Spo20284 (gene)

Overview
NameSpo20284
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L27
LocationSpoScf_00665 : 256998 .. 258844 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGTTTCTGAAACCAGGGAAGGCGGTGATCGTGCTGCAAGGGCGTTACGCAGGGCGGAAGGCGGTGATTGTTCGCAACTTCGACGAAGGAAACCGTGAGCGACAATACGGACACTGCCTGGTGGCCGGCATCAACAAGTACCCCAAGAAGGTGATCAGAAAGGACTCAGCCAAGAAGCAGGCCAAGAAATCCCGCGTGAAATGCTTCGTCAAGGTCGTCAATTACAACCACATCATGCCTACTCGATACACTCTTGACGTTGATCTTAAGGATGTCGTCACTACTGATGTATTGACATCCAAGGACAAGAAGGTTACTGCTGCCAAGGAGACTAAGGCCAGGTTTGAGGAGAGGTTCAAGACTGGCAAGAACCGATGGTTCTTCTCTAAACTCAGGTTTTAAGTGACTTTTTTTTAAAGATTTACCAAGTAGAAGAAGAGAAGTTTTGTTACGTTTATGGTTTATTTTATTTTGAACCAAGTTTATGCTTTCCGGGTCGGATCTAATTTTGTTGATGGTGATTTTGCTGGAATTCTATATATTATGCTATGAACCCAATTTCGAATTTTTATGTTGTGATTTGTTATGTTTGTAACTTATCTATGTCTTGTTATTAGAATTTTATTAGGGTTGATTGCCTTGAGATATATTGTGTCCCATGATGTTAATCTATCCTTGACAAATTTTATAATGTCGCTAGTTTTAGGTGGTTTTCATGTGTAGTCATACCGCTAAATGTCGAAGTTTATTGCACTTAATTGTTTCGAAAGACTTGTTTGAGAAATTGATTCCCTTGTGTATACTCCTAATGTATTGGGTATTGGCAACTAAGCATAGCAAGAAAAAGAATGTGAACCAATGCAAGGATAAATAATTAGTAGGAAGCATTTGGTTGTTATTGAACTATCCATATCTAAGTGAAACAACTACTGTGAATTTTCAGATGTTGGTGTGCCGTATTTTGACATCAATAGAATTTATTATTGCTTAGTTTGTTATTATCTGATTGCCAGCAGCTTGAATTTGGTGGTAATTAGGACACGGTTGTGACTTGTGAGATCATGACCGGCCTGGCTACTGATGTCTATTATTTGCAAAGAGTAACTGGGTTTTGATGTAGACAAGAGATAAAAGCTCGCTTGGCGCATTGCTTTTACTTTAATGTTTTGGTGTATGGTGTAAGTTACTAAGTTAATAAAACAGAGTTCTTCTCTGACAACTCAACACTGGCTGCTAATAACTGGATAGTTGTTATATTTAGCAACTCTATATGCTATGAGCAGGGAGGTTTTTTTGAAGAATTTCTTTTACTGAAATTCAGCAGAAATGGGGAACTGAATTACTGGGTAGACCCCGACAGTGTATTTTTATTAAGTATCTCCAAATTTTTAAAAATTTTAAAATTTTGTATGGGGAACAGAGTTTGAGTCGTATATGATTTTAAGCACTGAGATTTCTGTCCTTGTTCCAATTGCAATGGGGGATCAAGTTATATTTAAAATGACCTTGTTGTTGATATCGAACACCATTTTAATACAATCTCTTTCTTGTTATCATGTTTGAACTCTGTAGAATATGAATAATATGTAACATGTGATCTGGTAAAAGAATCTGCTCTGAGTTTGAAATAAACATTGTTCTTAATTGAGGCCTAAATTTCCATATTTTGCTTCTACGGTTCTAAGGAGATGTTTCCTCAGTATTATTGAATCCAATTTGTTAGTAAGGCATCCTATTGTAACATGTAACAAATGCTTCGAAGAAGACTGATCATCTATATTAACTTGAAATTTATATTCAGTGCTAGTACATTAGAAGATGAGTTGGCTGTGTTCTCATGA

mRNA sequence

ATGGTGAAGTTTCTGAAACCAGGGAAGGCGGTGATCGTGCTGCAAGGGCGTTACGCAGGGCGGAAGGCGGTGATTGTTCGCAACTTCGACGAAGGAAACCGTGAGCGACAATACGGACACTGCCTGGTGGCCGGCATCAACAAGTACCCCAAGAAGGTGATCAGAAAGGACTCAGCCAAGAAGCAGGCCAAGAAATCCCGCGTGAAATGCTTCGTCAAGGTCGTCAATTACAACCACATCATGCCTACTCGATACACTCTTGACGTTGATCTTAAGGATGTCGTCACTACTGATGTATTGACATCCAAGGACAAGAAGGTTACTGCTGCCAAGGAGACTAAGGCCAGGTTTGAGGAGAGGTTCAAGACTGGCAAGAACCGATGGTTCTTCTCTAAACTCAGTGCTAGTACATTAGAAGATGAGTTGGCTGTGTTCTCATGA

Coding sequence (CDS)

ATGGTGAAGTTTCTGAAACCAGGGAAGGCGGTGATCGTGCTGCAAGGGCGTTACGCAGGGCGGAAGGCGGTGATTGTTCGCAACTTCGACGAAGGAAACCGTGAGCGACAATACGGACACTGCCTGGTGGCCGGCATCAACAAGTACCCCAAGAAGGTGATCAGAAAGGACTCAGCCAAGAAGCAGGCCAAGAAATCCCGCGTGAAATGCTTCGTCAAGGTCGTCAATTACAACCACATCATGCCTACTCGATACACTCTTGACGTTGATCTTAAGGATGTCGTCACTACTGATGTATTGACATCCAAGGACAAGAAGGTTACTGCTGCCAAGGAGACTAAGGCCAGGTTTGAGGAGAGGTTCAAGACTGGCAAGAACCGATGGTTCTTCTCTAAACTCAGTGCTAGTACATTAGAAGATGAGTTGGCTGTGTTCTCATGA

Protein sequence

MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAKKQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEERFKTGKNRWFFSKLSASTLEDELAVFS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20284.1Spo20284.1mRNA


Homology
[Close]
BLAST of Spo20284.1 vs. NCBI nr
Match: gi|902218211|gb|KNA17970.1| (hypothetical protein SOVF_075000 [Spinacia oleracea])

HSP 1 Score: 262.3 bits (669), Expect = 5.000e-67
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133
[Close]
BLAST of Spo20284.1 vs. NCBI nr
Match: gi|902155875|gb|KNA05959.1| (hypothetical protein SOVF_185480 [Spinacia oleracea])

HSP 1 Score: 259.2 bits (661), Expect = 4.200e-66
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTS+DKKVTAAKE KARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSRDKKVTAAKEAKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133
[Close]
BLAST of Spo20284.1 vs. NCBI nr
Match: gi|731377251|ref|XP_010667820.1| (PREDICTED: 60S ribosomal protein L27-3-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 248.8 bits (634), Expect = 5.700e-63
Identity = 125/133 (93.98%), Postives = 128/133 (96.24%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEG R+R YGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKD+V+ D L SKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDIVSADALQSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133
[Close]
BLAST of Spo20284.1 vs. NCBI nr
Match: gi|731371954|ref|XP_010666201.1| (PREDICTED: 60S ribosomal protein L27-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 241.1 bits (614), Expect = 1.200e-60
Identity = 121/133 (90.98%), Postives = 127/133 (95.49%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVK +KPGKAVI+LQGRYAGRKAVIVRNFDEG R+R YGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNY HIMPTRYTLDVDLKDVV++DVL SKDKKVTAAKETK RFE+R
Sbjct: 61  KQAKKSRVKCFVKVVNYTHIMPTRYTLDVDLKDVVSSDVLQSKDKKVTAAKETKTRFEDR 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133
[Close]
BLAST of Spo20284.1 vs. NCBI nr
Match: gi|848885474|ref|XP_012842987.1| (PREDICTED: 60S ribosomal protein L27 [Erythranthe guttata])

HSP 1 Score: 237.3 bits (604), Expect = 1.700e-59
Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKP KAVI+LQGRYAGRKAVIVR FD+G R+R YGHCLVAGI KYP+KVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIILQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGITKYPRKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVK+VNYNHIMPTRYTLDVDLKDVVT D L SKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKLVNYNHIMPTRYTLDVDLKDVVTPDCLQSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133
[Close]
BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RER7_SPIOL (60S ribosomal protein L27 OS=Spinacia oleracea GN=SOVF_075000 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.500e-67
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133
[Close]
BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFA8_SPIOL (60S ribosomal protein L27 OS=Spinacia oleracea GN=SOVF_185480 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.000e-66
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTS+DKKVTAAKE KARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSRDKKVTAAKEAKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133
[Close]
BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5D6_BETVU (60S ribosomal protein L27 OS=Beta vulgaris subsp. vulgaris GN=BVRB_012510 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.000e-63
Identity = 125/133 (93.98%), Postives = 128/133 (96.24%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEG R+R YGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKD+V+ D L SKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDIVSADALQSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133
[Close]
BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DZF1_BETVU (60S ribosomal protein L27 OS=Beta vulgaris subsp. vulgaris GN=BVRB_000570 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.300e-61
Identity = 121/133 (90.98%), Postives = 127/133 (95.49%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVK +KPGKAVI+LQGRYAGRKAVIVRNFDEG R+R YGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNY HIMPTRYTLDVDLKDVV++DVL SKDKKVTAAKETK RFE+R
Sbjct: 61  KQAKKSRVKCFVKVVNYTHIMPTRYTLDVDLKDVVSSDVLQSKDKKVTAAKETKTRFEDR 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133
[Close]
BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Match: A0A022QVH8_ERYGU (60S ribosomal protein L27 OS=Erythranthe guttata GN=MIMGU_mgv1a016082mg PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.200e-59
Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKP KAVI+LQGRYAGRKAVIVR FD+G R+R YGHCLVAGI KYP+KVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIILQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGITKYPRKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVK+VNYNHIMPTRYTLDVDLKDVVT D L SKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKLVNYNHIMPTRYTLDVDLKDVVTPDCLQSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133
[Close]
BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 214.9 bits (546), Expect = 5.700e-55
Identity = 104/133 (78.20%), Postives = 118/133 (88.72%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLK  KAVI+LQGRYAG+KAVI+++FD+GNR+R YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF+K+VNY H+MPTRYTLDVDLK+V T D L SKDKKV A KE KA+ EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133
[Close]
BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.700e-54
Identity = 102/133 (76.69%), Postives = 120/133 (90.23%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVK +KPGKAVI+LQGRY G+KAVIV++FD+G  E++YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF KV+NY H+MPTRYTLD+DLK+VV+ D ++SKDKKVTA KE KA+FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133
[Close]
BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 213.0 bits (541), Expect = 2.200e-54
Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLK  KAVI+LQGRYAG+KAVI+++FD+G  +R+YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF+K+VNY H+MPTRYTLDVDLK+V T D L SKDKKVTA KE KA+ EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133
[Close]
BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.900e-54
Identity = 106/133 (79.70%), Postives = 116/133 (87.22%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKP KAVI+LQGRYAG+KAVIV+ FD+G RE+ YGHCLVAGI K+P KVI+KDSAK
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVK FVK+VNY H+MPTRYTLDVDLKD V  DVL SKDKKVTA KETK   EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133
[Close]
BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.300e-51
Identity = 106/137 (77.37%), Postives = 117/137 (85.40%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           M KFLKP KAVI+LQG+YAGRKAVIVR FDEG R+R YGHCLVAGI++YPKKVIRKDSAK
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDL----KDVVTTDVLTSKDKKVTAAKETKAR 120
           K  KKSRVK F+K+VNYNHIMPTRYTLD DL    KDVV  DVL ++DKKVT A+ TKAR
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVT-ARRTKAR 120

Query: 121 FEERFKTGKNRWFFSKL 134
             ERFKTGKNRWFF+KL
Sbjct: 121 LAERFKTGKNRWFFTKL 136
[Close]
BLAST of Spo20284.1 vs. TAIR (Arabidopsis)
Match: AT4G15000.1 (Ribosomal L27e protein family)

HSP 1 Score: 214.9 bits (546), Expect = 3.200e-56
Identity = 104/133 (78.20%), Postives = 118/133 (88.72%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLK  KAVI+LQGRYAG+KAVI+++FD+GNR+R YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF+K+VNY H+MPTRYTLDVDLK+V T D L SKDKKV A KE KA+ EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133
[Close]
BLAST of Spo20284.1 vs. TAIR (Arabidopsis)
Match: AT2G32220.1 (Ribosomal L27e protein family)

HSP 1 Score: 213.4 bits (542), Expect = 9.400e-56
Identity = 102/133 (76.69%), Postives = 120/133 (90.23%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVK +KPGKAVI+LQGRY G+KAVIV++FD+G  E++YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF KV+NY H+MPTRYTLD+DLK+VV+ D ++SKDKKVTA KE KA+FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133
[Close]
BLAST of Spo20284.1 vs. TAIR (Arabidopsis)
Match: AT3G22230.1 (Ribosomal L27e protein family)

HSP 1 Score: 213.0 bits (541), Expect = 1.200e-55
Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = 1 

		  

Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLK  KAVI+LQGRYAG+KAVI+++FD+G  +R+YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF+K+VNY H+MPTRYTLDVDLK+V T D L SKDKKVTA KE KA+ EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133
The following BLAST results are available for this feature:
BLAST of Spo20284.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902218211|gb|KNA17970.1|5.0e-67100.hypothetical protein SOVF_0750... [more]
gi|902155875|gb|KNA05959.1|4.2e-6698.5hypothetical protein SOVF_1854... [more]
gi|731377251|ref|XP_010667820.1|5.7e-6393.9PREDICTED: 60S ribosomal prote... [more]
gi|731371954|ref|XP_010666201.1|1.2e-6090.9PREDICTED: 60S ribosomal prote... [more]
gi|848885474|ref|XP_012842987.1|1.7e-5989.4PREDICTED: 60S ribosomal prote... [more]
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BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RER7_SPIOL3.5e-67100.60S ribosomal protein L27 OS=S... [more]
A0A0K9QFA8_SPIOL3.0e-6698.560S ribosomal protein L27 OS=S... [more]
A0A0J8B5D6_BETVU4.0e-6393.960S ribosomal protein L27 OS=B... [more]
A0A0J8DZF1_BETVU8.3e-6190.960S ribosomal protein L27 OS=B... [more]
A0A022QVH8_ERYGU1.2e-5989.460S ribosomal protein L27 OS=E... [more]
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BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL273_ARATH5.7e-5578.260S ribosomal protein L27-3 OS... [more]
RL271_ARATH1.7e-5476.660S ribosomal protein L27-1 OS... [more]
RL272_ARATH2.2e-5477.460S ribosomal protein L27-2 OS... [more]
RL27_PEA2.9e-5479.760S ribosomal protein L27 OS=P... [more]
RL27_SOLTU2.3e-5177.360S ribosomal protein L27 OS=S... [more]
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BLAST of Spo20284.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G15000.13.2e-5678.2Ribosomal L27e protein family[more]
AT2G32220.19.4e-5676.6Ribosomal L27e protein family[more]
AT3G22230.11.2e-5577.4Ribosomal L27e protein family[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001141Ribosomal protein L27ePRODOMPD009396coord: 60..133
score: 5.0
IPR001141Ribosomal protein L27ePANTHERPTHR1049760S RIBOSOMAL PROTEIN L27coord: 2..135
score: 5.9
IPR001141Ribosomal protein L27ePFAMPF01777Ribosomal_L27ecoord: 52..133
score: 8.3
IPR005824KOWPFAMPF00467KOWcoord: 7..34
score: 2.
IPR005824KOWSMARTSM00739kow_9coord: 4..31
score: 0.
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 2..133
score: 3.76
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 3..112
score: 6.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0061647 histone H3-K9 modification
biological_process GO:0070933 histone H4 deacetylation
biological_process GO:0006121 mitochondrial electron transport, succinate to ubiquinone
biological_process GO:0009088 threonine biosynthetic process
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006396 RNA processing
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0009658 chloroplast organization
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0007049 cell cycle
biological_process GO:0048478 replication fork protection
biological_process GO:0045037 protein import into chloroplast stroma
biological_process GO:0009409 response to cold
biological_process GO:0009644 response to high light intensity
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0006412 translation
biological_process GO:0016070 RNA metabolic process
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0070932 histone H3 deacetylation
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0030001 metal ion transport
biological_process GO:0009651 response to salt stress
biological_process GO:0006457 protein folding
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0048481 plant ovule development
biological_process GO:0048598 embryonic morphogenesis
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009909 regulation of flower development
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0001510 RNA methylation
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006522 alanine metabolic process
biological_process GO:0009853 photorespiration
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006414 translational elongation
biological_process GO:0006508 proteolysis
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0071806 protein transmembrane transport
biological_process GO:0006421 asparaginyl-tRNA aminoacylation
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006452 translational frameshifting
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009099 valine biosynthetic process
cellular_component GO:0010006 Toc complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0045281 succinate dehydrogenase complex
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005622 intracellular
cellular_component GO:0005730 nucleolus
cellular_component GO:0000118 histone deacetylase complex
cellular_component GO:0005829 cytosol
cellular_component GO:0009506 plasmodesma
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0009507 chloroplast
cellular_component GO:0031359 integral component of chloroplast outer membrane
cellular_component GO:0044424 intracellular part
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005634 nucleus
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0045254 pyruvate dehydrogenase complex
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0009536 plastid
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005618 cell wall
cellular_component GO:0005737 cytoplasm
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0004816 asparagine-tRNA ligase activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0031369 translation initiation factor binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0043022 ribosome binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0003713 transcription coactivator activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific)
molecular_function GO:0097372 NAD-dependent histone deacetylase activity (H3-K18 specific)
molecular_function GO:0046969 NAD-dependent histone deacetylase activity (H3-K9 specific)
molecular_function GO:0046970 NAD-dependent histone deacetylase activity (H4-K16 specific)
molecular_function GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity
molecular_function GO:0004073 aspartate-semialdehyde dehydrogenase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0051538 3 iron, 4 sulfur cluster binding
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0051287 NAD binding
molecular_function GO:0008177 succinate dehydrogenase (ubiquinone) activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo070170.85Barchart | Table
Spo236220.83Barchart | Table
Spo070160.82Barchart | Table
Spo105530.82Barchart | Table
Spo081720.82Barchart | Table
Spo252060.81Barchart | Table
Spo105650.81Barchart | Table
Spo050640.81Barchart | Table
Spo015350.80Barchart | Table
Spo176620.80Barchart | Table
Spo029280.80Barchart | Table
Spo059090.80Barchart | Table
Spo225050.79Barchart | Table
Spo059490.79Barchart | Table
Spo188740.79Barchart | Table
Spo051140.79Barchart | Table
Spo013980.79Barchart | Table
Spo036260.79Barchart | Table
Spo248740.78Barchart | Table
Spo078210.78Barchart | Table
Spo144040.78Barchart | Table
Spo127590.78Barchart | Table
Spo192360.78Barchart | Table
Spo101470.78Barchart | Table
Spo229360.77Barchart | Table
Spo229390.76Barchart | Table
Spo174950.76Barchart | Table
Spo069040.76Barchart | Table
Spo009680.76Barchart | Table
Spo116790.75Barchart | Table
Spo014030.75Barchart | Table
Spo156410.75Barchart | Table
Spo251320.75Barchart | Table
Spo019990.75Barchart | Table
Spo023970.74Barchart | Table
Spo199700.74Barchart | Table
Spo269940.74Barchart | Table
Spo253060.74Barchart | Table
Spo205190.74Barchart | Table
Spo179030.73Barchart | Table
Spo035730.73Barchart | Table
Spo143800.73Barchart | Table
Spo121910.73Barchart | Table
Spo038020.73Barchart | Table
Spo054150.73Barchart | Table
Spo214060.73Barchart | Table
Spo240010.72Barchart | Table
Spo263750.72Barchart | Table
Spo230700.72Barchart | Table
Spo172710.71Barchart | Table
Spo086910.71Barchart | Table
Spo242030.71Barchart | Table
Spo242130.71Barchart | Table
Spo145130.71Barchart | Table
Spo184070.71Barchart | Table
Spo043900.71Barchart | Table
Spo023890.71Barchart | Table
Spo079160.70Barchart | Table
Spo060970.70Barchart | Table
Spo244160.70Barchart | Table
Spo052440.70Barchart | Table
Spo050900.70Barchart | Table
Spo108630.70Barchart | Table
Spo232200.70Barchart | Table
Spo030070.70Barchart | Table
Spo029930.70Barchart | Table
Spo202350.70Barchart | Table
Spo211860.70Barchart | Table
Spo168200.70Barchart | Table
Spo065710.70Barchart | Table
Spo271540.69Barchart | Table
Spo010560.69Barchart | Table
Spo010610.69Barchart | Table
Spo052320.69Barchart | Table
Spo063180.69Barchart | Table
Spo068400.69Barchart | Table
Spo094950.69Barchart | Table
Spo159940.69Barchart | Table
Spo194410.69Barchart | Table
Spo224520.69Barchart | Table
Spo249020.69Barchart | Table
Spo249160.69Barchart | Table
Spo182210.68Barchart | Table
Spo206470.68Barchart | Table
Spo154790.68Barchart | Table
Spo128170.68Barchart | Table
Spo104010.68Barchart | Table
Spo092080.68Barchart | Table
Spo037010.68Barchart | Table
Spo035270.68Barchart | Table
Spo061010.68Barchart | Table
Spo198730.68Barchart | Table
Spo234980.67Barchart | Table
Spo067060.67Barchart | Table
Spo151600.67Barchart | Table
Spo179500.67Barchart | Table
Spo100120.67Barchart | Table
Spo042040.67Barchart | Table
Spo247750.66Barchart | Table
Spo082580.66Barchart | Table
Spo249180.66Barchart | Table
Spo230380.66Barchart | Table
Spo126810.66Barchart | Table
Spo059350.66Barchart | Table
Spo091390.66Barchart | Table
Spo083080.66Barchart | Table
Spo160330.66Barchart | Table
Spo194130.66Barchart | Table
Spo194400.66Barchart | Table
Spo133120.66Barchart | Table
Spo204600.66Barchart | Table
Spo247040.65Barchart | Table
Spo150920.65Barchart | Table
Spo246340.65Barchart | Table
Spo112880.65Barchart | Table