Spo20328 (gene)

Overview
NameSpo20328
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUbiquinol-cytochrome c reductase complex protein
LocationSpoScf_00060 : 559993 .. 565077 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGAGAGTTGAGAATTGGAGTTTTGGAGCCTTCGTATTTCTCACCACTCTGCTTTTAATAGATGGGCCTAAACTTTTAATTTGTTAAACACAATCATCCGCTGAGGCAGGCTTCTCTCTTCTCACATTCCATTTCCCGAATAACCTCCTACAAATTCAATTTGATCCATCTTTTCTTTCTTCAACCCTAAAAAAGGCAGTCAAAGGAGAGAGGAAAAATCACCATGGAAGCAGCTGCAAGGAGAACCGGCGGAGGGCTATGGGAGAGCCTTTACCGTGTCGTCATGCGCCGAAACTCCGTCTATGTCACTTTCGTCATCGCCGGCGCTTTCGTTGGTGAACGGGTGCGTTTTTTTTCTCGATTCATCGTTTCCCTCTTCTTTCCAGATTCGTTGATCTAATGCAATTCTTTTTTTCTTTAATGTATGAACTTTTCAATTGTTACAAATTTGTGTAGGTAGTGTTTGTAATTAGCAATCCAAAATGATGACTTATGAGTTCCTAGATCTAGATGAACCGATTGTATTACGGGTTGAGGATCAATTTTTGTAATTGTGTTATTAAGAATATAACGATGGGTGCTGGTTTATGAACTATTGATGATTGCAATTTACAACTGTCAAAATTAAAGCGTTTGTTGAAAGGAGGAGTTGAGAAATCTCAGAAAAGGGGATTTTTGGGGTAAGCAGTTGACATCTCTTATATTTTTCATTAGATTCCCTAACTATGAAGGGGAACAATGAGGGAAAGTTTAGATTGATCTTAAAATAATGCCGAGGTGAAGAAGTATTCTTATCCTAACCCATCTGTCCAAGATTGCTGAGGTGCTAATCATACATCTTATGTGAATTTCTGCTTAATACTCCCTAATTTTAATATATGCGCGCGCAAGCGATGCGTTTTATGTATGTGCATGTGGGGAGAGGGGTTGTATCATCAGTTCCTCATCTTTTTAAGGGTTTTTGATATTACCTCTGATAATTTGCGTGCTTATCCATGTTCATTTTCCCTTCTATTTGATGGATTTTGTGTTTAGTGGTCATTGGATTTGTTATATTGTGGAGGGTTCTTGCAGTACGCATACGAGAGTGTTGAAACTTAATAAGATACATAACTAAACCGTGCAACTTCTGGTTGTAGTGTTTTCTTGTTACAACAACAACAACAAAGCCTTAGTCCCAAAATGATTTGGGGTGTAGTGTTTTCTTGTTGAACCTGGAAAATGTATAGATGTACTATCTTTCTGTTTAATGGATCAATGTTGCAGATTTACTCATTGTTATCTCTCCATCTCTGTTATACTTATTTATCACAGCTAAAATAAGCTATTTCTGCAGATAAATCATGTAATGCCTCACAATATCACCGTAGTATTGTTGCAGCTAATATGTTTGAACATAATCACTTTGATTCACCTCCCAGGAATGCAAGTCTTCATTTTTTATTTCTTGGTCTAAGGTTTACTGTGCTTTTGCTGACTTCTTGAAACTCTATCCCATGATAGATTCTCACCAAGTGTCAGTGTCATTGTTGGTGACTAAATGTTTATTTACTGTAAGTATTTGTGATTAAGCTTCATTGTATTGCAGGCTGTGGACTACGGAGTTCATAAACTGTGGGAGCACAACAACAAGGGGGTACGTAGTTAATCTCATGTTTATTTGTCAAATGATACATCCTTGTTACTAATTAATTTAGATTCTTCATGTACGTTTTACTACAAAAATTGATGTAACTTAGTCGGGAGTAAATTAGATGTACCGCAAACATTGACGTAAATGTATTAGTTGGGAATTACATTAGAGTATTAGACATGGTGTATGTGTCTTAGTTTAAAAAAGCGCCCCCAAGGCGCGCCTAGGCGCAAGGCTCACCTAGGCTCAGCCTTGGAGCCTTGAGCTCTCCAGACTCACTGATGTCAACCAGGCGCGCACCTTCGTGCGCCTTTGTGCTCCTTAGGTAAGACGCAAGGCGCAGCGTCTTGTGCGCCTTCAGTCTTCAGGCGCGGTAGGATGACGTTGATCTTTTATTTACATTTTTTTTCTTTTTTAATGATATAAACACACCCCATGTGACCTATCAACGGTCACATCTCTACAACCTTAGCTTTTTGGGTAGTGGAAGTAGCATAATATGAGTTAATTTTCATATTCCCACCTTGTAATTACCATGGGAGGTTCTAATTCTGGCACTCCATCGACGGGATCACGCGATGCTTATGAACCGGCAAGAAAATATGGCACTCCAATAGAAATATGTTGTTTTGAGTATAAATTGTGTTAATTTTTTTCTTTACCGAATTTTAAGGTTTATTAGAAAATTATGTGCGCCTTGTATCCCAAAGGCGCGTGCCTGAGCCTTGTGCCTTGCACCTAGGCTCCACGACCCTTGTGCGCCATAGTGCGCCTTGCACCTTTTCAAACTAAGGTATGTGTACCGTATTAGTTGGGAAATAATTAAATGTTACTGCAAACATTGACATACCAATAAGCTAGGAAATATATTAGATGAATATGTGAGATGCTTTAACATTCGTTCTACTCCTACTGCTCTGTCCTTTGTATTAGTCAATGGGAAAGAAAAGCAACTAGGTTTTACCTGGCTGATGAAGAAGGTACTGTTGTATGACTACTAAGTTATGCCTCCAAGTCTCTGTACCATGACGCTTATAATTTCCTCGACTGTCCATGCCTTTGATTTCTTCGATCCCATTCCTAGTACATACTTTGCAAAAGGTTATTTGTTCCCTTTCTCTCTAGCTTCTGCTGCTTCTTTGGTGTCCTGTGATCAACTAACAGTCTTGAAGAATGATCCAGATGGGTGATATAACTCATATAAGTACTTTGTATCGGAGATTTTTTCAAATTTTGGACTATTAGTAGTTGGCACTTAAGTGGGATGGGGAAAGGTGGAAGTTAATGGAAACACGTTCCTTGCCTAGTAAATTGCAGAGAGTGTCTGATGTAGCTTCTCCTGTATATGCTCTAAAGACCCATATGAGATTTTATCTTGTGAGTTTGAGAAAAAGGAGGATGGTTGACTGTGGTAGGAAGGATTTTGTTCGTAGGGTGCAGGTTGACCTTTGTATGATTGTGTTGTTTGTGGTGACATATTAGTCACGTAGTTAGTTATGCAGGGGCTGTTGTGACCCTGGTTCCATCATAAATGGGCTAAAGTAGATGTAACGTGGTGGTAGTGATACATGGGAGTTTGGAAGGGTTGAGTATTCCTTGTGAACAATTACAAGGTGTTTGGATAGACAAATATGGAGGGAAAGGAAGGGAAGAGAAAGTGAGGGATTAATCTTCCCTTGTTTGGATATGACCTATGGGAGAGGGAAGGGATGGGAATTGGACGTATCCATTTTCCCTTTTTAATAAACCAAATCATTCTAATGTTGGAAAGATTTGGAAGGAAAATGTAAGCTCCCTGTTCCCTTCCCTTGTTTGAAAGGAAGAGGAATCAAAACTATGCATTTAACTCATGAAATATGGACTTTCTGATCACTTCTTCCCTTCATATTTGTATGTGAAGCTCTATAAATAAGGACTACTTGCAATGAAAATTAGTTTATTGCCTTTTAAGTGATGGATAATGTTGCTAGCTTTAACAAAGTGAGTAGGTGCTAGTGTGGATTTTATGACATTTATCTGTTTAGAGAGCAGAATTGTCCTGTTGCATCAAGAGTATCTGGCATTAGCTCATATTATAATCAGTTGAAGGAGGTGGTGATAGCTGCTGAAGTATATTTGTTAAAGTTTGAACTTCTTTCAGTTCTCGGCTTTGAACTGAAATGTTTTTCTTTTACGTGAAGGCTAGTAGGCCAGTTTGAAGAATATATTTATGTGTCACTGTAGAAACATCCGCTGCACCACAGAAACTGATGCTACTCCAGCGCCAATTTCCCGGCCTCAAAACCCAAATCTGGTCAGACACTTGTTTACATTGGGCTAAACTATGTCGGACCCTTAAAATCAGCCCAATCGCCGCCCCACCAAATCGCCCATTATTACGTTACTCTCATGGTCTCATGAGTATTTACAGTAAATTTATATAGCCTTTCCTAAATAAACCAGGGAGGCTGCGTCTTCGGGGACATTGATTTAGCTGCACTTGATCCCGCAACTGTGGGAAAGAGTGGTTGTCAAAGACTCAAAGAACTTCAGCAGACTTCCTGGTTCCTGGTTCCTGGTTCCTGGTCACTGATCTTGCTCACGTTTCGCTTTCTGAGTCGAGATTGGCAGCCCATGATACCCTCCATGTCCGTCAATGCTGTGACCATTCCCAGCGATCCATACAACCACCCCTGACAAGAGGCTGGTTATATTTAATCTTTGCAAGATGCTGAAGTATATTTTGTAAAAGTTTGAAACTTCATATAGTTCTCGGCTTTGAACAGAAATGTTTTTCTTTTACATGAAGACTAGTAGGCTAGTTTAAAATATATGTTTTTGTGGGACTTGTATACCTAGAGTCTCTCTGTGCCATAGGTCAATGCATAACCGCATAATTTTTCTTTGGGTTTCATGATAATTAAGTGCAAATTGCTCCTTTCTTTTTAAGAGAGAAAGAAGTCAATTTGCTTGAAGTTTTTCCCCATTTATTGTTGATCTTTTGTTTCCCTGTACTTGATTTTTAATGTCATCGCTCATTATGCAGAAACGATATGAAGACATCCCTGTGCTTGGTCAACGACAATCAGAATAACTGATTCTTTCATTTCTCTGGTGTCACCTTTTGGAAGTTTGTTGCATCTGGAATTAAGATGGGATATTGAAAAGCCAGTTGGCTGTATTGATTTTGTAATAATGGATGCAGTTTCAATTTTGATTTGTTTTTTTTACCAAACAAAGCTAGTCGATGGTTCGGATTGCAACTTAATATAACAGGAAATTCGAATATTTTTATGTACTAGCATGTACTTCTAGTGATGCTGCAGAACTCTGTTCCAAACTTACTGATTAGATGATTGTTACCCTCTTCTTTGGATATTGGTTTTATGTAAGATCTCATAAGATAATTCAACGAATCGGAGACACATGTCCAATGCGTGTCCGATATCCCATGTCCTTTTTATTATGAGTT

mRNA sequence

CATGAGAGTTGAGAATTGGAGTTTTGGAGCCTTCGTATTTCTCACCACTCTGCTTTTAATAGATGGGCCTAAACTTTTAATTTGTTAAACACAATCATCCGCTGAGGCAGGCTTCTCTCTTCTCACATTCCATTTCCCGAATAACCTCCTACAAATTCAATTTGATCCATCTTTTCTTTCTTCAACCCTAAAAAAGGCAGTCAAAGGAGAGAGGAAAAATCACCATGGAAGCAGCTGCAAGGAGAACCGGCGGAGGGCTATGGGAGAGCCTTTACCGTGTCGTCATGCGCCGAAACTCCGTCTATGTCACTTTCGTCATCGCCGGCGCTTTCGTTGGTGAACGGGCTGTGGACTACGGAGTTCATAAACTGTGGGAGCACAACAACAAGGGGAAACGATATGAAGACATCCCTGTGCTTGGTCAACGACAATCAGAATAACTGATTCTTTCATTTCTCTGGTGTCACCTTTTGGAAGTTTGTTGCATCTGGAATTAAGATGGGATATTGAAAAGCCAGTTGGCTGTATTGATTTTGTAATAATGGATGCAGTTTCAATTTTGATTTGTTTTTTTTACCAAACAAAGCTAGTCGATGGTTCGGATTGCAACTTAATATAACAGGAAATTCGAATATTTTTATGTACTAGCATGTACTTCTAGTGATGCTGCAGAACTCTGTTCCAAACTTACTGATTAGATGATTGTTACCCTCTTCTTTGGATATTGGTTTTATGTAAGATCTCATAAGATAATTCAACGAATCGGAGACACATGTCCAATGCGTGTCCGATATCCCATGTCCTTTTTATTATGAGTT

Coding sequence (CDS)

ATGGAAGCAGCTGCAAGGAGAACCGGCGGAGGGCTATGGGAGAGCCTTTACCGTGTCGTCATGCGCCGAAACTCCGTCTATGTCACTTTCGTCATCGCCGGCGCTTTCGTTGGTGAACGGGCTGTGGACTACGGAGTTCATAAACTGTGGGAGCACAACAACAAGGGGAAACGATATGAAGACATCCCTGTGCTTGGTCAACGACAATCAGAATAA

Protein sequence

MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYEDIPVLGQRQSE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20328.1Spo20328.1mRNA


Homology
[Close]
BLAST of Spo20328.1 vs. NCBI nr
Match: gi|902235642|gb|KNA24022.1| (hypothetical protein SOVF_019740 [Spinacia oleracea])

HSP 1 Score: 148.7 bits (374), Expect = 3.900e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE
Sbjct: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60

Query: 61 DIPVLGQRQSE 72
          DIPVLGQRQSE
Sbjct: 61 DIPVLGQRQSE 71
[Close]
BLAST of Spo20328.1 vs. NCBI nr
Match: gi|731345076|ref|XP_010683734.1| (PREDICTED: cytochrome b-c1 complex subunit 9 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 134.0 bits (336), Expect = 1.000e-28
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          MEAAARR+GGGLWE +YRVVMRRNSVYVTFVIAGAFVGER VDYGVHKLWE+NN+GKRYE
Sbjct: 1  MEAAARRSGGGLWEGMYRVVMRRNSVYVTFVIAGAFVGERVVDYGVHKLWEYNNQGKRYE 60

Query: 61 DIPVLGQRQSE 72
          DI VLGQR SE
Sbjct: 61 DISVLGQRPSE 71
[Close]
BLAST of Spo20328.1 vs. NCBI nr
Match: gi|703103828|ref|XP_010097831.1| (Cytochrome b-c1 complex subunit 9 [Morus notabilis])

HSP 1 Score: 132.5 bits (332), Expect = 2.900e-28
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          M++ ARRTGGGL+E LYRV+MRRNSVYVTF+IAGAF+GERAVDYGVHKLWE+NN GKRYE
Sbjct: 1  MDSVARRTGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 60

Query: 61 DIPVLGQRQSE 72
          DIPVLGQRQSE
Sbjct: 61 DIPVLGQRQSE 71
[Close]
BLAST of Spo20328.1 vs. NCBI nr
Match: gi|1009161177|ref|XP_015898756.1| (PREDICTED: cytochrome b-c1 complex subunit 9 [Ziziphus jujuba])

HSP 1 Score: 131.7 bits (330), Expect = 5.000e-28
Identity = 60/71 (84.51%), Postives = 69/71 (97.18%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          M++AARR+GGGL+E LYRV+MRRNSVYVTF+IAGAF+GERAVDYGVHK+WE+NN GKRYE
Sbjct: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKIWEYNNVGKRYE 60

Query: 61 DIPVLGQRQSE 72
          DIPVLGQRQSE
Sbjct: 61 DIPVLGQRQSE 71
[Close]
BLAST of Spo20328.1 vs. NCBI nr
Match: gi|1012190410|ref|XP_015970488.1| (PREDICTED: cytochrome b-c1 complex subunit 9 [Arachis duranensis])

HSP 1 Score: 131.0 bits (328), Expect = 8.500e-28
Identity = 61/71 (85.92%), Postives = 69/71 (97.18%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          ME+A+RR+GGG++E+LY+V+MRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNN GKRYE
Sbjct: 1  MESASRRSGGGIFEALYKVLMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNVGKRYE 60

Query: 61 DIPVLGQRQSE 72
          DI VLGQRQSE
Sbjct: 61 DISVLGQRQSE 71
[Close]
BLAST of Spo20328.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYR7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_019740 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.700e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE
Sbjct: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60

Query: 61 DIPVLGQRQSE 72
          DIPVLGQRQSE
Sbjct: 61 DIPVLGQRQSE 71
[Close]
BLAST of Spo20328.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZX2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g159500 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.000e-29
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          MEAAARR+GGGLWE +YRVVMRRNSVYVTFVIAGAFVGER VDYGVHKLWE+NN+GKRYE
Sbjct: 1  MEAAARRSGGGLWEGMYRVVMRRNSVYVTFVIAGAFVGERVVDYGVHKLWEYNNQGKRYE 60

Query: 61 DIPVLGQRQSE 72
          DI VLGQR SE
Sbjct: 61 DISVLGQRPSE 71
[Close]
BLAST of Spo20328.1 vs. UniProtKB/TrEMBL
Match: W9RG51_9ROSA (Cytochrome b-c1 complex subunit 9 OS=Morus notabilis GN=L484_009137 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.000e-28
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          M++ ARRTGGGL+E LYRV+MRRNSVYVTF+IAGAF+GERAVDYGVHKLWE+NN GKRYE
Sbjct: 1  MDSVARRTGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 60

Query: 61 DIPVLGQRQSE 72
          DIPVLGQRQSE
Sbjct: 61 DIPVLGQRQSE 71
[Close]
BLAST of Spo20328.1 vs. UniProtKB/TrEMBL
Match: A0A059A3E3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02043 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.700e-28
Identity = 60/71 (84.51%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          ME+AARR+GGGL E  YRV+MRRNSVYVTF++AGAF+GERAVDYGVHKLWE+NN GKRYE
Sbjct: 1  MESAARRSGGGLLEGFYRVIMRRNSVYVTFIVAGAFLGERAVDYGVHKLWEYNNVGKRYE 60

Query: 61 DIPVLGQRQSE 72
          DIPVLGQRQSE
Sbjct: 61 DIPVLGQRQSE 71
[Close]
BLAST of Spo20328.1 vs. UniProtKB/TrEMBL
Match: K7MZ88_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.000e-27
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          MEA +RR GGG++ESLY+VVMRRNSVYVTFVIAGAF+GERAVDYGVHKLWE NN GKRYE
Sbjct: 1  MEAVSRRRGGGIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEANNVGKRYE 60

Query: 61 DIPVLGQRQSE 72
          DIPVLGQRQSE
Sbjct: 61 DIPVLGQRQSE 71
[Close]
BLAST of Spo20328.1 vs. ExPASy Swiss-Prot
Match: QCR9_SOLTU (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.300e-23
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          ME+AARR+GGG+ E  YR+VMRR  VYVTFVIAGA +GERAVDYGV  LWE NN GKRYE
Sbjct: 1  MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVGKRYE 60

Query: 61 DIPVLGQR 69
          DI VLGQR
Sbjct: 61 DISVLGQR 68
[Close]
BLAST of Spo20328.1 vs. TAIR (Arabidopsis)
Match: AT3G52730.1 (ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein)

HSP 1 Score: 110.9 bits (276), Expect = 3.200e-25
Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 1 

		  

Query: 1  MEAAARRTGGGLWESLYRVVMRRNSVYVTFVIAGAFVGERAVDYGVHKLWEHNNKGKRYE 60
          ME AARR   G +E  Y+++MRRNSVYVTF+IAGAF GERAVDYGVHKLWE NN GKRYE
Sbjct: 1  MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVGKRYE 60

Query: 61 DIPVLGQRQSE 72
          DI VLGQR  E
Sbjct: 61 DISVLGQRPVE 71
The following BLAST results are available for this feature:
BLAST of Spo20328.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902235642|gb|KNA24022.1|3.9e-33100.hypothetical protein SOVF_0197... [more]
gi|731345076|ref|XP_010683734.1|1.0e-2888.7PREDICTED: cytochrome b-c1 com... [more]
gi|703103828|ref|XP_010097831.1|2.9e-2885.9Cytochrome b-c1 complex subuni... [more]
gi|1009161177|ref|XP_015898756.1|5.0e-2884.5PREDICTED: cytochrome b-c1 com... [more]
gi|1012190410|ref|XP_015970488.1|8.5e-2885.9PREDICTED: cytochrome b-c1 com... [more]
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BLAST of Spo20328.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RYR7_SPIOL2.7e-33100.Uncharacterized protein OS=Spi... [more]
A0A0J8BZX2_BETVU7.0e-2988.7Uncharacterized protein OS=Bet... [more]
W9RG51_9ROSA2.0e-2885.9Cytochrome b-c1 complex subuni... [more]
A0A059A3E3_EUCGR7.7e-2884.5Uncharacterized protein OS=Euc... [more]
K7MZ88_SOYBN1.0e-2787.3Uncharacterized protein OS=Gly... [more]
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BLAST of Spo20328.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR9_SOLTU6.3e-2376.4Cytochrome b-c1 complex subuni... [more]
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BLAST of Spo20328.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G52730.13.2e-2574.6ubiquinol-cytochrome C reducta... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008027Cytochrome b-c1 complex subunit 9GENE3D1.20.5.260coord: 11..63
score: 3.0
IPR008027Cytochrome b-c1 complex subunit 9PANTHERPTHR12980UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT Xcoord: 4..71
score: 5.7
IPR008027Cytochrome b-c1 complex subunit 9PFAMPF05365UCR_UQCRX_QCR9coord: 15..63
score: 1.4
IPR008027Cytochrome b-c1 complex subunit 9unknownSSF81514Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 12..63
score: 1.83
NoneNo IPR availablePANTHERPTHR12980:SF0CYTOCHROME B-C1 COMPLEX SUBUNIT 9coord: 4..71
score: 5.7

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0006412 translation
cellular_component GO:0005750 mitochondrial respiratory chain complex III
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005730 nucleolus
cellular_component GO:0005743 mitochondrial inner membrane
molecular_function GO:0003735 structural constituent of ribosome
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo012620.68Barchart | Table
Spo209350.67Barchart | Table
Spo253690.67Barchart | Table