Spo20347 (gene)

Overview
NameSpo20347
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionGibberellin-regulated protein 12 (GAST1 protein homolog 12) (Precursor)
LocationSpoScf_01687 : 19930 .. 20977 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTATTCCAATTGACATGGTACTGTTGAACTAACATTAAGATGACATAAAAGTTAGACAAAAGAAGAAACAATTATATAGAAAAGTGTACAAGTTAAACGAAAGAAATGCACGCCGGATTTACCGTTAGAAAACTCACTTTAAAGTCGTCAATTAAAACTAGCACATATCACGCCTAAAGAAACGGTTGTTGCTTCCCCACTTGAATAACCAAAAATCATCATCCTTTACTTGAAATTCAAACTACTCCTAACTTTTACTTACCAGTTACCAGTTACCAGTTACCAGTTACCAGTATATTGTATATATATATAGCTCTTTGTTACTTCATATCACTAACAAGCCATTTCCCAATCTCTCTAAATTTGCATTACGTTCCACTTTTTTGTTTGATCTCCAGAGAGAGAGAAAGAGAGAGAGGTTTAGGATATGGCAGGGCGTCCTATTTTGGGCGTTGTGTTAGTTACTTTACTGGTCTTATTGGTCGCTTTTTCAACCGTCATTGAGGTAATTTGAAAACATGAATTGGTATCGTTTTGAATTTATTTGGGTTGTATAAGAAATGAATAATGTTAAAAATGTACAGGGTAGCAACAGGCTTCGTCCAGGAGAATGCCGACCAAAATGCAAGTATAGATGTTCAGCAACATCACACAAGAAGCCATGTATGTTCTTCTGTTTGAAGTGTTGTTCCAAATGTCTTTGTGTACCAAATGGAACTTATGGCAACAAGCAATCTTGCCCTTGCTATAACAACTGGAAGACCCAGCAAGGTGGCCCCAAGTGCCCTTAATTATGTGTTAAACTATTTTTCTTCTACTTGTAACTTGTACCTGCTTATCATATTTCAGGAACCAAACTTTATCCAATTATATTTATATATATATACCACGTTACACTACGTATCATCTAATGTATTCACTACTCCATCTTTATATATCATGTACTCCCTCGTTTCACTAACTTCTTCTCGTTTACAGATTTACTATTTCTTTTTATTTGTTCTTCCCCTTTGAAATATACTCCATTTTTACAACTTTTGTCCAAAA

mRNA sequence

GGTATTCCAATTGACATGGTACTGTTGAACTAACATTAAGATGACATAAAAGTTAGACAAAAGAAGAAACAATTATATAGAAAAGTGTACAAGTTAAACGAAAGAAATGCACGCCGGATTTACCGTTAGAAAACTCACTTTAAAGTCGTCAATTAAAACTAGCACATATCACGCCTAAAGAAACGGTTGTTGCTTCCCCACTTGAATAACCAAAAATCATCATCCTTTACTTGAAATTCAAACTACTCCTAACTTTTACTTACCAGTTACCAGTTACCAGTTACCAGTTACCAGTATATTGTATATATATATAGCTCTTTGTTACTTCATATCACTAACAAGCCATTTCCCAATCTCTCTAAATTTGCATTACGTTCCACTTTTTTGTTTGATCTCCAGAGAGAGAGAAAGAGAGAGAGGTTTAGGATATGGCAGGGCGTCCTATTTTGGGCGTTGTGTTAGTTACTTTACTGGTCTTATTGGTCGCTTTTTCAACCGTCATTGAGGGTAGCAACAGGCTTCGTCCAGGAGAATGCCGACCAAAATGCAAGTATAGATGTTCAGCAACATCACACAAGAAGCCATGTATGTTCTTCTGTTTGAAGTGTTGTTCCAAATGTCTTTGTGTACCAAATGGAACTTATGGCAACAAGCAATCTTGCCCTTGCTATAACAACTGGAAGACCCAGCAAGGTGGCCCCAAGTGCCCTTAATTATGTGTTAAACTATTTTTCTTCTACTTGTAACTTGTACCTGCTTATCATATTTCAGGAACCAAACTTTATCCAATTATATTTATATATATATACCACGTTACACTACGTATCATCTAATGTATTCACTACTCCATCTTTATATATCATGTACTCCCTCGTTTCACTAACTTCTTCTCGTTTACAGATTTACTATTTCTTTTTATTTGTTCTTCCCCTTTGAAATATACTCCATTTTTACAACTTTTGTCCAAAA

Coding sequence (CDS)

ATGGCAGGGCGTCCTATTTTGGGCGTTGTGTTAGTTACTTTACTGGTCTTATTGGTCGCTTTTTCAACCGTCATTGAGGGTAGCAACAGGCTTCGTCCAGGAGAATGCCGACCAAAATGCAAGTATAGATGTTCAGCAACATCACACAAGAAGCCATGTATGTTCTTCTGTTTGAAGTGTTGTTCCAAATGTCTTTGTGTACCAAATGGAACTTATGGCAACAAGCAATCTTGCCCTTGCTATAACAACTGGAAGACCCAGCAAGGTGGCCCCAAGTGCCCTTAA

Protein sequence

MAGRPILGVVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20347.1Spo20347.1mRNA


Homology
[Close]
BLAST of Spo20347.1 vs. NCBI nr
Match: gi|902239277|gb|KNA25540.1| (hypothetical protein SOVF_005910 [Spinacia oleracea])

HSP 1 Score: 204.1 bits (518), Expect = 1.000e-49
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

		  

Query: 1  MAGRPILGVVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKC 60
          MAGRPILGVVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKC
Sbjct: 1  MAGRPILGVVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKC 60

Query: 61 CSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 95
          CSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP
Sbjct: 61 CSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 94
[Close]
BLAST of Spo20347.1 vs. NCBI nr
Match: gi|595930066|ref|XP_007215190.1| (hypothetical protein PRUPE_ppa013959mg [Prunus persica])

HSP 1 Score: 154.5 bits (389), Expect = 9.500e-35
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 1 

		  

Query: 1  MAGRPILGVVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKC 60
          MAGRP   + L+  L+LL+ FS V EG N+LRP EC+P+C YRCSATSHKKPCMFFC KC
Sbjct: 1  MAGRPYTSIFLLVSLLLLLTFSDVAEGYNKLRPSECKPRCTYRCSATSHKKPCMFFCQKC 60

Query: 61 CSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 95
          C+ CLCVP G YGNKQ CPCYNNWKTQ+G PKCP
Sbjct: 61 CATCLCVPPGVYGNKQVCPCYNNWKTQEGRPKCP 94
[Close]
BLAST of Spo20347.1 vs. NCBI nr
Match: gi|645246115|ref|XP_008229202.1| (PREDICTED: protein RSI-1 [Prunus mume])

HSP 1 Score: 153.7 bits (387), Expect = 1.600e-34
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 1 

		  

Query: 1  MAGRPILGVVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKC 60
          MAGRP   + L+  L+LL+ FS V EG N+LRP EC+P+C YRCSATSHKKPCMFFC KC
Sbjct: 1  MAGRPYTSLFLLVSLLLLLTFSDVAEGYNKLRPSECKPRCTYRCSATSHKKPCMFFCQKC 60

Query: 61 CSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 95
          C+ CLCVP G YGNKQ CPCYNNWKTQ+G PKCP
Sbjct: 61 CATCLCVPPGVYGNKQVCPCYNNWKTQEGRPKCP 94
[Close]
BLAST of Spo20347.1 vs. NCBI nr
Match: gi|970060705|ref|XP_015057126.1| (PREDICTED: protein RSI-1 [Solanum pennellii])

HSP 1 Score: 150.2 bits (378), Expect = 1.800e-33
Identity = 61/86 (70.93%), Postives = 76/86 (88.37%), Query Frame = 1 

		  

Query: 9  VVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVP 68
          ++L+++ ++L+AFS V+EG N+LRP +C+P+C YRCSATSHKKPCMFFC KCC+ CLCVP
Sbjct: 11 LLLISMFLILLAFSNVVEGYNKLRPRDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVP 70

Query: 69 NGTYGNKQSCPCYNNWKTQQGGPKCP 95
           G YGNKQSCPCYNNWKTQ+G PKCP
Sbjct: 71 KGVYGNKQSCPCYNNWKTQEGKPKCP 96
[Close]
BLAST of Spo20347.1 vs. NCBI nr
Match: gi|703147227|ref|XP_010108998.1| (hypothetical protein L484_027195 [Morus notabilis])

HSP 1 Score: 150.2 bits (378), Expect = 1.800e-33
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 1 

		  

Query: 2  AGRPILGVVLVTLLVLLVAFSTVIE--GSNRLRPGECRPKCKYRCSATSHKKPCMFFCLK 61
          A RP   ++LV  L+LLV FS + E  G  +LRP +C+PKC YRCSATSHKKPCMFFC K
Sbjct: 3  AARPYTSLLLVLALLLLVTFSNLAEAHGRGKLRPQDCKPKCTYRCSATSHKKPCMFFCQK 62

Query: 62 CCSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 95
          CC+KCLCVP GTYGNKQ CPCYNNWKT++GGPKCP
Sbjct: 63 CCAKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 97
[Close]
BLAST of Spo20347.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1B7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_005910 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.300e-50
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

		  

Query: 1  MAGRPILGVVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKC 60
          MAGRPILGVVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKC
Sbjct: 1  MAGRPILGVVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKC 60

Query: 61 CSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 95
          CSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP
Sbjct: 61 CSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 94
[Close]
BLAST of Spo20347.1 vs. UniProtKB/TrEMBL
Match: M5WRS7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013959mg PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.600e-35
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 1 

		  

Query: 1  MAGRPILGVVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKC 60
          MAGRP   + L+  L+LL+ FS V EG N+LRP EC+P+C YRCSATSHKKPCMFFC KC
Sbjct: 1  MAGRPYTSIFLLVSLLLLLTFSDVAEGYNKLRPSECKPRCTYRCSATSHKKPCMFFCQKC 60

Query: 61 CSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 95
          C+ CLCVP G YGNKQ CPCYNNWKTQ+G PKCP
Sbjct: 61 CATCLCVPPGVYGNKQVCPCYNNWKTQEGRPKCP 94
[Close]
BLAST of Spo20347.1 vs. UniProtKB/TrEMBL
Match: W9S164_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027195 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.200e-33
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 1 

		  

Query: 2  AGRPILGVVLVTLLVLLVAFSTVIE--GSNRLRPGECRPKCKYRCSATSHKKPCMFFCLK 61
          A RP   ++LV  L+LLV FS + E  G  +LRP +C+PKC YRCSATSHKKPCMFFC K
Sbjct: 3  AARPYTSLLLVLALLLLVTFSNLAEAHGRGKLRPQDCKPKCTYRCSATSHKKPCMFFCQK 62

Query: 62 CCSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 95
          CC+KCLCVP GTYGNKQ CPCYNNWKT++GGPKCP
Sbjct: 63 CCAKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 97
[Close]
BLAST of Spo20347.1 vs. UniProtKB/TrEMBL
Match: M1BA38_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402015689 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.800e-33
Identity = 61/86 (70.93%), Postives = 75/86 (87.21%), Query Frame = 1 

		  

Query: 9  VVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVP 68
          ++L+++ ++L+ FS V+EG N+LRP +C+PKC YRCSATSHKKPCMFFC KCC+ CLCVP
Sbjct: 11 LLLLSMFLILLTFSNVVEGYNKLRPRDCKPKCTYRCSATSHKKPCMFFCQKCCATCLCVP 70

Query: 69 NGTYGNKQSCPCYNNWKTQQGGPKCP 95
           G YGNKQSCPCYNNWKTQ+G PKCP
Sbjct: 71 KGVYGNKQSCPCYNNWKTQEGKPKCP 96
[Close]
BLAST of Spo20347.1 vs. UniProtKB/TrEMBL
Match: A0A0V0H010_SOLCH (Uncharacterized protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.800e-33
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 1 

		  

Query: 11 LVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVPNG 70
          L+++ ++L+ FS V+EG N+LRP +C+PKC YRCSATSHKKPCMFFC KCC+ CLCVP G
Sbjct: 13 LLSMFLILLTFSNVVEGYNKLRPRDCKPKCTYRCSATSHKKPCMFFCQKCCATCLCVPKG 72

Query: 71 TYGNKQSCPCYNNWKTQQGGPKCP 95
           YGNKQSCPCYNNWKTQ+G PKCP
Sbjct: 73 VYGNKQSCPCYNNWKTQEGKPKCP 96
[Close]
BLAST of Spo20347.1 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.300e-35
Identity = 60/86 (69.77%), Postives = 75/86 (87.21%), Query Frame = 1 

		  

Query: 9  VVLVTLLVLLVAFSTVIEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVP 68
          ++L+++ ++L+ FS V+EG N+LRP +C+P+C YRCSATSHKKPCMFFC KCC+ CLCVP
Sbjct: 11 LLLISMFLILLTFSNVVEGYNKLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVP 70

Query: 69 NGTYGNKQSCPCYNNWKTQQGGPKCP 95
           G YGNKQSCPCYNNWKTQ+G PKCP
Sbjct: 71 KGVYGNKQSCPCYNNWKTQEGKPKCP 96
[Close]
BLAST of Spo20347.1 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.100e-30
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1 

		  

Query: 30  RLRPGECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVPNGTYGNKQSCPCYNNWKTQQG 89
           RL P +C+PKC YRCS TS+KKPCMFFC KCC+KCLCVP GTYGNKQSCPCYNNWKT++G
Sbjct: 48  RLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRG 107

Query: 90  GPKCP 95
           GPKCP
Sbjct: 108 GPKCP 112
[Close]
BLAST of Spo20347.1 vs. ExPASy Swiss-Prot
Match: GASA5_ARATH (Gibberellin-regulated protein 5 OS=Arabidopsis thaliana GN=GASA5 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.000e-30
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 1 

		  

Query: 12 VTLLVLLVAFSTV--IEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVPN 71
          +TLL LL   + V    G  +L+P +C  KC +RCSATSHKKPCMFFCLKCC KCLCVP 
Sbjct: 13 LTLLFLLSVSNLVQAARGGGKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPP 72

Query: 72 GTYGNKQSCPCYNNWKTQQGGPKCP 95
          GT+GNKQ+CPCYNNWKT++G PKCP
Sbjct: 73 GTFGNKQTCPCYNNWKTKEGRPKCP 97
[Close]
BLAST of Spo20347.1 vs. ExPASy Swiss-Prot
Match: GASAC_ARATH (Gibberellin-regulated protein 12 OS=Arabidopsis thaliana GN=GASA12 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.600e-28
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 

		  

Query: 27  GSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVPNGTYGNKQSCPCYNNWKT 86
           G   L+P EC   C+YRCSATSH+KPC+FFC KCC+KCLCVP+GTYG+K+ CPCYNNW T
Sbjct: 39  GEGSLKPEECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTT 98

Query: 87  QQGGPKCP 95
           ++GGPKCP
Sbjct: 99  KEGGPKCP 106
[Close]
BLAST of Spo20347.1 vs. ExPASy Swiss-Prot
Match: GASAD_ARATH (Gibberellin-regulated protein 13 OS=Arabidopsis thaliana GN=GASA13 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.800e-25
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1 

		  

Query: 35  ECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 94
           EC P+C  RCS T +KKPC+FFC KCC+KCLCVP GTYGNKQ CPCYNNWKT+ GGPKCP
Sbjct: 44  ECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103
[Close]
BLAST of Spo20347.1 vs. TAIR (Arabidopsis)
Match: AT3G02885.1 (GAST1 protein homolog 5)

HSP 1 Score: 131.0 bits (328), Expect = 4.000e-31
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 1 

		  

Query: 12 VTLLVLLVAFSTV--IEGSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVPN 71
          +TLL LL   + V    G  +L+P +C  KC +RCSATSHKKPCMFFCLKCC KCLCVP 
Sbjct: 13 LTLLFLLSVSNLVQAARGGGKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPP 72

Query: 72 GTYGNKQSCPCYNNWKTQQGGPKCP 95
          GT+GNKQ+CPCYNNWKT++G PKCP
Sbjct: 73 GTFGNKQTCPCYNNWKTKEGRPKCP 97
[Close]
BLAST of Spo20347.1 vs. TAIR (Arabidopsis)
Match: AT2G30810.1 (Gibberellin-regulated family protein)

HSP 1 Score: 124.4 bits (311), Expect = 3.700e-29
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 

		  

Query: 27  GSNRLRPGECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVPNGTYGNKQSCPCYNNWKT 86
           G   L+P EC   C+YRCSATSH+KPC+FFC KCC+KCLCVP+GTYG+K+ CPCYNNW T
Sbjct: 39  GEGSLKPEECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTT 98

Query: 87  QQGGPKCP 95
           ++GGPKCP
Sbjct: 99  KEGGPKCP 106
[Close]
BLAST of Spo20347.1 vs. TAIR (Arabidopsis)
Match: AT3G10185.1 (Gibberellin-regulated family protein)

HSP 1 Score: 114.4 bits (285), Expect = 3.800e-26
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1 

		  

Query: 35  ECRPKCKYRCSATSHKKPCMFFCLKCCSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 94
           EC P+C  RCS T +KKPC+FFC KCC+KCLCVP GTYGNKQ CPCYNNWKT+ GGPKCP
Sbjct: 44  ECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103
[Close]
BLAST of Spo20347.1 vs. TAIR (Arabidopsis)
Match: AT1G74670.1 (Gibberellin-regulated family protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.100e-25
Identity = 54/97 (55.67%), Postives = 63/97 (64.95%), Query Frame = 1 

		  

Query: 6   ILGVVLVTLLVLLVAFSTVIE--------GSNRLRPGECRPKCKYRCSATSHKKPCMFFC 65
           I   +L+T+L   V  +   E        G   L+  +C  +C  RCS T + KPCMFFC
Sbjct: 5   ITSFLLLTILFTFVCLTMSKEAEYHPESYGPGSLKSYQCGGQCTRRCSNTKYHKPCMFFC 64

Query: 66  LKCCSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 95
            KCC+KCLCVP GTYGNKQ CPCYNNWKTQQGGPKCP
Sbjct: 65  QKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101
[Close]
BLAST of Spo20347.1 vs. TAIR (Arabidopsis)
Match: AT5G15230.1 (GAST1 protein homolog 4)

HSP 1 Score: 99.0 bits (245), Expect = 1.700e-21
Identity = 51/99 (51.52%), Postives = 62/99 (62.63%), Query Frame = 1 

		  

Query: 9   VVLVTLLVLLVAFSTVI--EGSN------RLRPG-----ECRPKCKYRCSATSHKKPCMF 68
           + L+TL+VL +  + V+   GSN      R  PG     +C  +C  RC  T + K C+ 
Sbjct: 8   IFLLTLIVLFMLQTMVMASSGSNVKWSQKRYGPGSLKRTQCPSECDRRCKKTQYHKACIT 67

Query: 69  FCLKCCSKCLCVPNGTYGNKQSCPCYNNWKTQQGGPKCP 95
           FC KCC KCLCVP G YGNKQ C CYNNWKTQ+GGPKCP
Sbjct: 68  FCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106
The following BLAST results are available for this feature:
BLAST of Spo20347.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902239277|gb|KNA25540.1|1.0e-49100.hypothetical protein SOVF_0059... [more]
gi|595930066|ref|XP_007215190.1|9.5e-3571.2hypothetical protein PRUPE_ppa... [more]
gi|645246115|ref|XP_008229202.1|1.6e-3471.2PREDICTED: protein RSI-1 [Prun... [more]
gi|970060705|ref|XP_015057126.1|1.8e-3370.9PREDICTED: protein RSI-1 [Sola... [more]
gi|703147227|ref|XP_010108998.1|1.8e-3370.5hypothetical protein L484_0271... [more]
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BLAST of Spo20347.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S1B7_SPIOL7.3e-50100.Uncharacterized protein OS=Spi... [more]
M5WRS7_PRUPE6.6e-3571.2Uncharacterized protein OS=Pru... [more]
W9S164_9ROSA1.2e-3370.5Uncharacterized protein OS=Mor... [more]
M1BA38_SOLTU2.8e-3370.9Uncharacterized protein OS=Sol... [more]
A0A0V0H010_SOLCH2.8e-3372.6Uncharacterized protein OS=Sol... [more]
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BLAST of Spo20347.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RSI1_SOLLC3.3e-3569.7Protein RSI-1 OS=Solanum lycop... [more]
GAST1_SOLLC4.1e-3081.5Protein GAST1 OS=Solanum lycop... [more]
GASA5_ARATH7.0e-3067.0Gibberellin-regulated protein ... [more]
GASAC_ARATH6.6e-2870.5Gibberellin-regulated protein ... [more]
GASAD_ARATH6.8e-2576.6Gibberellin-regulated protein ... [more]
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BLAST of Spo20347.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G02885.14.0e-3167.0GAST1 protein homolog 5[more]
AT2G30810.13.7e-2970.5Gibberellin-regulated family p... [more]
AT3G10185.13.8e-2676.6Gibberellin-regulated family p... [more]
AT1G74670.11.1e-2555.6Gibberellin-regulated family p... [more]
AT5G15230.11.7e-2151.5GAST1 protein homolog 4[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003854Gibberellin regulated proteinPFAMPF02704GASAcoord: 35..94
score: 1.1
NoneNo IPR availablePANTHERPTHR23201EXTENSIN, PROLINE-RICH PROTEINcoord: 9..94
score: 3.8
NoneNo IPR availablePANTHERPTHR23201:SF1GIBBERELLIN-REGULATED PROTEIN 12-RELATEDcoord: 9..94
score: 3.8

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009740 gibberellic acid mediated signaling pathway
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0010286 heat acclimation
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009058 biosynthetic process
biological_process GO:0009751 response to salicylic acid
cellular_component GO:0009506 plasmodesma
cellular_component GO:0031012 extracellular matrix
cellular_component GO:0005618 cell wall
cellular_component GO:0044464 cell part
cellular_component GO:0016020 membrane
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo079110.71Barchart | Table
Spo082770.69Barchart | Table
Spo020710.67Barchart | Table