGTATTGTCGGAGAAAGTGGTGAACTGAAACCTAAAGGAACCGGCTTATTGACCTCAGAATCATTACCATGTTTATCAGTATAATATACTTCCTCTGTTCATTTTTACTCGCAACGTTTGTCACTTTCATGCATGTCTATGCACAATTTTGATCACTAATATCTTTAATTCTTTTTAAGTAAAAATTATAAAAAGTTAATATTTTG

mRNA sequence

TCTCTCCTCCTTGTCCAATTGTCAGATTACCCAATCCTAATAACATTTTCTCTCTCCTCTCCCAAACCACCACCGCCTCCATCAAGGTCCTCACTCCTCAGCCACCACCTCTCCACCTCTCTTTCTCTTCTCTTGCAATCAACCACCACCTTCACAACGAACTGCTCCATCACCGCCTTCGCAACGACCACCTCCACTGCCGCCTCACGTTGACCCCATCGATTTTCGTAAGAGCCGCTTCCACCCTCACGACTGTCGACATATTCTATGGCATATCCTTCTAGTAATTTCTTCAATTTCTCTCTCCTGTTCTTCACATGAGAGTTCATCAATGACTACCAATTGATTTTTTCAATCAATTTCTGATAAAAATAGGAAGAATTGAATTAATTTGATAATGACAAATCTTTTTGTTCCAGCTGTAATCAGAATCTCTAAATCACCATCTATTTTATCGATCTATTCTCTTGCCAATTTTAATTTATTTGACTAACAATGCTCATCTAGCATTGTACATATATGTCATTTGTTTTTGTGATTACACTTGTAAACAATTACGTCGGATCGGAGCAATCACTCCATTCTTCAGTTATAATCCTTTCTCCCCTGTTAAATGAATCAAAATAGAAAACGATGATAATTGATTGGAATTGAATTGGAGAATGATAAACAAGCTACAAGCAGTGGGTTGGATTATCAACGGGCTGGGGTCCTCGCAGCGGGTTGAATCTTTTGCTCTCTGTATTGCTTATTTGCTCCATCCTCCACGGCCCATATGAATGTGAAATGCTTAATTTGAAATTCCTAGTTTTACCCAAACATAGTATTTGGAATTTAATTCCTGTATTTGAATTACAGATTTGAAATGAATCATTTCAAATGAAATGATTGTTTCCAAACACTACCTTAGTTATTTGTATTTCGTCTGTTTAATGCTGAGTTCTTTTTAATTTGTACCAGGGTTTCTGTTTGATTAAGGATGGGATGGAAGGCGGCTCAAAAACTTATTAGGAATTGGAAGATTCTGAGAGGGGATAATGTGATGATAATTAGGGGCAAAGATAAAGGTGAAACCGGCACTGTTAAGCGTGTGGTTCGATCTCAGAATCGTGTTATTGTTGAGGGAAAAAACCTTGTCAAAAAACATATTAAACAAGGGCAAGGCCACGAAGGTGGCATTTTTACAGTTGAAGCGCCACTACATGTCTCAAATGTGCAAGTTGTTGATCCAGTTACTGGAAAACCTTGCAAGGTAGGAATTCGATATCTAGAGGATGGCGGAAAGGTCAGAGTTGCGAGAGGTATAGGAGCATCAGGGGCCATTATCCCTCGCCCTGAAATTTTGAAGATAAGGACCACACCAAGGCCTGCTGCTCCTGGTCCTAAGGATACCGTGATGGAATTTGTGCTGGAAAAGACATACAATTCTAAGACCGGAGAGGGGATGCCGAACCTTTAAGGGGGCCAAATATCTTTTACTTATGCTACTATTAGATCAGCTAGGTGTATCTGATGGCCAAGGGATTGGCTCCATGGCATTATTTTCATAATGTTAATGCAGTAGTTTCTCTAGAATGTTTTGGGTTAATAATTCTTTTTTTTTAAATTTTTTTTATTGATAATTGGGTTAATAATTCTAAGGTATCTTGCTTACACTCAAAAATTCATGCGAGTGATTTGTTCTTTGGAAGAATGATCTCTTGTGTGTGTTTTGCTTAGTTCTCACAAAAATGTTAGTGTAGGCTTTATTCTGTTTTCTGTTACTCCTATATGGTATTGTCGGAGAAAGTGGTGAACTGAAACCTAAAGGAACCGGCTTATTGACCTCAGAATCATTACCATGTTTATCAGTATAATATACTTCCTCTGTTCATTTTTACTCGCAACGTTTGTCACTTTCATGCATGTCTATGCACAATTTTGATCACTAATATCTTTAATTCTTTTTAAGTAAAAATTATAAAAAGTTAATATTTTG

Coding sequence (CDS)

ATGGGATGGAAGGCGGCTCAAAAACTTATTAGGAATTGGAAGATTCTGAGAGGGGATAATGTGATGATAATTAGGGGCAAAGATAAAGGTGAAACCGGCACTGTTAAGCGTGTGGTTCGATCTCAGAATCGTGTTATTGTTGAGGGAAAAAACCTTGTCAAAAAACATATTAAACAAGGGCAAGGCCACGAAGGTGGCATTTTTACAGTTGAAGCGCCACTACATGTCTCAAATGTGCAAGTTGTTGATCCAGTTACTGGAAAACCTTGCAAGGTAGGAATTCGATATCTAGAGGATGGCGGAAAGGTCAGAGTTGCGAGAGGTATAGGAGCATCAGGGGCCATTATCCCTCGCCCTGAAATTTTGAAGATAAGGACCACACCAAGGCCTGCTGCTCCTGGTCCTAAGGATACCGTGATGGAATTTGTGCTGGAAAAGACATACAATTCTAAGACCGGAGAGGGGATGCCGAACCTTTAA

Protein sequence

MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPEILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20521.1Spo20521.1mRNA


Homology
[Close]
BLAST of Spo20521.1 vs. NCBI nr
Match: gi|731328900|ref|XP_010675307.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 297.7 bits (761), Expect = 1.200e-77
Identity = 141/159 (88.68%), Postives = 153/159 (96.23%), Query Frame = 1 

		  

Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRNWKI+RGDNVMIIRGKDKGETGTVKRVVRSQNRV++EGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRNWKIVRGDNVMIIRGKDKGETGTVKRVVRSQNRVLIEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQ+VDPVTGKPCKVGIRY EDG KVR++RGIGASG+IIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQIVDPVTGKPCKVGIRYQEDGTKVRISRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP APGPKDT ++ VLE+TYN KTG+GMP+L
Sbjct: 121 ILKIRTTPRPTAPGPKDTPLDLVLEETYNPKTGKGMPDL 159
[Close]
BLAST of Spo20521.1 vs. NCBI nr
Match: gi|731328898|ref|XP_010675305.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 295.0 bits (754), Expect = 7.600e-77
Identity = 141/159 (88.68%), Postives = 152/159 (95.60%), Query Frame = 1 

		  

Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRNWKI+RGDNVMIIRGKDKGETGTVKRVVRSQNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRNWKIVRGDNVMIIRGKDKGETGTVKRVVRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQ+VDPVTGKPCKVGIRY EDG KVR++RGIGAS +IIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQIVDPVTGKPCKVGIRYQEDGTKVRISRGIGASRSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP APGPKDT ++ VLE+TYN KTG+GMP+L
Sbjct: 121 ILKIRTTPRPTAPGPKDTPLDLVLEETYNPKTGKGMPDL 159
[Close]
BLAST of Spo20521.1 vs. NCBI nr
Match: gi|731362998|ref|XP_010693190.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 291.6 bits (745), Expect = 8.400e-76
Identity = 139/159 (87.42%), Postives = 152/159 (95.60%), Query Frame = 1 

		  

Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRNWKI+RGD+VMIIRGK+KGETGTVKRVVRSQNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRNWKIVRGDDVMIIRGKEKGETGTVKRVVRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQ+VDPVTGKPCKVGIRY EDG KVR++RGIGASG+II RPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQIVDPVTGKPCKVGIRYQEDGTKVRISRGIGASGSIISRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP APGPKDT ++ VLE+TYN KTG+GMP+L
Sbjct: 121 ILKIRTTPRPTAPGPKDTPLDLVLEETYNPKTGKGMPDL 159
[Close]
BLAST of Spo20521.1 vs. NCBI nr
Match: gi|747089940|ref|XP_011092630.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic [Sesamum indicum])

HSP 1 Score: 290.4 bits (742), Expect = 1.900e-75
Identity = 139/159 (87.42%), Postives = 152/159 (95.60%), Query Frame = 1 

		  

Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLI +WK+LRGDNVMIIRGKD+GETGTVKRV+RSQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIHHWKVLRGDNVMIIRGKDRGETGTVKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIF+VEAPLHVSNVQV+DPVTGKPCKVGI+YLEDG KVRV+RGIGASG+IIPRPE
Sbjct: 61  QGHEGGIFSVEAPLHVSNVQVLDPVTGKPCKVGIKYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIR+TPRP   GPKDT MEFVLEKTY++KTG GMP+L
Sbjct: 121 ILKIRSTPRPTTLGPKDTPMEFVLEKTYDAKTGMGMPDL 159
[Close]
BLAST of Spo20521.1 vs. NCBI nr
Match: gi|590717151|ref|XP_007050544.1| (KOW domain-containing protein [Theobroma cacao])

HSP 1 Score: 290.4 bits (742), Expect = 1.900e-75
Identity = 138/159 (86.79%), Postives = 150/159 (94.34%), Query Frame = 1 

		  

Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIR+WK+LRGDNVMIIRGKDKGETG +KRV+RSQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
            GHEGGIFTVEAPLH SNVQVVDPVTGKPCKVG+RYLEDG KVRV+RGIGASG+IIPRPE
Sbjct: 61  PGHEGGIFTVEAPLHASNVQVVDPVTGKPCKVGVRYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP   GPKDT M+ VLEKTY+SKTG+GMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDLVLEKTYDSKTGKGMPDL 159
[Close]
BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CMN0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g085290 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 8.200e-78
Identity = 141/159 (88.68%), Postives = 153/159 (96.23%), Query Frame = 1 

		  

Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRNWKI+RGDNVMIIRGKDKGETGTVKRVVRSQNRV++EGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRNWKIVRGDNVMIIRGKDKGETGTVKRVVRSQNRVLIEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQ+VDPVTGKPCKVGIRY EDG KVR++RGIGASG+IIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQIVDPVTGKPCKVGIRYQEDGTKVRISRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP APGPKDT ++ VLE+TYN KTG+GMP+L
Sbjct: 121 ILKIRTTPRPTAPGPKDTPLDLVLEETYNPKTGKGMPDL 159
[Close]
BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FBN8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g085270 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.300e-77
Identity = 141/159 (88.68%), Postives = 152/159 (95.60%), Query Frame = 1 

		  

Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRNWKI+RGDNVMIIRGKDKGETGTVKRVVRSQNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRNWKIVRGDNVMIIRGKDKGETGTVKRVVRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQ+VDPVTGKPCKVGIRY EDG KVR++RGIGAS +IIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQIVDPVTGKPCKVGIRYQEDGTKVRISRGIGASRSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP APGPKDT ++ VLE+TYN KTG+GMP+L
Sbjct: 121 ILKIRTTPRPTAPGPKDTPLDLVLEETYNPKTGKGMPDL 159
[Close]
BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Match: A0A061DRL4_THECC (KOW domain-containing protein OS=Theobroma cacao GN=TCM_004312 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.300e-75
Identity = 138/159 (86.79%), Postives = 150/159 (94.34%), Query Frame = 1 

		  

Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIR+WK+LRGDNVMIIRGKDKGETG +KRV+RSQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
            GHEGGIFTVEAPLH SNVQVVDPVTGKPCKVG+RYLEDG KVRV+RGIGASG+IIPRPE
Sbjct: 61  PGHEGGIFTVEAPLHASNVQVVDPVTGKPCKVGVRYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP   GPKDT M+ VLEKTY+SKTG+GMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDLVLEKTYDSKTGKGMPDL 159
[Close]
BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Match: A0A068V4X6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042440001 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.200e-75
Identity = 140/159 (88.05%), Postives = 149/159 (93.71%), Query Frame = 1 

		  

Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLI +WKILRGDNVMIIRGKDKGETG VKRV+RSQNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIHHWKILRGDNVMIIRGKDKGETGLVKRVIRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDG KVRV+RGIGASG+IIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP   GPKDT M+ VLE+TY+ KTG GMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDVVLERTYDPKTGLGMPDL 159
[Close]
BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Match: I3T887_MEDTR (50S ribosomal L24-like protein OS=Medicago truncatula GN=MTR_1g047130 PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.200e-75
Identity = 138/159 (86.79%), Postives = 149/159 (93.71%), Query Frame = 1 

		  

Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIR+WK+LRGDNVMIIRGKDKGETG +KRVVRSQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGVIKRVVRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAP+H SNVQV+DPVTGKPCKVG +YLEDG KVRV+RGIGASG+IIPRPE
Sbjct: 61  QGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP+  GPKDT ME VLEKTY+SKTG GMP L
Sbjct: 121 ILKIRTTPRPSVAGPKDTPMEIVLEKTYDSKTGRGMPEL 159
[Close]
BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Match: RL24_RICPR (50S ribosomal protein L24 OS=Rickettsia prowazekii (strain Madrid E) GN=rplX PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.800e-22
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1 

		  

Query: 14  KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V+II GK KG+ G V +V   +N V+V G NLVKKH K  +  EGGI T E+P
Sbjct: 5   KVKKGDEVVIITGKYKGKKGKVLKVFPEENTVVVSGVNLVKKHTKPNKMSEGGIITQESP 64

Query: 74  LHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIG 111
           +H+SN+  +DP TG P KV  ++LEDG KVRVA+  G
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSG 101
[Close]
BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Match: RL24_RICFE (50S ribosomal protein L24 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=rplX PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.400e-22
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1 

		  

Query: 14  KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G + +V    ++VIV G NLVKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNLVKKHTKPNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIG 111
           +H+SN+  +DP TG P KV  ++LEDG KVRVA+  G
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSG 101
[Close]
BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Match: RL24_RICTY (50S ribosomal protein L24 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=rplX PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.100e-22
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 1 

		  

Query: 14  KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V+++ GK KG+ G V +V   +N VIV G NLVKKH K  +  EGGI T E+P
Sbjct: 5   KVKKGDEVIVVTGKYKGKKGKVLKVFIDENTVIVSGVNLVKKHTKPNKMSEGGIITKESP 64

Query: 74  LHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIG 111
           +H+SNV  +DP TG P KV  ++LEDG KVR+A+  G
Sbjct: 65  IHISNVAHIDPKTGNPTKVAFKFLEDGSKVRIAKKSG 101
[Close]
BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Match: RL24_RICAE (50S ribosomal protein L24 OS=Rickettsia africae (strain ESF-5) GN=rplX PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.100e-22
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1 

		  

Query: 14  KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G + +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIG 111
           +H+SN+  +DP TG P KV  ++LEDG KVRVA+  G
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSG 101
[Close]
BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Match: RL24_RICCN (50S ribosomal protein L24 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=rplX PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.100e-22
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1 

		  

Query: 14  KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G + +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIG 111
           +H+SN+  +DP TG P KV  ++LEDG KVRVA+  G
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSG 101
[Close]
BLAST of Spo20521.1 vs. TAIR (Arabidopsis)
Match: AT5G23535.1 (KOW domain-containing protein)

HSP 1 Score: 279.3 bits (713), Expect = 1.500e-75
Identity = 132/159 (83.02%), Postives = 146/159 (91.82%), Query Frame = 1 

		  

Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIR+WKILRGDNVMIIRGKDKGETGT+KRV+RSQNRVIVEGKNL+KKHIK G
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
             HEGGIFTVEAPLH SNVQVVDPVTG+PCKVG++YLEDG KVRVARG G SG+IIPRPE
Sbjct: 61  PDHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTGTSGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIR TPRP   GPKDT MEFV E+TY++KTG+GMP+L
Sbjct: 121 ILKIRATPRPTTAGPKDTPMEFVWEQTYDAKTGKGMPDL 159
[Close]
BLAST of Spo20521.1 vs. TAIR (Arabidopsis)
Match: AT5G54600.1 (Translation protein SH3-like family protein)

HSP 1 Score: 67.8 bits (164), Expect = 7.000e-12
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = 1 

		  

Query: 18  GDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHV 77
           GD V +I G+DKG+ G V ++    + ++++  NL  KH+K + +G  G I  +EAP+H 
Sbjct: 76  GDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEAPIHS 135

Query: 78  SNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPEILK 124
           SNV +         +VG + LEDG KVR     G     I + ++LK
Sbjct: 136 SNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLK 182
The following BLAST results are available for this feature:
BLAST of Spo20521.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731328900|ref|XP_010675307.1|1.2e-7788.6PREDICTED: 50S ribosomal prote... [more]
gi|731328898|ref|XP_010675305.1|7.6e-7788.6PREDICTED: 50S ribosomal prote... [more]
gi|731362998|ref|XP_010693190.1|8.4e-7687.4PREDICTED: 50S ribosomal prote... [more]
gi|747089940|ref|XP_011092630.1|1.9e-7587.4PREDICTED: 50S ribosomal prote... [more]
gi|590717151|ref|XP_007050544.1|1.9e-7586.7KOW domain-containing protein ... [more]
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BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8CMN0_BETVU8.2e-7888.6Uncharacterized protein OS=Bet... [more]
A0A0J8FBN8_BETVU5.3e-7788.6Uncharacterized protein OS=Bet... [more]
A0A061DRL4_THECC1.3e-7586.7KOW domain-containing protein ... [more]
A0A068V4X6_COFCA2.2e-7588.0Uncharacterized protein OS=Cof... [more]
I3T887_MEDTR2.2e-7586.750S ribosomal L24-like protein... [more]
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BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL24_RICPR1.8e-2252.550S ribosomal protein L24 OS=R... [more]
RL24_RICFE2.4e-2251.550S ribosomal protein L24 OS=R... [more]
RL24_RICTY3.1e-2251.550S ribosomal protein L24 OS=R... [more]
RL24_RICAE4.1e-2250.550S ribosomal protein L24 OS=R... [more]
RL24_RICCN4.1e-2250.550S ribosomal protein L24 OS=R... [more]
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BLAST of Spo20521.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G23535.11.5e-7583.0KOW domain-containing protein[more]
AT5G54600.17.0e-1235.5Translation protein SH3-like f... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003256Ribosomal protein L24HAMAPMF_01326_BRibosomal_L24_Bcoord: 13..107
score: 18
IPR003256Ribosomal protein L24PFAMPF17136ribosomal_L24coord: 51..113
score: 9.4
IPR003256Ribosomal protein L24TIGRFAMsTIGR01079TIGR01079coord: 14..108
score: 4.5
IPR005824KOWPFAMPF00467KOWcoord: 17..48
score: 2.
IPR005824KOWSMARTSM00739kow_9coord: 14..41
score: 1.
IPR005825Ribosomal protein L24/L26, conserved sitePROSITEPS01108RIBOSOMAL_L24coord: 18..35
scor
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 10..108
score: 1.2
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 7..100
score: 1.5
NoneNo IPR availablePANTHERPTHR12903MITOCHONDRIAL RIBOSOMAL PROTEIN L24coord: 1..157
score: 1.4

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0016311 dephosphorylation
biological_process GO:0006526 arginine biosynthetic process
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0048481 plant ovule development
biological_process GO:0006560 proline metabolic process
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009555 pollen development
biological_process GO:0008152 metabolic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006457 protein folding
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0015979 photosynthesis
biological_process GO:0009845 seed germination
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0010162 seed dormancy process
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009863 salicylic acid mediated signaling pathway
biological_process GO:0009723 response to ethylene
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0009737 response to abscisic acid
biological_process GO:0010325 raffinose family oligosaccharide biosynthetic process
biological_process GO:0009939 positive regulation of gibberellic acid mediated signaling pathway
biological_process GO:0048444 floral organ morphogenesis
biological_process GO:0009657 plastid organization
biological_process GO:0006591 ornithine metabolic process
biological_process GO:0042538 hyperosmotic salinity response
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0006606 protein import into nucleus
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0009853 photorespiration
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010207 photosystem II assembly
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0042793 plastid transcription
biological_process GO:0010114 response to red light
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0009637 response to blue light
biological_process GO:0010218 response to far red light
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009533 chloroplast stromal thylakoid
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005622 intracellular
cellular_component GO:0009348 ornithine carbamoyltransferase complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0019005 SCF ubiquitin ligase complex
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009523 photosystem II
cellular_component GO:0005634 nucleus
cellular_component GO:0031977 thylakoid lumen
molecular_function GO:0004585 ornithine carbamoyltransferase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0010181 FMN binding
molecular_function GO:0016853 isomerase activity
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016597 amino acid binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003993 acid phosphatase activity
RNA-Seq Expression