Spo20268 (gene)

Overview
NameSpo20268
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase subunit
Locationchr5 : 9774726 .. 9782228 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATTCATTCCTGATCAATTTGTGAGTAAGTGAGTTAGTGTGTGACTGTGAGTTAGTGAGTGAGTTAGTCTGCAATTTCAGTCAAGTCTTTCATTGCAATTACATGTTAGTTTACTTATTGTAGTCTGTAGACTTGTGGTGCTGGCGTGCTGCTCCCAATTCCCATATGATATTACCATGTTTTAGTTGGTTAGTTTAGTTATTGTGATTTGTGGTGCTCCTGTTTTAGTTGGAAAAAAACTACAAATCCCAACTAACATTGTTCACTTCTGCAAGTTTTTTCTTGTACTTTGTTCATAATTCATGATTTTGTTATTTCAAATTGTGCAAAACGATCCTTGTGAATTATTGTTCAATTGTCGAATTTGATCAACCCTCATTTTTAAAGCTGTTGTGCTTCAAATATGCTAATCTGTAGCTTATGTTCATTTATTGTTGAATGTTGATTGAAATTTCACTGTTTTATTGCTTATGTTCGATGAAATGCTCAAAAGAGTTTGATAACAACTTATGAAGAAGTTGTAGTTCATAGTGTTGTGGACTGATAAGGCCATCCGCAATCGTTGTTAGTTGTTGTACATGTCATTAATTTGGTGGAGTGTTGAATAAATTGTGTACTTTTTTCTTTTTGGTTTTGCAGGTGTGTCCGTCTTATCTTCTAAATAGTTTCTCAAGAATGGAATTTTGCCCCAGTTGTGCAAATTTGCTTCAATATGAAATGCGTATGCCTGCTAGATTCTTTTGTCGGTCATGCCGTTACATATGTCCGATAGAAAAAAAGGTATATCTATATGTATCAGCTGTTCCAATAAGTTTTTAGTCCCTTAAATATATTTTAGAAGAATGAACGTCAACTCCCAATTGGTATCAGGTGAAAATAAAGAGAGGGGTAATTCTCGCCCATAAAGAGGCAACGCCAGTTGTTGTGGGAGAAAAGCAGCATGTTGGGGCTACTACTGATGGTATGTGAATCCTTTTCTATTTTCTTGAGTGGTACGTAGTGTGTTTCCTCTGCTTAACAGCTTATTGTACAAAGAACATACGGAGTACTTATAATTTCCGCAACATAGTGTGATTAACAAAATTTGATGAGATTAGAACTTTCTGTATTAGATTTATTCCGTAGTAGATTTTTAGGCATATGGTAATACGTTATGTTACTCTATTTTCAGCTGTTGAGAAACTCGAATAGCAGTACTAGTCTAAGAAATTCATTGTTTAGAAGTGTTAATTTTTGATGCGTTACCTGTAAATGAGAGGTGGTCTTATAGAACACTGAGACGGTTATACTATTTGCTTTTTATTGGCAATTAAATATTTTATTACCAAGAAGGAACACAAAAAGTACAAGGCAACAGCCCAATTACAACAAAGCTGCACCTCAAAGCCACAAAAGCCTAGAACACCAAAGAAACCACAACAAGCAGCATCCCAAGAGTCTCCACCTTCTAGGAAGGGTTAGACCAAGGAAACAATACGTGCTCAGTTTCTAATCAAAAGCATACACATACTATCAGGAACTCTACAAGCCATTTTGAAAAGAATTTCTCTATAAACCTGCAAGGGGGATTACAAACCCCTTTGAAGACCACATCATCTGGATCCAAATAGCGTACACAGCTTCAGCAAACAGCATAAAGCTCTACAGTAAAGCTCTCTGGTTGTCTGCTAAACGACACCTGAAAAAGCTCATGCCATAATGCCATAATACCATATTGGCCTAGAGTAAGGACATAGGAAGAACATGTGATCAACATCTTCTGCACATCTCCCACATAACCTGCAAGAATCAGTATCTACCACCTTCCATCGCGCAAGCCTAACAGCAGTAGGAAGCCTATCCAAGATAGTCAGCCACAAAATGAAAATGCCTTTTGGAGTTGCTAATTTATCACACACAATCCTCCTCCAATCCATGCCACTTTAGGGAAATCACCTCTTAAGTGTTGATACGTCAACTTGATAGAGTAATTTCCATTAGATTGGACATTACCCCACCCTCCAACATCCTCCACATACTTTGAGAGTTTGAGCATTCAAAAATTTTTCCTCAATATCCATGACATAGGCTTAAGGTTAACCCATGTCCCAGCTTCCCTGTTCTTCAAATAGTAACTGTTACCCACCTGACCCTGACCCATAGTTTGTCTTTCTTATTAGTAATTGCCCACAACAACTTTGAGACAGCAGCTCTATTCCAAGCGATCATATCCATGACATTCATCCCACCTGTAGACTTTGGCATACACACTGAATTTCAAGCTACTATAGCCTTTTTTGATACGTTTGCAGAGCCTGTCCAAAGGCATATCCTACATTTTCTTTCCACTTCTTTTATCACCTTTTTTTGGGAGAACAAAGAGTTGGCACCAGAAGGTTGCAAGCTAAACAGAATAACTTTCACTAGTTGTAACCGACCAGCGTAGGTTAGATGCCTAGCATCCCAAGACCTGATTCTTGCAAGCACTCTGTCTACCAAGGGTTTATACGGATTATAGCCCAACTTCTTAGTGGAAAGAGGAACCCCTAAGTACCGAAACGGGAAATCTCCAGTAGGCATTTGAAGAATTTCAAGCATTCTTTGACTAGCATGATAACTGATCCCACCAAAATACACATTGCTTTTATCAAGGTTTGCTTCTAGACCAGAAGCAGAAAAGAAGAGCATGAAAGCTTTAAACATCAAGTCCACTGAAATCTCATCCCCACGAGAGAAAAGCAATAAATCATCCGCAAACATAAGATGAGTTATTGCTAATTTCTCACATTTTGGGTGAAAATTAAAATTTGGATACTTCACAAGTTGTCTCAAACACGTACTCCTTTCCTAATGCAAACAGGAAGGGAGACATAGGGTCCCCTTGTCTCAAACCTTTCCTAGCTTCAAAAGGAGGGCTTGGCCTACCATTGATGAGAATACTGAAAGAAACTGAAGTAATACATGCAAACACCCAGTCAACAAATTTTACCTGGAAAACCCAATTGAATCATAACCCCCTGTAAGAATGGCCACTCTAAGGAGTCATACGCCTTTTTCAAGTCAACCTTCATCATGCATCCAGGAGAAATGTGAGATCTATTGTACCCCTTAACTCTGTTGCTAATAAGTTATTATCAGAAAGATGTCTCTCTGGGATAAAACCTGCTTTCTCACTCAAGGCTCACCACTTCTGATAGTTCAGTAGGAACACTTGACAAGAGGGGGGTGAATTGTTTCTTGGGAACTTGAGTAAGTTTCTTGCGGAATTTAAACAATAAAGAGACTGAGAACAATGAGCGAAGAAAGATATAAAACGGAGGAACCTTCTTGACCCTAATCAAGAAGAACCTCACTACTCTTTTGTATTAATGCAATAACTCTATTACAAATACACTCTTTAACTCGAGTTCCTCTCGAACACGAGTTCCCCACAGCAATCCCCTTCGATTACTGTGCTACTATTTCTCTCTCTGACTTAACTCTAAGTCGCTCCTTTTCTCTTTGACTTAACTCTAAGTCACTCAAGGATCACTCAATCCTTAAACCCAAAATACAATATGATAGATAGATTCTAGTACGTAATAAAGCTTATAGTAATAAGGAACTCAAGGAACATTCTATTTTGCCAACTGACTTTTTTAAAACGTTTAAGCTCTTTAAGATAGATTTTGTAGAAATCANCTCTAAGTCACTCAAGGATCACTCAATCCTTAAACCCAAAATACAATATGATAGATAGATTCTAGTACGTAATAAAGCTTATAGTAATAAGGAACTCAAGGAACACTCTATTTTGCCAACTGACTTTTTTAAAACGTTTAAGCTCTTTAAGATAGATTTTGTAGAAATCAGTTGTGTTTTGAAAAGCCAAAACTCTTCTCCTTTTATAGGAGAGTTTTACCTAAGGTTGGGTACCCATGTTCTCCTCAACTACCCACTAACAGTTACTGCTCAGTAACATGGGCATACTTGGAGAGAAACAGGGAGACCAAATCAAAACACTAAATGCACGTTTAAACAGAAATACGTGGGAGAGTTTTAAGGATCATGGAAAATCTTTTGCTTGAGAAACAAGGAGAATGAAAACAGAATCCTATGTTTACATTTATTAATTAAATTCATTTTATTTATTAACAAAGATTTTCCAACTCTTTTATAATTACAGTTAATATATTTCAATTTAAAACGTACCAAAATACTTAGGTTCCTTTCGTTCCAAATTACGTATAAACAATATTAAATACTTACATAAATCCTAAACATAAACTCATATGTTGTAGTCTTCATGTTGCACCTTTAGAAGCTTCACTCGAAGACTTCCCAATTTGTTCCTTCTCTGGAACATCGAGGATCCACATAATATATGAGGATCTCGCCTTAGGAACTCGCCTAAGGATCTCGCCTTTGTAAACTTGCTTAATGATTATATCTTCAATGTAGTGTCTGACATGGATCAATTACTTGCTTATATTCCACGTTGCTTAGTTTATCCAACTCAGGATCTCCTTAACTTAGCATTATCCCTCTAAGGATCTCGGAACCTATTATGCAACATAACTTAACCAATTGTCAGGAGTTTGTTTTGTCATCATCAAAACTTTAGGGTCAACAACTTCACCTATCACAACTTGCATTCTTGAGGTAAGGATTTTAGAAATGATTTAATAAATCCAAGTGCAGCAAGCTATAGGTCTAAAATCTTTCACTTTCAAAGCATTTGTCACCTTAGGGACAAGGGTGATAGATGTACAATTAACTTGCTTTAACATAACCCCTGTTCTGAAGAACTCCTTGACTGCAGAACATACATCGTGTTTCACTATATTCCAACTTCTCTTAAAGAACACTGCATTGTATCCATCTAACCCTGGAGCCTTCCCATCCCCTATACCTTTCAAAGCATTATCGATTTCATCATTTGTGATCTCTGCATTCAGAAAATTCCTTGCAGCTACACTTAATCTAGTACCATCTATTATAATAGGAGTATTCACCATTGGCAGCCTTGATGCAGCTAAGCCAAGAAGCTTTTTTTTAGAATTGCAGAATTTCTTGTTGGATTTCCTTCTCATCCACCAGCTTTCTTCCTTGACTATCATAGAGCACAGTTATTCAATTCATTCGCAGCCTTTCCTTGACAGAAGCGTTAGAAAAATTGGTGATTAGAGTCACCAATCGAGAGCTATTGAACCCTAGATTTTTGCTTCAAAGCAATTTCTTCCACTCGCATCCACTTTTTAGCTCCAAGGAACCCTGACATTCAGTCAGCCTCCAGTAAACTTGTGTTCCCAACATCACTTTGCAGATAGGATAGAATTATCTCAAGCTGCGGTCTAGCCTGCTCAATTCTTTATGGATTACTAGAGAACTCTTCACTATATAGGCCCTTCAATTTTCCCTTTAACCGCTTTAATTTTCGCCAAAGAACTTCCATTGCGGTACCTGAGTTTCCTGTACCCAGACCTCTGTAACAATATCATTAAAGAGCTGTGATCACAAAGGTAATTAAAGAACTTGAACGGCCTCCCCCCTCCTTGGGAAGGAGGTAACCAGCTTATAAGAATTGGTGAATGGTCAGAAAGTAGTCTGCAACAACATCTCCGTAATCATTCATCCACTGTGCGTTACCAAAAGCTCTGTCTATTCTGCTTGCTGTCTTATTGCTCCCTGCCCCTTTACGCGAAGAGTAAAAATGACCCACGGATTTCACCTCAAACAACCCAGCAACATCCACGCACTCAGAGAAATCTTTGATCTCATGAACTGTAACAGGAGCTCCCAAAATTCTATCAGTCATGCTTAAAATTGTGTTGAAGTCTCCAGATAACAACCAAGGACCGTCTCCATTAATTGCTGCAAGTCTATGCACACTTTGCCAAAGAGGTTTCCTGGTTTCTATTGTATGCAGCCCATAGATGGCAGTAAAAAAGAAACAAGCAACACCCTGATTATTTAAGACTTGACAATGTATATATTGCTCATGAATATCAAGAATACAAATATTGAGTTCATTTTAGTTCCACCCAAGCCAAATTCTACCTCTAGGGTTCAGATCAGTATTATTCACCCAAGACCAATTTCTATCAAATTTCTTTTCTATACATTTACTCTTATAACTCTTAACTCGTGTTTCAATACGAGCAGTTAATTTTATACTATGCTTTCTTATAAACTGTTTCACCTCAGCCACTTTAAGAAGCTCATTGAGCCCTCTCACATTCCAAGTGCACAGATTCATGAAACCAGAGGGGGGATCCTGCTTAACTCACCATGCACTGCTTCCTCATTGTCATGTCCTGAAACACCCTCTGCCGCATTGTTTCCCTCCTCAAGTTCAGCAACTCCCTCCAACACAGAGAAGTTGTTGGAAGAAGGCATTTGCCAACCATCAGCATCAGATTGCATTGAAGGAAGACTCTGCCCTTCAGGAGTTTCCATACTAGGAGTGACAACATGATCTTGTGCCATACCCACTAGTTGAGTAGCTTGCCCCTTTTTAGGCACCACCCCTCCTTTTTTGAGTCACAGGCTGCTTGTTTCTAACTTTCTGCTGCTCTTTTCTTTGAAGTGAACAATCGTGCCCCACGGCTATGCTATTTGCTTTTCATATTGGGAAATTGCTTGGATATGGGTACGCAAACGGTCTACTAACTTGTGATTGAAGCCTCTGTAGTATAATTATCCCACTCAATTGAACTTTGTGCGGAGTAGTGTTTTTGATGAAACTGCTGAATGATAGGATGCCAATTACACTGCTGATAAATGATAATGCTACCATTTGCTTGTTAAGATAGGTTAAAATATGCCCATAATTTGTTTTCTTTCTTCAGTCCTTTGGTTTAACAGGATTTTGTTTGCTTAAGTTGGGTTCATATGGCCACGCCTTTTGTAAATGAAACGAAAATGATTGGCAAACTAGTATAAGTTGGTAGTTTATCCAGGAGGAACGGATAGATTCATAGCTTTGCCTTGTCCAAAGTATTGAATAGTCCCTCCATCTCGTTTTACTTGCTCGATTTGACTATTTTTTGTGAGAGTTTTTTGGGTCAAATGAAGCAAGTAAAATGAGACGGAGAGAGTACGAAACTGTGAAGTATGTTTGTAGTTAAATGACTGACTCCAGTATTCAATTTTATGGCTAGCTCCGTTCTGTTTTCTTATTGTAGCATGAATGCAAAATATCAACTTTTGACTGGCTAAACCAGAACTGATCAATCATGTATTTTTATCTGCAGCGACATGTCCAAAATGTAGCCATGGCAAAGCAGAATTTGAACAAATGCAGACCAGATCGGCTGATGAACCCATGACAATATTTTACAAATGCTTGAACCAGAGTTGTAAACATAATTGGAGAGAAGATTAATCAGATTCCTTCATCATTTGTCATCAGTTCTCGTGAAGGTTTTGCTAGCGATCATGTCATCTTTTCCTTTGGGTCGATTTTGTTTTCTTATTATAGAATTTTCTTTTTCTTTGCTCATAGTTTACAGTTTTTTCCCCCAGAGTTCATCTTGTAG

mRNA sequence

ATGCGATTCATTCCTGATCAATTTGTGTGTCCGTCTTATCTTCTAAATAGTTTCTCAAGAATGGAATTTTGCCCCAGTTGTGCAAATTTGCTTCAATATGAAATGCGTATGCCTGCTAGATTCTTTTGTCGGTCATGCCGTTACATATGTCCGATAGAAAAAAAGGTGAAAATAAAGAGAGGGGTAATTCTCGCCCATAAAGAGGCAACGCCAGTTGTTGTGGGAGAAAAGCAGCATGTTGGGGCTACTACTGATGCGACATGTCCAAAATGTAGCCATGGCAAAGCAGAATTTGAACAAATGCAGACCAGATCGGCTGATGAACCCATGACAATATTTTACAAATGCTTGAACCAGAGTTGTTTTGCTAGCGATCATGTCATCTTTTCCTTTGGGTCGATTTTGTTTTCTTATTATAGAATTTTCTTTTTCTTTGCTCATAGTTTACAGTTTTTTCCCCCAGAGTTCATCTTGTAG

Coding sequence (CDS)

ATGCGATTCATTCCTGATCAATTTGTGTGTCCGTCTTATCTTCTAAATAGTTTCTCAAGAATGGAATTTTGCCCCAGTTGTGCAAATTTGCTTCAATATGAAATGCGTATGCCTGCTAGATTCTTTTGTCGGTCATGCCGTTACATATGTCCGATAGAAAAAAAGGTGAAAATAAAGAGAGGGGTAATTCTCGCCCATAAAGAGGCAACGCCAGTTGTTGTGGGAGAAAAGCAGCATGTTGGGGCTACTACTGATGCGACATGTCCAAAATGTAGCCATGGCAAAGCAGAATTTGAACAAATGCAGACCAGATCGGCTGATGAACCCATGACAATATTTTACAAATGCTTGAACCAGAGTTGTTTTGCTAGCGATCATGTCATCTTTTCCTTTGGGTCGATTTTGTTTTCTTATTATAGAATTTTCTTTTTCTTTGCTCATAGTTTACAGTTTTTTCCCCCAGAGTTCATCTTGTAG

Protein sequence

MRFIPDQFVCPSYLLNSFSRMEFCPSCANLLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHVGATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSCFASDHVIFSFGSILFSYYRIFFFFAHSLQFFPPEFIL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20268.1Spo20268.1mRNA


Homology
[Close]
BLAST of Spo20268.1 vs. NCBI nr
Match: gi|902234393|gb|KNA23433.1| (hypothetical protein SOVF_024790 [Spinacia oleracea])

HSP 1 Score: 215.7 bits (548), Expect = 5.800e-53
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

		  

Query: 21  MEFCPSCANLLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHV 80
           MEFCPSCANLLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHV
Sbjct: 1   MEFCPSCANLLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHV 60

Query: 81  GATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 122
           GATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC
Sbjct: 61  GATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 101
[Close]
BLAST of Spo20268.1 vs. NCBI nr
Match: gi|731335178|ref|XP_010678599.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 162.9 bits (411), Expect = 4.500e-37
Identity = 76/101 (75.25%), Postives = 85/101 (84.16%), Query Frame = 1 

		  

Query: 21  MEFCPSCANLLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHV 80
           MEFCP+C+NLLQYEM  PARFFCR C Y+ PIE+KVKIKR V L  KEATP+ VGEK +V
Sbjct: 1   MEFCPTCSNLLQYEMHNPARFFCRCCPYVSPIERKVKIKRKVQLVKKEATPIAVGEK-NV 60

Query: 81  GATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 122
           GA TDA+CPKC HGKA F Q QTRSADEPMTIFYKC+N+SC
Sbjct: 61  GAVTDASCPKCHHGKASFHQAQTRSADEPMTIFYKCMNESC 100
[Close]
BLAST of Spo20268.1 vs. NCBI nr
Match: gi|870858945|gb|KMT10409.1| (hypothetical protein BVRB_5g115390 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 134.8 bits (338), Expect = 1.300e-28
Identity = 64/87 (73.56%), Postives = 71/87 (81.61%), Query Frame = 1 

		  

Query: 35  MRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHVGATTDATCPKCSHG 94
           M  PARFFCR C Y+ PIE+KVKIKR V L  KEATP+ VGEK +VGA TDA+CPKC HG
Sbjct: 1   MHNPARFFCRCCPYVSPIERKVKIKRKVQLVKKEATPIAVGEK-NVGAVTDASCPKCHHG 60

Query: 95  KAEFEQMQTRSADEPMTIFYKCLNQSC 122
           KA F Q QTRSADEPMTIFYKC+N+SC
Sbjct: 61  KASFHQAQTRSADEPMTIFYKCMNESC 86
[Close]
BLAST of Spo20268.1 vs. NCBI nr
Match: gi|297745506|emb|CBI40586.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 129.8 bits (325), Expect = 4.200e-27
Identity = 65/111 (58.56%), Postives = 77/111 (69.37%), Query Frame = 1 

		  

Query: 17  SFSR---MEFCPSCANLLQYE---MRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEAT 76
           SF+R   MEFCP+C N LQYE   M  PARFFC +C Y+C IE KVKIKR   L  KE  
Sbjct: 58  SFTRLQQMEFCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIE 117

Query: 77  PVVVGEKQHVGATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 122
           P+   +    G TTDATCP C+ GKA F+Q+QTRSADEPM+ FY CLN++C
Sbjct: 118 PIFSKDDMKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENC 168
[Close]
BLAST of Spo20268.1 vs. NCBI nr
Match: gi|225470966|ref|XP_002267122.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Vitis vinifera])

HSP 1 Score: 129.0 bits (323), Expect = 7.200e-27
Identity = 62/104 (59.62%), Postives = 73/104 (70.19%), Query Frame = 1 

		  

Query: 21  MEFCPSCANLLQYE---MRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEK 80
           MEFCP+C N LQYE   M  PARFFC +C Y+C IE KVKIKR   L  KE  P+   + 
Sbjct: 1   MEFCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIFSKDD 60

Query: 81  QHVGATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 122
              G TTDATCP C+ GKA F+Q+QTRSADEPM+ FY CLN++C
Sbjct: 61  MKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENC 104
[Close]
BLAST of Spo20268.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVE3_SPIOL (DNA-directed RNA polymerase subunit OS=Spinacia oleracea GN=SOVF_024790 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.100e-53
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

		  

Query: 21  MEFCPSCANLLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHV 80
           MEFCPSCANLLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHV
Sbjct: 1   MEFCPSCANLLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHV 60

Query: 81  GATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 122
           GATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC
Sbjct: 61  GATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 101
[Close]
BLAST of Spo20268.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CDZ9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g115390 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.100e-29
Identity = 64/87 (73.56%), Postives = 71/87 (81.61%), Query Frame = 1 

		  

Query: 35  MRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHVGATTDATCPKCSHG 94
           M  PARFFCR C Y+ PIE+KVKIKR V L  KEATP+ VGEK +VGA TDA+CPKC HG
Sbjct: 1   MHNPARFFCRCCPYVSPIERKVKIKRKVQLVKKEATPIAVGEK-NVGAVTDASCPKCHHG 60

Query: 95  KAEFEQMQTRSADEPMTIFYKCLNQSC 122
           KA F Q QTRSADEPMTIFYKC+N+SC
Sbjct: 61  KASFHQAQTRSADEPMTIFYKCMNESC 86
[Close]
BLAST of Spo20268.1 vs. UniProtKB/TrEMBL
Match: F6I6G3_VITVI (DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_15s0046g00090 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.000e-27
Identity = 62/104 (59.62%), Postives = 73/104 (70.19%), Query Frame = 1 

		  

Query: 21  MEFCPSCANLLQYE---MRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEK 80
           MEFCP+C N LQYE   M  PARFFC +C Y+C IE KVKIKR   L  KE  P+   + 
Sbjct: 1   MEFCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIFSKDD 60

Query: 81  QHVGATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 122
              G TTDATCP C+ GKA F+Q+QTRSADEPM+ FY CLN++C
Sbjct: 61  MKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENC 104
[Close]
BLAST of Spo20268.1 vs. UniProtKB/TrEMBL
Match: I1KJX9_SOYBN (DNA-directed RNA polymerase subunit OS=Glycine max GN=GLYMA_07G131200 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.200e-26
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 1 

		  

Query: 21  MEFCPSCANLLQYE---MRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEK 80
           MEFCP+C N+LQYE   M  P+RFFC +C Y+C IE +V+IKR   L  KE  P+   + 
Sbjct: 1   MEFCPTCGNMLQYELPYMGRPSRFFCSACPYVCLIENRVEIKRKQRLVSKEIEPIFSEDD 60

Query: 81  QHVGATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 122
               A+T+ATCP C HGKA F++ QTRSADEP T+FYKCLN  C
Sbjct: 61  MTNAASTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNEC 104
[Close]
BLAST of Spo20268.1 vs. UniProtKB/TrEMBL
Match: A0A0B2Q8J2_GLYSO (DNA-directed RNA polymerase subunit OS=Glycine soja GN=glysoja_032151 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.200e-26
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 1 

		  

Query: 21  MEFCPSCANLLQYE---MRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEK 80
           MEFCPSC N+LQYE   M  P+RFFC +C Y+C IE +V+IKR   L  KE  P+   + 
Sbjct: 1   MEFCPSCGNMLQYELPYMGRPSRFFCSACPYVCHIENRVEIKRKQRLVRKEIEPIFSEDD 60

Query: 81  QHVGATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 122
                +T+ATCP C HGKA F++ QTRSADEP T+FYKCLN  C
Sbjct: 61  MTNAPSTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDC 104
[Close]
BLAST of Spo20268.1 vs. ExPASy Swiss-Prot
Match: RPC10_HUMAN (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens GN=POLR3K PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 9.100e-14
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 1 

		  

Query: 23  FCPSCAN-LLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEK--QH 82
           FCP C N L+  E +   RF C +C Y+  I +KV  ++   L  KE   V+ G    ++
Sbjct: 4   FCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAWEN 63

Query: 83  VGATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 122
           V +T ++ CPKC H +A F Q+QTRSADEPMT FYKC N  C
Sbjct: 64  VDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQC 102
[Close]
BLAST of Spo20268.1 vs. ExPASy Swiss-Prot
Match: RPC10_MOUSE (DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.600e-13
Identity = 46/102 (45.10%), Postives = 60/102 (58.82%), Query Frame = 1 

		  

Query: 23  FCPSCAN-LLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEK--QH 82
           FCP C N L+  E +   RF C +C Y+  I +KV  ++   L  KE   V+ G    ++
Sbjct: 4   FCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAWEN 63

Query: 83  VGATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 122
           V +T +  CPKC H +A F Q+QTRSADEPMT FYKC N  C
Sbjct: 64  VDSTAEP-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQC 102
[Close]
BLAST of Spo20268.1 vs. ExPASy Swiss-Prot
Match: RPC10_BOVIN (DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus GN=POLR3K PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.900e-12
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 1 

		  

Query: 23  FCPSCAN-LLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHVG 82
           FCP C N L+  E +   RF C +C Y+  + +KV  ++   L   +         ++V 
Sbjct: 4   FCPGCGNGLIVEEGQRCHRFACNTCPYVHNVTRKVTNRKYPKLKEVDDELGGAAAWENVD 63

Query: 83  ATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCLNQSC 122
           +T +  CPKC H +A F Q+QTR ADEPMT FYKC N  C
Sbjct: 64  STAEP-CPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQC 102
[Close]
BLAST of Spo20268.1 vs. ExPASy Swiss-Prot
Match: TFS_THECE (Transcription factor S OS=Thermococcus celer GN=tfs PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-11
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 1 

		  

Query: 21  MEFCPSCANLLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVI---LAHKEATPVVVGEK 80
           M+FCP C NL+  + +    + CRSC Y  P +++   ++ VI   + HK    +VV E+
Sbjct: 1   MKFCPKCGNLMLPDRKRKV-WVCRSCGYEEPFDEEKDREKTVIKQEVKHKPDEGIVVIEQ 60

Query: 81  Q-HVGATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKC 117
                 TT  TCPKC +  A + +MQTR+ DEP TIFYKC
Sbjct: 61  DLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKC 99
[Close]
BLAST of Spo20268.1 vs. ExPASy Swiss-Prot
Match: RPC10_SCHPO (DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc11 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.000e-9
Identity = 40/101 (39.60%), Postives = 54/101 (53.47%), Query Frame = 1 

		  

Query: 21  MEFCPSCANLLQYEMRMPAR--FFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQ 80
           M+FCP+C N L   +    R  F CR+C Y  PI   +  +     A KE   V+ GE+ 
Sbjct: 1   MQFCPTCGNHLIVAVDEEGRNAFDCRTCPYHFPISTFLYSRHE--FAQKEVDDVLGGEEA 60

Query: 81  -HVGATTDATCP--KCSHGKAEFEQMQTRSADEPMTIFYKC 117
                 T+ TC   KC + +A F Q+Q RSADEPM+ FY+C
Sbjct: 61  FESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRC 99
[Close]
BLAST of Spo20268.1 vs. TAIR (Arabidopsis)
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal)

HSP 1 Score: 105.9 bits (263), Expect = 2.300e-23
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1 

		  

Query: 21  MEFCPSCANLLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHV 80
           MEFCP+C NLL+YE    +RFFC +C Y+  IE++V+IK+  +L  K   PVV  +    
Sbjct: 1   MEFCPTCGNLLRYEGGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDDIPT 60

Query: 81  GATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCL 118
            A T+A CP+C H KA F+ MQ RSADEP + FY+CL
Sbjct: 61  AAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL 97
[Close]
BLAST of Spo20268.1 vs. TAIR (Arabidopsis)
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal)

HSP 1 Score: 100.5 bits (249), Expect = 9.600e-22
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 1 

		  

Query: 21  MEFCPSCANLLQYEMRMPARFFCRSCRYICPIEKKVKIKRGVILAHKEATPVVVGEKQHV 80
           MEFCP+C NLL+YE    +RFFC +C Y+  I+++V+IK+  +L  K    VV  +    
Sbjct: 1   MEFCPTCGNLLRYEGGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDIPT 60

Query: 81  GATTDATCPKCSHGKAEFEQMQTRSADEPMTIFYKCL 118
            A T+A CP+C H KA F+ MQ RSADEP + FY+CL
Sbjct: 61  AAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL 97
The following BLAST results are available for this feature:
BLAST of Spo20268.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902234393|gb|KNA23433.1|5.8e-53100.hypothetical protein SOVF_0247... [more]
gi|731335178|ref|XP_010678599.1|4.5e-3775.2PREDICTED: DNA-directed RNA po... [more]
gi|870858945|gb|KMT10409.1|1.3e-2873.5hypothetical protein BVRB_5g11... [more]
gi|297745506|emb|CBI40586.3|4.2e-2758.5unnamed protein product [Vitis... [more]
gi|225470966|ref|XP_002267122.1|7.2e-2759.6PREDICTED: DNA-directed RNA po... [more]
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BLAST of Spo20268.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RVE3_SPIOL4.1e-53100.DNA-directed RNA polymerase su... [more]
A0A0J8CDZ9_BETVU9.1e-2973.5Uncharacterized protein OS=Bet... [more]
F6I6G3_VITVI5.0e-2759.6DNA-directed RNA polymerase su... [more]
I1KJX9_SOYBN7.2e-2655.7DNA-directed RNA polymerase su... [more]
A0A0B2Q8J2_GLYSO7.2e-2655.7DNA-directed RNA polymerase su... [more]
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BLAST of Spo20268.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPC10_HUMAN9.1e-1445.1DNA-directed RNA polymerase II... [more]
RPC10_MOUSE1.6e-1345.1DNA-directed RNA polymerase II... [more]
RPC10_BOVIN2.9e-1240.0DNA-directed RNA polymerase II... [more]
TFS_THECE1.1e-1141.0Transcription factor S OS=Ther... [more]
RPC10_SCHPO4.0e-939.6DNA-directed RNA polymerase II... [more]
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BLAST of Spo20268.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G07950.12.3e-2350.5DNA-directed RNA polymerase, s... [more]
AT1G01210.19.6e-2248.4DNA-directed RNA polymerase, s... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 86..118
score: 1.6
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 86..127
score: 5.7
IPR001222Zinc finger, TFIIS-typePROFILEPS51133ZF_TFIIS_2coord: 84..129
score: 12
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 22..73
score: 4.
NoneNo IPR availableGENE3D2.20.25.10coord: 76..121
score: 1.5
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..121
score: 1.3
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 1..121
score: 1.3
NoneNo IPR availableunknownSSF57783Zinc beta-ribboncoord: 72..118
score: 6.23

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0042742 defense response to bacterium
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0042793 plastid transcription
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006629 lipid metabolic process
biological_process GO:0048513 animal organ development
biological_process GO:0045176 apical protein localization
biological_process GO:0010540 basipetal auxin transport
biological_process GO:0048825 cotyledon development
biological_process GO:0010229 inflorescence development
biological_process GO:0009911 positive regulation of flower development
biological_process GO:0016567 protein ubiquitination
biological_process GO:0007165 signal transduction
biological_process GO:0030968 endoplasmic reticulum unfolded protein response
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009410 response to xenobiotic stimulus
biological_process GO:0006508 proteolysis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0009415 response to water
biological_process GO:0044237 cellular metabolic process
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0016311 dephosphorylation
biological_process GO:0006651 diacylglycerol biosynthetic process
biological_process GO:0006687 glycosphingolipid metabolic process
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0048868 pollen tube development
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006950 response to stress
biological_process GO:0042908 xenobiotic transport
biological_process GO:0019252 starch biosynthetic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005770 late endosome
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016020 membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0051087 chaperone binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005515 protein binding
molecular_function GO:0047874 dolichyldiphosphatase activity
molecular_function GO:0008195 phosphatidate phosphatase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0043565 sequence-specific DNA binding
RNA-Seq Expression