Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCAACTTTCTTGATTAATTATATTAAGCATGGCTATTTCTTCATCATCTAAGCTTAAGTTTCTTGTTGTTATTGTGAGTGTACTACTCGCTTTAGCTTCTACTAATACCGCCTTCGGTAGCAACTTCGATGTAGAGTTTGAACGAACTTTTGGTGATAATAGGGTCAAGACGTTTGGCCATGGTGGCCAAATCCTCTCCCTCTCCTTAGATAAATATTCTGGATCCGGGTTTCGCTCCAAGAAGGATTATGTGTTTGGGAGGTTCGATATGCAATTGAAACTTGTTCCTGGCGATTCTGCTGGCACTGTCACTACTCTTTATGTAAGGATCATTCTCGTTTTAGTAACTTGTTTTAGTAACTCATTTTATGTAACCATTCTCGTTTAGCTATAGTACGTAACTCGTTTTACGTAAACATTCTCGTTTTAGGAACTCATTTGATGTAATTAACCATATCATTCTAACTAGTAACTCGTTTTAATAACTCATTTTATGTATACCGTATCATATATTCTAGCAACTGATTTGATGTAACCCTATCATTCTAGCTAGTAACTCGTTTTAGTAACTCATTTTACGTAACCATATCATTCTAGCTAGTACTAACTCGTTTTAATTAGTACTGTAATCATTTTATATCATTCTTGTTTTTGTGTCGCAATTTTCTGATTCTAGTACGAATTGATGTTTTTGTAGTTGTCATCCGATCAAAGCACGGGTACACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTAAGCGGACAGCCATACACCATCCACACTAATGTGTTTAGCCAAGGGAAAGGCAACAGGGAGCAGCAATTCCATCTTTGGTTTGATCCTACTAAGAACTTCCACACCTATTCCATCGTTTGGAACACAAAACTCATCATGTAAGCCATGCATAACGCCCGGAGTACTAATTAAATCACCTAGAATAATAATTTTAAACACAACTTTAAGGGATAAAAAGGTAACATCTCCCATTCACACATAATATATGGATAAATTACAACTATATAACAAATTTAAAAGCCACGGACGAAAGTGATTATATATGTATGTAACTTAAATATCTCCCATTCACACATAATAATATATGGATAAATTAGAACTATGTAACAAATTTAAAAGCCACGGACGAAAGTGATTATGTATGTAACTTAAATCAGGTTACGTTAGTTCACCTTATTTTCACTTATTTCAGGAAAAATAAATTTAGATAAGTTTAGTTAAGTTCTTACAAGCTTAAATTCAGTACAATTAAGTTCAGATAATATAAGTTCAGACAAGCTAGATAAGTGAAATCAGGTGATAGAATGCACCCTTATACAGTCTAACTATCGGGAGAACTATGGAGATATAGGCCGGGTCGGGATACATTCCTCCCTCAACCACCCCCTAAATATAGTATTCCCTCCGCTCCTTAATGATGTTCTAATTTAGAACTTTGACACTACTTACAATTGAAGAGAATTAATCTTCAAAATTATGTCTGACACATAAGAAAAACGTATTTATGTGGGTACTTGTTTGATTCGTCTCAATTTTACTTTAAAATTCTATAATCTTTGCTAATAAATAACTAGAGATATAAATGATACAAAATGTGCAATGAAAAACATGAATTAAAAGCAGCAATCGAAACATCATTATGAAATAGGAGTAGTAGTATAGTACGTGCGTAGGAGGTGACGAGGTTTTCAATTACCTTATGCAGCTCATGCATGCATGGGATAAACTTTTACTCTCCTTTTCCGAATACTCGCAACACTTAATTGCCTGAGTGTGTAACTTGTTTTTGCTATATTTAATGTCGTAGTATTGCAAAGTTGGTAATTAACTAACTTTTAATTTGGATGTTTTAGGTTCTTGGTTGATGAAACACCATTAAGAGTATTCCGAAACCACGAAGATATTGGTGTTTCTTTCCCAAAGAACCAACCCATGAAGATATACTCTAGCTTATGGAACGCCGATGATTGGGCTACTCAAGGTGGTTTGGTTAAGACCGATTGGTCTAAGGCTCCCTTCACGGCCTATTATCGTAACTTCAACATAGACAGCACCACCCCTAGAGCCGCTAGGGCTGATGCATCCGCCGTTACAACAATGTCAACCAATGGGAAGACGACACTTGGTGCATGGAGAACACATGATCTTGATGCATGGGGTAGAAGGAGATTGAGATGGGTTCAAAAGTACTTTATGATTTATAATTATTGCGCAGATTTGAAACGTTTCTCTCAAGGTTTTCCTCTTGAATGCAAGCATTCGCGCTTTTAGTTTGGACCTAATTAAGTTTGTTGATCGATCAATAGTTGGGTATTTATTAATATTTCTTTGTTTAATGATGAATTGAAATCCTCTACCCACAATTTGTTTAATGTGCCACCATGTTGTTAATCGGATAATTTGTTCTTATGTTATGTTTATGTAAGTGGGTTTAATTTATTCTCTTTCCATTTTCTTTGCCTTTTTGGTGATTCAATTGTGCTCACTTATCGTAATACACGTACGGTTGTTTTAGGAAAGTTTGAGGATAATAGTGGCAGATCTTGGCAAAAGTACTTCCTCCGTCCCATATTAGTTGTTACACTTTTCGTTTTCGTCCGTCT CCAACTTTCTTGATTAATTATATTAAGCATGGCTATTTCTTCATCATCTAAGCTTAAGTTTCTTGTTGTTATTGTGAGTGTACTACTCGCTTTAGCTTCTACTAATACCGCCTTCGGTAGCAACTTCGATGTAGAGTTTGAACGAACTTTTGGTGATAATAGGGTCAAGACGTTTGGCCATGGTGGCCAAATCCTCTCCCTCTCCTTAGATAAATATTCTGGATCCGGGTTTCGCTCCAAGAAGGATTATGTGTTTGGGAGGTTCGATATGCAATTGAAACTTGTTCCTGGCGATTCTGCTGGCACTGTCACTACTCTTTATTTGTCATCCGATCAAAGCACGGGTACACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTAAGCGGACAGCCATACACCATCCACACTAATGTGTTTAGCCAAGGGAAAGGCAACAGGGAGCAGCAATTCCATCTTTGGTTTGATCCTACTAAGAACTTCCACACCTATTCCATCGTTTGGAACACAAAACTCATCATGTTCTTGGTTGATGAAACACCATTAAGAGTATTCCGAAACCACGAAGATATTGGTGTTTCTTTCCCAAAGAACCAACCCATGAAGATATACTCTAGCTTATGGAACGCCGATGATTGGGCTACTCAAGGTGGTTTGGTTAAGACCGATTGGTCTAAGGCTCCCTTCACGGCCTATTATCGTAACTTCAACATAGACAGCACCACCCCTAGAGCCGCTAGGGCTGATGCATCCGCCGTTACAACAATGTCAACCAATGGGAAGACGACACTTGGTGCATGGAGAACACATGATCTTGATGCATGGGGTAGAAGGAGATTGAGATGGGTTCAAAAGTACTTTATGATTTATAATTATTGCGCAGATTTGAAACGTTTCTCTCAAGGTTTTCCTCTTGAATGCAAGCATTCGCGCTTTTAGTTTGGACCTAATTAAGTTTGTTGATCGATCAATAGTTGGGTATTTATTAATATTTCTTTGTTTAATGATGAATTGAAATCCTCTACCCACAATTTGTTTAATGTGCCACCATGTTGTTAATCGGATAATTTGTTCTTATGTTATGTTTATGTAAGTGGGTTTAATTTATTCTCTTTCCATTTTCTTTGCCTTTTTGGTGATTCAATTGTGCTCACTTATCGTAATACACGTACGGTTGTTTTAGGAAAGTTTGAGGATAATAGTGGCAGATCTTGGCAAAAGTACTTCCTCCGTCCCATATTAGTTGTTACACTTTTCGTTTTCGTCCGTCT ATGGCTATTTCTTCATCATCTAAGCTTAAGTTTCTTGTTGTTATTGTGAGTGTACTACTCGCTTTAGCTTCTACTAATACCGCCTTCGGTAGCAACTTCGATGTAGAGTTTGAACGAACTTTTGGTGATAATAGGGTCAAGACGTTTGGCCATGGTGGCCAAATCCTCTCCCTCTCCTTAGATAAATATTCTGGATCCGGGTTTCGCTCCAAGAAGGATTATGTGTTTGGGAGGTTCGATATGCAATTGAAACTTGTTCCTGGCGATTCTGCTGGCACTGTCACTACTCTTTATTTGTCATCCGATCAAAGCACGGGTACACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTAAGCGGACAGCCATACACCATCCACACTAATGTGTTTAGCCAAGGGAAAGGCAACAGGGAGCAGCAATTCCATCTTTGGTTTGATCCTACTAAGAACTTCCACACCTATTCCATCGTTTGGAACACAAAACTCATCATGTTCTTGGTTGATGAAACACCATTAAGAGTATTCCGAAACCACGAAGATATTGGTGTTTCTTTCCCAAAGAACCAACCCATGAAGATATACTCTAGCTTATGGAACGCCGATGATTGGGCTACTCAAGGTGGTTTGGTTAAGACCGATTGGTCTAAGGCTCCCTTCACGGCCTATTATCGTAACTTCAACATAGACAGCACCACCCCTAGAGCCGCTAGGGCTGATGCATCCGCCGTTACAACAATGTCAACCAATGGGAAGACGACACTTGGTGCATGGAGAACACATGATCTTGATGCATGGGGTAGAAGGAGATTGAGATGGGTTCAAAAGTACTTTATGATTTATAATTATTGCGCAGATTTGAAACGTTTCTCTCAAGGTTTTCCTCTTGAATGCAAGCATTCGCGCTTTTAG MAISSSSKLKFLVVIVSVLLALASTNTAFGSNFDVEFERTFGDNRVKTFGHGGQILSLSLDKYSGSGFRSKKDYVFGRFDMQLKLVPGDSAGTVTTLYLSSDQSTGTHDEIDFEFLGNVSGQPYTIHTNVFSQGKGNREQQFHLWFDPTKNFHTYSIVWNTKLIMFLVDETPLRVFRNHEDIGVSFPKNQPMKIYSSLWNADDWATQGGLVKTDWSKAPFTAYYRNFNIDSTTPRAARADASAVTTMSTNGKTTLGAWRTHDLDAWGRRRLRWVQKYFMIYNYCADLKRFSQGFPLECKHSRF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20188.1 vs. NCBI nr
Match: gi|902172867|gb|KNA08179.1| (hypothetical protein SOVF_164970 [Spinacia oleracea]) HSP 1 Score: 624.0 bits (1608), Expect = 1.400e-175 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of Spo20188.1 vs. NCBI nr
Match: gi|731325102|ref|XP_010673331.1| (PREDICTED: brassinosteroid-regulated protein BRU1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 451.8 bits (1161), Expect = 9.300e-124 Identity = 219/309 (70.87%), Postives = 253/309 (81.88%), Query Frame = 1
BLAST of Spo20188.1 vs. NCBI nr
Match: gi|870863867|gb|KMT15014.1| (hypothetical protein BVRB_3g065180 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 444.1 bits (1141), Expect = 1.900e-121 Identity = 205/298 (68.79%), Postives = 252/298 (84.56%), Query Frame = 1
BLAST of Spo20188.1 vs. NCBI nr
Match: gi|731325100|ref|XP_010673330.1| (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 16 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 441.4 bits (1134), Expect = 1.300e-120 Identity = 202/288 (70.14%), Postives = 244/288 (84.72%), Query Frame = 1
BLAST of Spo20188.1 vs. NCBI nr
Match: gi|902218725|gb|KNA18117.1| (hypothetical protein SOVF_073730 [Spinacia oleracea]) HSP 1 Score: 438.7 bits (1127), Expect = 8.100e-120 Identity = 212/309 (68.61%), Postives = 247/309 (79.94%), Query Frame = 1
BLAST of Spo20188.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLQ2_SPIOL (Xyloglucan endotransglucosylase/hydrolase OS=Spinacia oleracea GN=SOVF_164970 PE=3 SV=1) HSP 1 Score: 624.0 bits (1608), Expect = 9.500e-176 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of Spo20188.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CMS2_BETVU (Xyloglucan endotransglucosylase/hydrolase OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g065190 PE=3 SV=1) HSP 1 Score: 451.8 bits (1161), Expect = 6.500e-124 Identity = 219/309 (70.87%), Postives = 253/309 (81.88%), Query Frame = 1
BLAST of Spo20188.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CSK3_BETVU (Xyloglucan endotransglucosylase/hydrolase OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g065180 PE=3 SV=1) HSP 1 Score: 444.1 bits (1141), Expect = 1.300e-121 Identity = 205/298 (68.79%), Postives = 252/298 (84.56%), Query Frame = 1
BLAST of Spo20188.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH21_SPIOL (Xyloglucan endotransglucosylase/hydrolase OS=Spinacia oleracea GN=SOVF_073730 PE=3 SV=1) HSP 1 Score: 438.7 bits (1127), Expect = 5.700e-120 Identity = 212/309 (68.61%), Postives = 247/309 (79.94%), Query Frame = 1
BLAST of Spo20188.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWW5_SPIOL (Xyloglucan endotransglucosylase/hydrolase OS=Spinacia oleracea GN=SOVF_137580 PE=3 SV=1) HSP 1 Score: 429.5 bits (1103), Expect = 3.400e-117 Identity = 207/297 (69.70%), Postives = 243/297 (81.82%), Query Frame = 1
BLAST of Spo20188.1 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2) HSP 1 Score: 382.9 bits (982), Expect = 3.300e-105 Identity = 186/289 (64.36%), Postives = 228/289 (78.89%), Query Frame = 1
BLAST of Spo20188.1 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1) HSP 1 Score: 376.7 bits (966), Expect = 2.400e-103 Identity = 188/291 (64.60%), Postives = 228/291 (78.35%), Query Frame = 1
BLAST of Spo20188.1 vs. ExPASy Swiss-Prot
Match: XTH2_SOYBN (Xyloglucan endotransglucosylase/hydrolase 2 OS=Glycine max PE=2 SV=1) HSP 1 Score: 375.2 bits (962), Expect = 6.900e-103 Identity = 188/299 (62.88%), Postives = 229/299 (76.59%), Query Frame = 1
BLAST of Spo20188.1 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1) HSP 1 Score: 333.6 bits (854), Expect = 2.300e-90 Identity = 163/287 (56.79%), Postives = 215/287 (74.91%), Query Frame = 1
BLAST of Spo20188.1 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2) HSP 1 Score: 332.8 bits (852), Expect = 3.900e-90 Identity = 161/291 (55.33%), Postives = 207/291 (71.13%), Query Frame = 1
BLAST of Spo20188.1 vs. TAIR (Arabidopsis)
Match: AT3G23730.1 (xyloglucan endotransglucosylase/hydrolase 16) HSP 1 Score: 382.9 bits (982), Expect = 1.900e-106 Identity = 186/289 (64.36%), Postives = 228/289 (78.89%), Query Frame = 1
BLAST of Spo20188.1 vs. TAIR (Arabidopsis)
Match: AT4G14130.1 (xyloglucan endotransglucosylase/hydrolase 15) HSP 1 Score: 376.7 bits (966), Expect = 1.300e-104 Identity = 188/291 (64.60%), Postives = 228/291 (78.35%), Query Frame = 1
BLAST of Spo20188.1 vs. TAIR (Arabidopsis)
Match: AT5G57560.1 (Xyloglucan endotransglucosylase/hydrolase family protein) HSP 1 Score: 333.6 bits (854), Expect = 1.300e-91 Identity = 163/287 (56.79%), Postives = 215/287 (74.91%), Query Frame = 1
BLAST of Spo20188.1 vs. TAIR (Arabidopsis)
Match: AT5G57550.1 (xyloglucan endotransglucosylase/hydrolase 25) HSP 1 Score: 332.8 bits (852), Expect = 2.200e-91 Identity = 161/291 (55.33%), Postives = 207/291 (71.13%), Query Frame = 1
BLAST of Spo20188.1 vs. TAIR (Arabidopsis)
Match: AT4G30270.1 (xyloglucan endotransglucosylase/hydrolase 24) HSP 1 Score: 330.5 bits (846), Expect = 1.100e-90 Identity = 165/291 (56.70%), Postives = 209/291 (71.82%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20188.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20188.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20188.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo20188.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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