Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATAATCTGGATGGATTTACAATCTAACGGCTACCGAAAATTAATCAACAAAACTTCAAATTTTAATAATGCTAATTTGCCCCAAAATCGCATTTCTACAACAGGCTCCAAAAAACTAGCCGTTACGGAACTCCCGTATCCAACCAACGTTCACCTTATTCTCCCATTTTCTTTCCTTCTCAATTTCTCACTATCATCGCACAAAACCCATCTCTCCCTCTTTCGCTCTCTCCTACTCTCTCTATCATTTCCAGTTTAAGAAAGTAAAATGGCGACTCCAACAAGAGACGCACAAGGTGTTCGATTAAATGCCGCCGAGAATATAAAGAACCAGGAGAATTCAAACCCGAATTTGAAATCATCTCCTTTGATTAAATCCGCTAAAACACAAATGTCCGGGGTTAAAAACCCTAATCGTTCATTTATTTCACCCAAAAAGAAGATCAGGGAGAGGAAATTTGTGGTCGCGAAGAAGAATAATGCGAAGAAACAAGATATGAGTCGGAATTGTAAGTGTAAAGATAGGGTTAACGGGAAGTGTTTGTGTGTTGCATATGAGAATTTGAGGGTTTCTCAGGAGGACTTTTTTAAGAGTAGGGATGATACTGGGGTTGAGGAGTGTGAAGATTTTGATAAACCCAGAAGTAATGATGGTGGGGAATGTGAATTTAGGGGTTTGGAGGAAGTGGGTGGTTGTGATCCGGAGGCGGCCGAATCCCCAAAAGGGTTGGGAAGTTCAACAACGAAACGGAGGAGGGATATACTGTTGGAGGAAGCGAGGGCAAGTGTTCCGGAGTCGGGTTCAGGGAGGGTTTTGCATCTGGTGAAAGCGTTTGAGAGGCTGTTGACATTGCCTAAGAAATCGGATGGTGATCATAAAGATGATGATGATGAGGAGGAAGAGGATACAAAGAAAGAACTTAAATGGCCGTTGCCTGGATTGCAGCCGCAACCGCCTAGAGCTCCTGAGACCCAGGAATCATCGTCTGCATTTTGTCCTGGCGAATTGTTCTTTAATGCAGGATTCGATGCCCAAGTCTCTTCTTCATTGGATAGTAGCAGGGGAAGGTATAATATTTTGTTGTGTGGATTTAATTGAATGTTTTCCGGCTTTGATTGCATCTTTATTTGGTTTATTTATAGTGTTTCGAGCAGAAGTTCGGTTGGAAGTCGAAGAAGCAGAAGAAGTGTAAGCACAATTTTGGGCTCTATGCATTATTTGTATAACTATATGTTCTAGATGTATTTTGTGGCTTATGTTTTGGAATTATAACCTTTTCAGGGCTCATTTTCTTCTGGGACTGTTGGTGGAAGAAAGTGGACGAAGAAGGAACAGAAGAAAGTCACATCACTGAGACCATTCAGGCTTAGGACAGAGGTATGATCACTGCATCATTCTTATTGAATTTCTAATACAAAGTATTTGATTCTGCTATGTTTTTTTAGGCTATGGTTTTTGTTTAAATTAATTACAATGAGGAACCATTTTATGAAGAAGTTTTCTTCTGTATATGAAATTATAACTAGAATTTATTTCTGCAGAGTTTTATATTCTGTGTATAAGAATAACTGGTCTTTCCTGTTTGTATCATGTGGAGAAGAGGAAGTTTGATCAGCCTTTTTTATATTGCTGGATTGATGTTATATGGTGATCTAGGATGTTTTTGTGGTACTTTTAATGCCATTGGATATTCTTGGGGAAGGTATTGGTGTTCTATGGTGATCTAGGATGTTACTTCCCACTCTTCCAGTGGTTGGGACGAGTGTTCTTTATGAGTGTATGTGCCTCCAATATTTATTCTTTTTATGCAGGATTTCTATACGGTTCTTCTATTTAACATGACTTGCTAGTTAGACAAGTCATAGCATCATCATCACGTTCTACTCGAGGTTGTAAAAGGTTTCTCTGAATATGGTTTTTCATTCTCTGGAAGATAGGGGTGGAAACTGGAATGTATTGATTTTTCCTTCCATTGATTAGAACAAGTAATGTTTATGGGATTTGGGTCTTTAATGAGCAAGATTTCTATAGGTGAACTTTCTTTTCAATACTTATGCTAGTTACATAAGCCATAGTGTTGGAACTTGGAAGATAGAGGTTCAACAGGTAGTATGTTGTTGCCGAAAGTAGTTTGTCTTCACCATATATGTATTTCATGCTTGAGTTATTGTCAGCATTCTTAACAGATGGATTATAAGTTATGATGGTGAAATGTCGATGCATATGCTTCAGATGAAATATTATTGTTGTTTGTCTTCTGGATACAATTTTTTTCAGAAAAGTTACTGTGATTGAGAAGAAAATATTGTGCCCCATTTCAAATAGGCCAGATGAATTGAATTCTCGTTCTCGTTCTGTTTTGTTTTCTTTTTTTGAGCTTGCCAATCACAGGAAAGCTTTCTTTAGCTGCAACCTGCAAGTATCATCTCTTAATTAGCTTGTGTATGCTTGGAAATAAGAGTGAAATGTGACAGCAGACGATTAAGTAATGTTTCATTTTTAAATAAACAAGTTGACTACTGTGAAACTTAGTGTAGTTATATGATGGTTAGTCGTCTTTAGTTCTTTACTCCCCTTTCCTTTGTCACCTCTTCTTATTCCTAGTGCTTTTTCTCCCCCAAGTTTTTATTATTGTGCATGTTGTAATTAAATTATCTGCTTCCTCCACCCATAATTTCAGCAAAGAGGAAAAATGAAGGAGGAGGAGTTCGTAAAAAAATTACAAGAGATGATGATTGAAGAGGAGAAGCAGCGGATTCCTATTGCACAAGGCCTTCCATGGACAACTGATGAACCAGAGGTGAGCCTTATTAGACTCTGTGTATCCTCAATTCAAGTGCTTCAATATTTGTCAGTGTTTGATGGATTATACTTGAATAATTCTTGCAAATGCTACTTTGAATTATAACTTTTTGTATGTTTTATGTAGTGTCTGGTAAAACCAGCAATTAAAGATATCACAAGACCAATCGACCTGAAGCTGCACAGCGATGTTAGGGCTGTGGAGCGTGCAGAGTTTGACAACCAGGTAAGACATTGAAGTCATTCTTTTAGTTCTCTTGACAGCTTTTGTTTGCATCACTTATGTTGCTAATGTTGTTTTATACTGTATTTAATTACCAGGTGTGTGAAAAATTGACGTTGATAGAGCAATACAAACTGGAAAGAGAGAGGCAACAGAAGGTACATTACAGAAGAAAAAAAAAACCTAATACATAAACTGTGTTATTATGATTCTTTTGATCTCAACAACTTCATTCATAAAATTTTCCTTTGCTGTTAACAGTTAGAAGAGGAAGAAGAAATAAGAAGATTAAGAAAGGAACTCGTCCCGAAAGCTCAGCCTATGCCTTACTTTGACCGACCTTTCATCCCCAGAAGGTACACGGTAGTAATTATATTTACATTTGAATATGGAACGACCTTTCAACCCAAAAAGATTAGCATCTAATTATGGTTTGATTATCTTGGGATTTTCAGGTCCGAAAAGCAACCAACTGTCCCAAAAGATCCAAGGTTTCAATTTCCCCAGCAAAAGAAGATTAAATGCTGCGTTTCATGGAATGGACTGAATGATTATATCCATACAGCATCATGACTGGGAGAAGCTTAAACATAACAGTTTTAAAGAAAATTGAGTGTTGCCTATGCTTGAAGATGTGATCATTCTTTTATTCAATTTGGCGCTGTTCATAAAGATTTTTTTTTGTACTATTTTGTCGAAATATTAGAACATTATATTGCTCCAACTTTGCGCATCAAATGCTTCTCTATTTGAGCTTGGAGAAAGTTTCACTAACTATTTGTACACAAAATTTTACTATGTCCTTTCAATTTCACCATTCTGAAAATAAAAAAGTGACAAGTTACCCAAAGGAAATGCTTTATAGTTTCTTTTGTCCATGATCTCTTTATGAAAATGACTCAACTAATA CATAATCTGGATGGATTTACAATCTAACGGCTACCGAAAATTAATCAACAAAACTTCAAATTTTAATAATGCTAATTTGCCCCAAAATCGCATTTCTACAACAGGCTCCAAAAAACTAGCCGTTACGGAACTCCCGTATCCAACCAACGTTCACCTTATTCTCCCATTTTCTTTCCTTCTCAATTTCTCACTATCATCGCACAAAACCCATCTCTCCCTCTTTCGCTCTCTCCTACTCTCTCTATCATTTCCAGTTTAAGAAAGTAAAATGGCGACTCCAACAAGAGACGCACAAGGTGTTCGATTAAATGCCGCCGAGAATATAAAGAACCAGGAGAATTCAAACCCGAATTTGAAATCATCTCCTTTGATTAAATCCGCTAAAACACAAATGTCCGGGGTTAAAAACCCTAATCGTTCATTTATTTCACCCAAAAAGAAGATCAGGGAGAGGAAATTTGTGGTCGCGAAGAAGAATAATGCGAAGAAACAAGATATGAGTCGGAATTGTAAGTGTAAAGATAGGGTTAACGGGAAGTGTTTGTGTGTTGCATATGAGAATTTGAGGGTTTCTCAGGAGGACTTTTTTAAGAGTAGGGATGATACTGGGGTTGAGGAGTGTGAAGATTTTGATAAACCCAGAAGTAATGATGGTGGGGAATGTGAATTTAGGGGTTTGGAGGAAGTGGGTGGTTGTGATCCGGAGGCGGCCGAATCCCCAAAAGGGTTGGGAAGTTCAACAACGAAACGGAGGAGGGATATACTGTTGGAGGAAGCGAGGGCAAGTGTTCCGGAGTCGGGTTCAGGGAGGGTTTTGCATCTGGTGAAAGCGTTTGAGAGGCTGTTGACATTGCCTAAGAAATCGGATGGTGATCATAAAGATGATGATGATGAGGAGGAAGAGGATACAAAGAAAGAACTTAAATGGCCGTTGCCTGGATTGCAGCCGCAACCGCCTAGAGCTCCTGAGACCCAGGAATCATCGTCTGCATTTTGTCCTGGCGAATTGTTCTTTAATGCAGGATTCGATGCCCAAGTCTCTTCTTCATTGGATAGTAGCAGGGGAAGTGTTTCGAGCAGAAGTTCGGTTGGAAGTCGAAGAAGCAGAAGAAGTGGCTCATTTTCTTCTGGGACTGTTGGTGGAAGAAAGTGGACGAAGAAGGAACAGAAGAAAGTCACATCACTGAGACCATTCAGGCTTAGGACAGAGCAAAGAGGAAAAATGAAGGAGGAGGAGTTCGTAAAAAAATTACAAGAGATGATGATTGAAGAGGAGAAGCAGCGGATTCCTATTGCACAAGGCCTTCCATGGACAACTGATGAACCAGAGTGTCTGGTAAAACCAGCAATTAAAGATATCACAAGACCAATCGACCTGAAGCTGCACAGCGATGTTAGGGCTGTGGAGCGTGCAGAGTTTGACAACCAGGTGTGTGAAAAATTGACGTTGATAGAGCAATACAAACTGGAAAGAGAGAGGCAACAGAAGTTAGAAGAGGAAGAAGAAATAAGAAGATTAAGAAAGGAACTCGTCCCGAAAGCTCAGCCTATGCCTTACTTTGACCGACCTTTCATCCCCAGAAGGTCCGAAAAGCAACCAACTGTCCCAAAAGATCCAAGGTTTCAATTTCCCCAGCAAAAGAAGATTAAATGCTGCGTTTCATGGAATGGACTGAATGATTATATCCATACAGCATCATGACTGGGAGAAGCTTAAACATAACAGTTTTAAAGAAAATTGAGTGTTGCCTATGCTTGAAGATGTGATCATTCTTTTATTCAATTTGGCGCTGTTCATAAAGATTTTTTTTTGTACTATTTTGTCGAAATATTAGAACATTATATTGCTCCAACTTTGCGCATCAAATGCTTCTCTATTTGAGCTTGGAGAAAGTTTCACTAACTATTTGTACACAAAATTTTACTATGTCCTTTCAATTTCACCATTCTGAAAATAAAAAAGTGACAAGTTACCCAAAGGAAATGCTTTATAGTTTCTTTTGTCCATGATCTCTTTATGAAAATGACTCAACTAATA ATGGCGACTCCAACAAGAGACGCACAAGGTGTTCGATTAAATGCCGCCGAGAATATAAAGAACCAGGAGAATTCAAACCCGAATTTGAAATCATCTCCTTTGATTAAATCCGCTAAAACACAAATGTCCGGGGTTAAAAACCCTAATCGTTCATTTATTTCACCCAAAAAGAAGATCAGGGAGAGGAAATTTGTGGTCGCGAAGAAGAATAATGCGAAGAAACAAGATATGAGTCGGAATTGTAAGTGTAAAGATAGGGTTAACGGGAAGTGTTTGTGTGTTGCATATGAGAATTTGAGGGTTTCTCAGGAGGACTTTTTTAAGAGTAGGGATGATACTGGGGTTGAGGAGTGTGAAGATTTTGATAAACCCAGAAGTAATGATGGTGGGGAATGTGAATTTAGGGGTTTGGAGGAAGTGGGTGGTTGTGATCCGGAGGCGGCCGAATCCCCAAAAGGGTTGGGAAGTTCAACAACGAAACGGAGGAGGGATATACTGTTGGAGGAAGCGAGGGCAAGTGTTCCGGAGTCGGGTTCAGGGAGGGTTTTGCATCTGGTGAAAGCGTTTGAGAGGCTGTTGACATTGCCTAAGAAATCGGATGGTGATCATAAAGATGATGATGATGAGGAGGAAGAGGATACAAAGAAAGAACTTAAATGGCCGTTGCCTGGATTGCAGCCGCAACCGCCTAGAGCTCCTGAGACCCAGGAATCATCGTCTGCATTTTGTCCTGGCGAATTGTTCTTTAATGCAGGATTCGATGCCCAAGTCTCTTCTTCATTGGATAGTAGCAGGGGAAGTGTTTCGAGCAGAAGTTCGGTTGGAAGTCGAAGAAGCAGAAGAAGTGGCTCATTTTCTTCTGGGACTGTTGGTGGAAGAAAGTGGACGAAGAAGGAACAGAAGAAAGTCACATCACTGAGACCATTCAGGCTTAGGACAGAGCAAAGAGGAAAAATGAAGGAGGAGGAGTTCGTAAAAAAATTACAAGAGATGATGATTGAAGAGGAGAAGCAGCGGATTCCTATTGCACAAGGCCTTCCATGGACAACTGATGAACCAGAGTGTCTGGTAAAACCAGCAATTAAAGATATCACAAGACCAATCGACCTGAAGCTGCACAGCGATGTTAGGGCTGTGGAGCGTGCAGAGTTTGACAACCAGGTGTGTGAAAAATTGACGTTGATAGAGCAATACAAACTGGAAAGAGAGAGGCAACAGAAGTTAGAAGAGGAAGAAGAAATAAGAAGATTAAGAAAGGAACTCGTCCCGAAAGCTCAGCCTATGCCTTACTTTGACCGACCTTTCATCCCCAGAAGGTCCGAAAAGCAACCAACTGTCCCAAAAGATCCAAGGTTTCAATTTCCCCAGCAAAAGAAGATTAAATGCTGCGTTTCATGGAATGGACTGAATGATTATATCCATACAGCATCATGA MATPTRDAQGVRLNAAENIKNQENSNPNLKSSPLIKSAKTQMSGVKNPNRSFISPKKKIRERKFVVAKKNNAKKQDMSRNCKCKDRVNGKCLCVAYENLRVSQEDFFKSRDDTGVEECEDFDKPRSNDGGECEFRGLEEVGGCDPEAAESPKGLGSSTTKRRRDILLEEARASVPESGSGRVLHLVKAFERLLTLPKKSDGDHKDDDDEEEEDTKKELKWPLPGLQPQPPRAPETQESSSAFCPGELFFNAGFDAQVSSSLDSSRGSVSSRSSVGSRRSRRSGSFSSGTVGGRKWTKKEQKKVTSLRPFRLRTEQRGKMKEEEFVKKLQEMMIEEEKQRIPIAQGLPWTTDEPECLVKPAIKDITRPIDLKLHSDVRAVERAEFDNQVCEKLTLIEQYKLERERQQKLEEEEEIRRLRKELVPKAQPMPYFDRPFIPRRSEKQPTVPKDPRFQFPQQKKIKCCVSWNGLNDYIHTAS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20208.1 vs. NCBI nr
Match: gi|902178865|gb|KNA09237.1| (hypothetical protein SOVF_155390 [Spinacia oleracea]) HSP 1 Score: 922.5 bits (2383), Expect = 2.900e-265 Identity = 477/477 (100.00%), Postives = 477/477 (100.00%), Query Frame = 1
BLAST of Spo20208.1 vs. NCBI nr
Match: gi|731362982|ref|XP_010693183.1| (PREDICTED: uncharacterized protein LOC104906165 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 693.7 bits (1789), Expect = 2.200e-196 Identity = 375/490 (76.53%), Postives = 414/490 (84.49%), Query Frame = 1
BLAST of Spo20208.1 vs. NCBI nr
Match: gi|802715789|ref|XP_012084805.1| (PREDICTED: uncharacterized protein LOC105644144 [Jatropha curcas]) HSP 1 Score: 501.9 bits (1291), Expect = 1.200e-138 Identity = 297/504 (58.93%), Postives = 366/504 (72.62%), Query Frame = 1
BLAST of Spo20208.1 vs. NCBI nr
Match: gi|359489023|ref|XP_002279181.2| (PREDICTED: uncharacterized protein LOC100247426 isoform X4 [Vitis vinifera]) HSP 1 Score: 498.4 bits (1282), Expect = 1.400e-137 Identity = 298/496 (60.08%), Postives = 357/496 (71.98%), Query Frame = 1
BLAST of Spo20208.1 vs. NCBI nr
Match: gi|568858377|ref|XP_006482730.1| (PREDICTED: uncharacterized protein LOC102626710 [Citrus sinensis]) HSP 1 Score: 496.1 bits (1276), Expect = 6.700e-137 Identity = 297/507 (58.58%), Postives = 359/507 (70.81%), Query Frame = 1
BLAST of Spo20208.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPS0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_155390 PE=4 SV=1) HSP 1 Score: 922.5 bits (2383), Expect = 2.000e-265 Identity = 477/477 (100.00%), Postives = 477/477 (100.00%), Query Frame = 1
BLAST of Spo20208.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BGY4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g046370 PE=4 SV=1) HSP 1 Score: 693.7 bits (1789), Expect = 1.500e-196 Identity = 375/490 (76.53%), Postives = 414/490 (84.49%), Query Frame = 1
BLAST of Spo20208.1 vs. UniProtKB/TrEMBL
Match: A0A067JWT1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19922 PE=4 SV=1) HSP 1 Score: 501.9 bits (1291), Expect = 8.600e-139 Identity = 297/504 (58.93%), Postives = 366/504 (72.62%), Query Frame = 1
BLAST of Spo20208.1 vs. UniProtKB/TrEMBL
Match: F6H5N3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g01630 PE=4 SV=1) HSP 1 Score: 493.4 bits (1269), Expect = 3.000e-136 Identity = 298/498 (59.84%), Postives = 357/498 (71.69%), Query Frame = 1
BLAST of Spo20208.1 vs. UniProtKB/TrEMBL
Match: V4SAE5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011468mg PE=4 SV=1) HSP 1 Score: 492.7 bits (1267), Expect = 5.200e-136 Identity = 296/505 (58.61%), Postives = 357/505 (70.69%), Query Frame = 1
BLAST of Spo20208.1 vs. ExPASy Swiss-Prot
Match: TPX2_ARATH (Protein TPX2 OS=Arabidopsis thaliana GN=TPX2 PE=1 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 3.000e-12 Identity = 51/157 (32.48%), Postives = 91/157 (57.96%), Query Frame = 1
BLAST of Spo20208.1 vs. TAIR (Arabidopsis)
Match: AT3G01015.1 (TPX2 (targeting protein for Xklp2) protein family) HSP 1 Score: 382.5 bits (981), Expect = 3.800e-106 Identity = 255/495 (51.52%), Postives = 317/495 (64.04%), Query Frame = 1
BLAST of Spo20208.1 vs. TAIR (Arabidopsis)
Match: AT5G15510.2 (TPX2 (targeting protein for Xklp2) protein family) HSP 1 Score: 362.8 bits (930), Expect = 3.100e-100 Identity = 251/470 (53.40%), Postives = 308/470 (65.53%), Query Frame = 1
BLAST of Spo20208.1 vs. TAIR (Arabidopsis)
Match: AT5G37478.1 (TPX2 (targeting protein for Xklp2) protein family) HSP 1 Score: 90.5 bits (223), Expect = 3.000e-18 Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1
BLAST of Spo20208.1 vs. TAIR (Arabidopsis)
Match: AT1G03780.3 (targeting protein for XKLP2) HSP 1 Score: 74.7 bits (182), Expect = 1.700e-13 Identity = 51/157 (32.48%), Postives = 91/157 (57.96%), Query Frame = 1
BLAST of Spo20208.1 vs. TAIR (Arabidopsis)
Match: AT5G44270.1 (TPX2 (targeting protein for Xklp2) protein family) HSP 1 Score: 60.5 bits (145), Expect = 3.300e-9 Identity = 29/85 (34.12%), Postives = 55/85 (64.71%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20208.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20208.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20208.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo20208.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|