Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGCACACAGAGCAGCAATGATGTCCGGTTCCTCAAATGTTGTCTTTATGTCAAGTATTCTGGGTCAGGATGGGACAAACCCGGGTCACAAGTGTGATTGGAAATGTCAAAACGAGCACGTCTGTGGAAATATGTTCCGATGCAGGCTTACCGGACAGACCCATATTTGTGACAAAAACTGTAACCAGCGAATTCTGTACGGTAATCACAACTCACTGTGCAGAGTCAGTGGACAGATTTTCCCACTTACACCTACGGAGCAGCAAGCAACTAGAGGTGTTCGTAAGAAGTTTGAAGCCGAGGCTTCCTCTTCCGAGACCTGTTCTTTCAAGCGTCGGCGTGATTCAAATTTACATCCTTCGCCTTTCGAGAGATCATTTTCTGCTGTCAGCCCTATCTGCAGTCAAGTTGGAGATGGAATGCTGAGATATGGCTATTTATTGTGTTCTATGAAGGTGTCTTAA ATGGAGGCACACAGAGCAGCAATGATGTCCGGTTCCTCAAATGTTGTCTTTATGTCAAGTATTCTGGGTCAGGATGGGACAAACCCGGGTCACAAGTGTGATTGGAAATGTCAAAACGAGCACGTCTGTGGAAATATGTTCCGATGCAGGCTTACCGGACAGACCCATATTTGTGACAAAAACTGTAACCAGCGAATTCTGTACGGTAATCACAACTCACTGTGCAGAGTCAGTGGACAGATTTTCCCACTTACACCTACGGAGCAGCAAGCAACTAGAGGTGTTCGTAAGAAGTTTGAAGCCGAGGCTTCCTCTTCCGAGACCTGTTCTTTCAAGCGTCGGCGTGATTCAAATTTACATCCTTCGCCTTTCGAGAGATCATTTTCTGCTGTCAGCCCTATCTGCAGTCAAGTTGGAGATGGAATGCTGAGATATGGCTATTTATTGTGTTCTATGAAGGTGTCTTAA ATGGAGGCACACAGAGCAGCAATGATGTCCGGTTCCTCAAATGTTGTCTTTATGTCAAGTATTCTGGGTCAGGATGGGACAAACCCGGGTCACAAGTGTGATTGGAAATGTCAAAACGAGCACGTCTGTGGAAATATGTTCCGATGCAGGCTTACCGGACAGACCCATATTTGTGACAAAAACTGTAACCAGCGAATTCTGTACGGTAATCACAACTCACTGTGCAGAGTCAGTGGACAGATTTTCCCACTTACACCTACGGAGCAGCAAGCAACTAGAGGTGTTCGTAAGAAGTTTGAAGCCGAGGCTTCCTCTTCCGAGACCTGTTCTTTCAAGCGTCGGCGTGATTCAAATTTACATCCTTCGCCTTTCGAGAGATCATTTTCTGCTGTCAGCCCTATCTGCAGTCAAGTTGGAGATGGAATGCTGAGATATGGCTATTTATTGTGTTCTATGAAGGTGTCTTAA MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDKNCNQRILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLHPSPFERSFSAVSPICSQVGDGMLRYGYLLCSMKVS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20326.1 vs. NCBI nr
Match: gi|902146699|gb|KNA05092.1| (hypothetical protein SOVF_193580 [Spinacia oleracea]) HSP 1 Score: 327.4 bits (838), Expect = 1.300e-86 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1
BLAST of Spo20326.1 vs. NCBI nr
Match: gi|902233960|gb|KNA23274.1| (hypothetical protein SOVF_026460 [Spinacia oleracea]) HSP 1 Score: 297.7 bits (761), Expect = 1.100e-77 Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1
BLAST of Spo20326.1 vs. NCBI nr
Match: gi|870865374|gb|KMT16430.1| (hypothetical protein BVRB_3g050560 isoform A [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 285.8 bits (730), Expect = 4.500e-74 Identity = 133/148 (89.86%), Postives = 139/148 (93.92%), Query Frame = 1
BLAST of Spo20326.1 vs. NCBI nr
Match: gi|731321298|ref|XP_010671276.1| (PREDICTED: uncharacterized protein LOC104888109 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 280.4 bits (716), Expect = 1.900e-72 Identity = 130/142 (91.55%), Postives = 136/142 (95.77%), Query Frame = 1
BLAST of Spo20326.1 vs. NCBI nr
Match: gi|870865375|gb|KMT16431.1| (hypothetical protein BVRB_3g050560 isoform B [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 266.9 bits (681), Expect = 2.200e-68 Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 1
BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCU7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_193580 PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 9.400e-87 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1
BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWI5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_026460 PE=4 SV=1) HSP 1 Score: 297.7 bits (761), Expect = 8.000e-78 Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1
BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRM5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050560 PE=4 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 3.100e-74 Identity = 133/148 (89.86%), Postives = 139/148 (93.92%), Query Frame = 1
BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FKI9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050560 PE=4 SV=1) HSP 1 Score: 266.9 bits (681), Expect = 1.500e-68 Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 1
BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Match: K4Q0G5_BETVU (Uncharacterized protein OS=Beta vulgaris PE=4 SV=2) HSP 1 Score: 240.0 bits (611), Expect = 2.000e-60 Identity = 110/122 (90.16%), Postives = 116/122 (95.08%), Query Frame = 1
BLAST of Spo20326.1 vs. TAIR (Arabidopsis)
Match: AT5G24610.1 (unknown protein) HSP 1 Score: 197.6 bits (501), Expect = 5.700e-51 Identity = 92/140 (65.71%), Postives = 117/140 (83.57%), Query Frame = 1
BLAST of Spo20326.1 vs. TAIR (Arabidopsis)
Match: AT3G49550.1 (unknown protein) HSP 1 Score: 194.1 bits (492), Expect = 6.300e-50 Identity = 89/141 (63.12%), Postives = 115/141 (81.56%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20326.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20326.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo20326.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|