Spo20152 (gene)

Overview
NameSpo20152
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionF-box family protein
LocationSuper_scaffold_170 : 490035 .. 491245 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGTACAACATGTAACCAGTATCACGAACTGAAAAATATGAATGCTCAATTACTTTAGAAATGGAAACCAGAAAAAAGAAAGAATGAAAATAAGAGGTGAAGAAATGAAATTTTTTGGCGGTGAAGAATGAATGAAAATAAGAGGTGAAGAATGGAAAAAAGATCAGTAAATGTTTGGCGGGAAAATAAAAGTGGATAGTATGGCGCAATTTCATCCCGCCTAACAGATGCGAATGGCGCAAATGGCTGAAATATTTTGCCGCCCATTATCTTCCTTTCTGAAATTTTTTCCCTCTTTTTTTAGTGAAATTTGTGACTTGACATCATTTAATTGGTGGTGTGCAAGATACCTTTGCACACCAAGTATATCCCTAGCCTTTTCCAGATGTCTAAGTTATTAGTGGAAGTTGAGGAGGCTAAATTAATTTTGGTCTAACTCAAGAATTGTCCTGTTGTTGGAAAAACTGGAAACCCGTGAGACAAGTGATATTGCCCATGCCCCCTCTTTTCCACACAAGACACAACCTTCGTCCCCACCTTTTTGCTCTCACACAGTCTCTCTCCCTATTATCTCCACAACTTTTACTCTTCTCCCACCATTAAACTCAAGCTTCCCCATCAAACCAGTCTCCCACCATGAAGCGAGCCATGAACTCCCAACCCGAATCCGAATCAGAATCCACTATCAATCCCGCAATAAACACCAAAAAACCCAAATTCGCCTCCAATCCCGATCAAACCATCCCTAATAATAATCACGATCAACAATTCCACGATTCCGATTGCGATTCGGAATTCGCAAAGCTAGACGAGAATCTACTCTACGAAGTATTCAAGCACGCCGATGCGAAAACCCTAGCTGTAGCATCATGCGTCAGCAAGCGGTGGCATCGGACGGCTCAGGATGAGCGACTATGGGAGCTGATCTGTACTCGCCATTGGAGTAACAGTATTAATTACGGTACGAGACAACTCAGATCTGTTGTTCTTGCTCTGGGTGGGTTTCGTCGTCTTCACGCGCTTTACCTCTCCAAAACCGTCCCCTCTATGCCGGGTTCGCCGATTCTGCCGCCATCTTCGTCGATTCAGGCGCGTGTTGTCAAGGGTGGGAATAAGAGATGGGGGAAGGATGAGGTTAATTTGTCATTATCTCTTCTCTCGATTAGATATTATGAGAAAATGAATTTGGCTAACAAGAGACCATGA

mRNA sequence

ATGTCAAGTACAACATCTTCCCCATCAAACCAGTCTCCCACCATGAAGCGAGCCATGAACTCCCAACCCGAATCCGAATCAGAATCCACTATCAATCCCGCAATAAACACCAAAAAACCCAAATTCGCCTCCAATCCCGATCAAACCATCCCTAATAATAATCACGATCAACAATTCCACGATTCCGATTGCGATTCGGAATTCGCAAAGCTAGACGAGAATCTACTCTACGAAGTATTCAAGCACGCCGATGCGAAAACCCTAGCTGTAGCATCATGCGTCAGCAAGCGGTGGCATCGGACGGCTCAGGATGAGCGACTATGGGAGCTGATCTGTACTCGCCATTGGAGTAACAGTATTAATTACGGTACGAGACAACTCAGATCTGTTGTTCTTGCTCTGGGTGGGTTTCGTCGTCTTCACGCGCTTTACCTCTCCAAAACCGTCCCCTCTATGCCGGGTTCGCCGATTCTGCCGCCATCTTCGTCGATTCAGGCGCGTGTTGTCAAGGGTGGGAATAAGAGATGGGGGAAGGATGAGGTTAATTTGTCATTATCTCTTCTCTCGATTAGATATTATGAGAAAATGAATTTGGCTAACAAGAGACCATGA

Coding sequence (CDS)

ATGTCAAGTACAACATCTTCCCCATCAAACCAGTCTCCCACCATGAAGCGAGCCATGAACTCCCAACCCGAATCCGAATCAGAATCCACTATCAATCCCGCAATAAACACCAAAAAACCCAAATTCGCCTCCAATCCCGATCAAACCATCCCTAATAATAATCACGATCAACAATTCCACGATTCCGATTGCGATTCGGAATTCGCAAAGCTAGACGAGAATCTACTCTACGAAGTATTCAAGCACGCCGATGCGAAAACCCTAGCTGTAGCATCATGCGTCAGCAAGCGGTGGCATCGGACGGCTCAGGATGAGCGACTATGGGAGCTGATCTGTACTCGCCATTGGAGTAACAGTATTAATTACGGTACGAGACAACTCAGATCTGTTGTTCTTGCTCTGGGTGGGTTTCGTCGTCTTCACGCGCTTTACCTCTCCAAAACCGTCCCCTCTATGCCGGGTTCGCCGATTCTGCCGCCATCTTCGTCGATTCAGGCGCGTGTTGTCAAGGGTGGGAATAAGAGATGGGGGAAGGATGAGGTTAATTTGTCATTATCTCTTCTCTCGATTAGATATTATGAGAAAATGAATTTGGCTAACAAGAGACCATGA

Protein sequence

MSSTTSSPSNQSPTMKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLALGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYEKMNLANKRP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20152.1Spo20152.1mRNA


Homology
[Close]
BLAST of Spo20152.1 vs. NCBI nr
Match: gi|902038256|gb|KNA02713.1| (hypothetical protein SOVF_216090 [Spinacia oleracea])

HSP 1 Score: 381.3 bits (978), Expect = 1.000e-102
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

		  

Query: 15  MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN 74
           MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN
Sbjct: 1   MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN 60

Query: 75  LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL 134
           LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL
Sbjct: 61  LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL 120

Query: 135 GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE 194
           GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE
Sbjct: 121 GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE 180

Query: 195 KMNLANKRP 204
           KMNLANKRP
Sbjct: 181 KMNLANKRP 189
[Close]
BLAST of Spo20152.1 vs. NCBI nr
Match: gi|731378781|ref|XP_010668269.1| (PREDICTED: F-box protein GID2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 224.2 bits (570), Expect = 2.100e-55
Identity = 126/193 (65.28%), Postives = 138/193 (71.50%), Query Frame = 1 

		  

Query: 15  MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFH---DSDCDSEFAKL 74
           MKR+M SQP+           N+KK KF   PDQ     +         D DCDSEFAKL
Sbjct: 1   MKRSMASQPDLPHTPK-----NSKKLKFKQIPDQIDAKTDEHIMISPQIDFDCDSEFAKL 60

Query: 75  DENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQL--RS 134
           DENLLYEVFKH DAKTLA+ASCVSK+WHRT  DERLWE+ICTRHWSNS N  T+QL  RS
Sbjct: 61  DENLLYEVFKHTDAKTLAIASCVSKQWHRTGNDERLWEMICTRHWSNSSNCSTQQLRTRS 120

Query: 135 VVLALGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLS 194
           VVLALGGFRRL+ALYLSKT P+ P          +QARVVKGG K WGKDEVNLSL LLS
Sbjct: 121 VVLALGGFRRLYALYLSKTAPTAP---------PMQARVVKGGGKSWGKDEVNLSLCLLS 179

Query: 195 IRYYEKMNLANKR 203
           I Y+EKMNLANKR
Sbjct: 181 IGYFEKMNLANKR 179
[Close]
BLAST of Spo20152.1 vs. NCBI nr
Match: gi|702383882|ref|XP_010064165.1| (PREDICTED: F-box protein GID2 [Eucalyptus grandis])

HSP 1 Score: 172.2 bits (435), Expect = 9.500e-40
Identity = 90/135 (66.67%), Postives = 102/135 (75.56%), Query Frame = 1 

		  

Query: 68  FAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQL 127
           FA LDE+LL+EV KHADA+TLA+A+CVSK WHRTAQDERLWELICTRHW N I  G +QL
Sbjct: 88  FAHLDEDLLFEVLKHADARTLAMAACVSKLWHRTAQDERLWELICTRHWPN-IGCGNQQL 147

Query: 128 RSVVLALGGFRRLHALYLSKTVPSMPGS-----PILPPSSSIQARVVKGGNKRWGKDEVN 187
           RSVVLALGGF+RLH+LYL  +    PGS     P LPP   ++ +       RWGKDEVN
Sbjct: 148 RSVVLALGGFKRLHSLYLPLSKQQQPGSASAWAPPLPPMMGVKPQT------RWGKDEVN 207

Query: 188 LSLSLLSIRYYEKMN 198
           L LSLLSIR YEKMN
Sbjct: 208 LFLSLLSIRCYEKMN 215
[Close]
BLAST of Spo20152.1 vs. NCBI nr
Match: gi|359492001|ref|XP_002285053.2| (PREDICTED: F-box protein GID2 [Vitis vinifera])

HSP 1 Score: 170.6 bits (431), Expect = 2.800e-39
Identity = 95/169 (56.21%), Postives = 109/169 (64.50%), Query Frame = 1 

		  

Query: 47  DQTIPNNNHDQQFHDSDCDSE---FAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQ 106
           DQ + N   +    D +   E   F  LDENLLYEV KH DA+TLA+A CVSK WHRT+Q
Sbjct: 15  DQKMKNPKLEDDEEDGEVRGETTGFVNLDENLLYEVLKHVDARTLAIAGCVSKLWHRTSQ 74

Query: 107 DERLWELICTRHWSNSINYGTRQLRSVVLALGGFRRLHALYLSKTVPSMPGSPILPPSSS 166
           DERLWELICTRHW+N I  G +Q+RSVVLALGGFRRLH+LYL         S   PPSSS
Sbjct: 75  DERLWELICTRHWAN-IGCGNQQVRSVVLALGGFRRLHSLYLWPLSKPQASSSSSPPSSS 134

Query: 167 IQARVVKGG-----------NKRWGKDEVNLSLSLLSIRYYEKMNLANK 202
             +  +                RWGKDEV+LSLSLLSIRYYEKMN  N+
Sbjct: 135 WPSTALSPPFAPHSMMRPKFPTRWGKDEVHLSLSLLSIRYYEKMNFNNR 182
[Close]
BLAST of Spo20152.1 vs. NCBI nr
Match: gi|309256353|gb|ADO61004.1| (sleepy 1 [Helianthus annuus])

HSP 1 Score: 168.7 bits (426), Expect = 1.000e-38
Identity = 90/147 (61.22%), Postives = 100/147 (68.03%), Query Frame = 1 

		  

Query: 71  LDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSV 130
           LDENLLYEV KH DA+TL  A CVSK+WHRTAQDERLWELICT+HW+N I  G  QLRSV
Sbjct: 32  LDENLLYEVLKHVDARTLGAAGCVSKQWHRTAQDERLWELICTKHWAN-IGCGNTQLRSV 91

Query: 131 VLALGGFRRLHALYL---------------SKTVPSMPGSPILPPSSSIQARVVKGGNKR 190
           VLALGGFRRLH+ YL               S TV +    P LPP  +I          R
Sbjct: 92  VLALGGFRRLHSHYLWPLSKPSSSAATSSSSSTVATTSSWPCLPPPRAI-VPAKPTAKAR 151

Query: 191 WGKDEVNLSLSLLSIRYYEKMNLANKR 203
           WGKDEV LSLSLLSIRYYEKMN +N++
Sbjct: 152 WGKDEVQLSLSLLSIRYYEKMNFSNRK 176
[Close]
BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7P7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_216090 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 7.200e-103
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

		  

Query: 15  MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN 74
           MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN
Sbjct: 1   MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN 60

Query: 75  LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL 134
           LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL
Sbjct: 61  LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL 120

Query: 135 GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE 194
           GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE
Sbjct: 121 GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE 180

Query: 195 KMNLANKRP 204
           KMNLANKRP
Sbjct: 181 KMNLANKRP 189
[Close]
BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DV96_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015500 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.500e-55
Identity = 126/193 (65.28%), Postives = 138/193 (71.50%), Query Frame = 1 

		  

Query: 15  MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFH---DSDCDSEFAKL 74
           MKR+M SQP+           N+KK KF   PDQ     +         D DCDSEFAKL
Sbjct: 1   MKRSMASQPDLPHTPK-----NSKKLKFKQIPDQIDAKTDEHIMISPQIDFDCDSEFAKL 60

Query: 75  DENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQL--RS 134
           DENLLYEVFKH DAKTLA+ASCVSK+WHRT  DERLWE+ICTRHWSNS N  T+QL  RS
Sbjct: 61  DENLLYEVFKHTDAKTLAIASCVSKQWHRTGNDERLWEMICTRHWSNSSNCSTQQLRTRS 120

Query: 135 VVLALGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLS 194
           VVLALGGFRRL+ALYLSKT P+ P          +QARVVKGG K WGKDEVNLSL LLS
Sbjct: 121 VVLALGGFRRLYALYLSKTAPTAP---------PMQARVVKGGGKSWGKDEVNLSLCLLS 179

Query: 195 IRYYEKMNLANKR 203
           I Y+EKMNLANKR
Sbjct: 181 IGYFEKMNLANKR 179
[Close]
BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Match: F6GZW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g09700 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.900e-39
Identity = 95/169 (56.21%), Postives = 109/169 (64.50%), Query Frame = 1 

		  

Query: 47  DQTIPNNNHDQQFHDSDCDSE---FAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQ 106
           DQ + N   +    D +   E   F  LDENLLYEV KH DA+TLA+A CVSK WHRT+Q
Sbjct: 15  DQKMKNPKLEDDEEDGEVRGETTGFVNLDENLLYEVLKHVDARTLAIAGCVSKLWHRTSQ 74

Query: 107 DERLWELICTRHWSNSINYGTRQLRSVVLALGGFRRLHALYLSKTVPSMPGSPILPPSSS 166
           DERLWELICTRHW+N I  G +Q+RSVVLALGGFRRLH+LYL         S   PPSSS
Sbjct: 75  DERLWELICTRHWAN-IGCGNQQVRSVVLALGGFRRLHSLYLWPLSKPQASSSSSPPSSS 134

Query: 167 IQARVVKGG-----------NKRWGKDEVNLSLSLLSIRYYEKMNLANK 202
             +  +                RWGKDEV+LSLSLLSIRYYEKMN  N+
Sbjct: 135 WPSTALSPPFAPHSMMRPKFPTRWGKDEVHLSLSLLSIRYYEKMNFNNR 182
[Close]
BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Match: E3TPZ6_HELAN (Sleepy 1 OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.300e-39
Identity = 90/147 (61.22%), Postives = 100/147 (68.03%), Query Frame = 1 

		  

Query: 71  LDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSV 130
           LDENLLYEV KH DA+TL  A CVSK+WHRTAQDERLWELICT+HW+N I  G  QLRSV
Sbjct: 32  LDENLLYEVLKHVDARTLGAAGCVSKQWHRTAQDERLWELICTKHWAN-IGCGNTQLRSV 91

Query: 131 VLALGGFRRLHALYL---------------SKTVPSMPGSPILPPSSSIQARVVKGGNKR 190
           VLALGGFRRLH+ YL               S TV +    P LPP  +I          R
Sbjct: 92  VLALGGFRRLHSHYLWPLSKPSSSAATSSSSSTVATTSSWPCLPPPRAI-VPAKPTAKAR 151

Query: 191 WGKDEVNLSLSLLSIRYYEKMNLANKR 203
           WGKDEV LSLSLLSIRYYEKMN +N++
Sbjct: 152 WGKDEVQLSLSLLSIRYYEKMNFSNRK 176
[Close]
BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Match: E3TPZ5_HELAN (Sleepy 1 OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.300e-39
Identity = 90/147 (61.22%), Postives = 100/147 (68.03%), Query Frame = 1 

		  

Query: 71  LDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSV 130
           LDENLLYEV KH DA+TL  A CVSK+WHRTAQDERLWELICT+HW+N I  G  QLRSV
Sbjct: 32  LDENLLYEVLKHVDARTLGAAGCVSKQWHRTAQDERLWELICTKHWAN-IGCGNTQLRSV 91

Query: 131 VLALGGFRRLHALYL---------------SKTVPSMPGSPILPPSSSIQARVVKGGNKR 190
           VLALGGFRRLH+ YL               S TV +    P LPP  +I          R
Sbjct: 92  VLALGGFRRLHSHYLWPLSKPSSSAATSSSSSTVATTSSWPCLPPPRAI-VPAKPTAKAR 151

Query: 191 WGKDEVNLSLSLLSIRYYEKMNLANKR 203
           WGKDEV LSLSLLSIRYYEKMN +N++
Sbjct: 152 WGKDEVQLSLSLLSIRYYEKMNFSNRK 176
[Close]
BLAST of Spo20152.1 vs. ExPASy Swiss-Prot
Match: GID2_ARATH (F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.600e-37
Identity = 85/136 (62.50%), Postives = 98/136 (72.06%), Query Frame = 1 

		  

Query: 68  FAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQL 127
           F+ LDENL+YEV KH DAKTLA++SCVSK WH+TAQDERLWELICTRHW+N I  G  QL
Sbjct: 32  FSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTN-IGCGQNQL 91

Query: 128 RSVVLALGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSL 187
           RSVVLALGGFRRLH+LYL          P+  P+             R+GKDE+ L+LSL
Sbjct: 92  RSVVLALGGFRRLHSLYL---------WPLSKPNP----------RARFGKDELKLTLSL 146

Query: 188 LSIRYYEKMNLANKRP 204
           LSIRYYEKM+   KRP
Sbjct: 152 LSIRYYEKMSF-TKRP 146
[Close]
BLAST of Spo20152.1 vs. ExPASy Swiss-Prot
Match: GID2_ORYSJ (F-box protein GID2 OS=Oryza sativa subsp. japonica GN=GID2 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.200e-23
Identity = 65/162 (40.12%), Postives = 95/162 (58.64%), Query Frame = 1 

		  

Query: 43  ASNPDQTIPNNNHDQQFHDSDCDSEFAK---LDENLLYEVFKHADAKTLAVASCVSKRWH 102
           AS+  Q  P    ++Q  +   + E  +   L E+L++EV + A+A+TLA A+CVS+ W 
Sbjct: 45  ASSSSQPPPQQQQEEQPPEDAGEGEQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWR 104

Query: 103 RTAQDERLWELICTRHWSNSINYGTRQLRSVVLALGGFRRLHALYLSKTVPSMPGSPILP 162
           + A+DERLWE  C R W+N + +  RQLR+VVL+LGGFRRLHA+Y+        G+ +  
Sbjct: 105 QLAEDERLWEAACVREWAN-LGFSERQLRAVVLSLGGFRRLHAVYIRPL--QWRGAGVPR 164

Query: 163 PSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYEKMNLANK 202
                Q  V      R G+D+V LSLSL SI +++ M    K
Sbjct: 165 QQGRRQPPV------RLGRDQVQLSLSLFSIGFFQNMPCPKK 197
[Close]
BLAST of Spo20152.1 vs. ExPASy Swiss-Prot
Match: SNE_ARATH (F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.300e-9
Identity = 37/123 (30.08%), Postives = 61/123 (49.59%), Query Frame = 1 

		  

Query: 74  NLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLA 133
           ++L E+ +  D  +L  A+CV + W   A+++ +WE +C R  S      +  LRSVV A
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR---PSLSLRSVVSA 92

Query: 134 LGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYY 193
           LGG+R L+ L +   +  +P                      W +D++ LSLSL  + YY
Sbjct: 93  LGGYRCLYFLCIRPVLARLP-------------------KLLWTRDQLQLSLSLYCVHYY 133

Query: 194 EKM 197
           E++
Sbjct: 153 ERL 133
[Close]
BLAST of Spo20152.1 vs. TAIR (Arabidopsis)
Match: AT4G24210.1 (F-box family protein)

HSP 1 Score: 156.8 bits (395), Expect = 1.500e-38
Identity = 85/136 (62.50%), Postives = 98/136 (72.06%), Query Frame = 1 

		  

Query: 68  FAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQL 127
           F+ LDENL+YEV KH DAKTLA++SCVSK WH+TAQDERLWELICTRHW+N I  G  QL
Sbjct: 32  FSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTN-IGCGQNQL 91

Query: 128 RSVVLALGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSL 187
           RSVVLALGGFRRLH+LYL          P+  P+             R+GKDE+ L+LSL
Sbjct: 92  RSVVLALGGFRRLHSLYL---------WPLSKPNP----------RARFGKDELKLTLSL 146

Query: 188 LSIRYYEKMNLANKRP 204
           LSIRYYEKM+   KRP
Sbjct: 152 LSIRYYEKMSF-TKRP 146
[Close]
BLAST of Spo20152.1 vs. TAIR (Arabidopsis)
Match: AT5G48170.1 (F-box family protein)

HSP 1 Score: 64.7 bits (156), Expect = 7.500e-11
Identity = 37/123 (30.08%), Postives = 61/123 (49.59%), Query Frame = 1 

		  

Query: 74  NLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLA 133
           ++L E+ +  D  +L  A+CV + W   A+++ +WE +C R  S      +  LRSVV A
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR---PSLSLRSVVSA 92

Query: 134 LGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYY 193
           LGG+R L+ L +   +  +P                      W +D++ LSLSL  + YY
Sbjct: 93  LGGYRCLYFLCIRPVLARLP-------------------KLLWTRDQLQLSLSLYCVHYY 133

Query: 194 EKM 197
           E++
Sbjct: 153 ERL 133
The following BLAST results are available for this feature:
BLAST of Spo20152.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902038256|gb|KNA02713.1|1.0e-102100.hypothetical protein SOVF_2160... [more]
gi|731378781|ref|XP_010668269.1|2.1e-5565.2PREDICTED: F-box protein GID2-... [more]
gi|702383882|ref|XP_010064165.1|9.5e-4066.6PREDICTED: F-box protein GID2 ... [more]
gi|359492001|ref|XP_002285053.2|2.8e-3956.2PREDICTED: F-box protein GID2 ... [more]
gi|309256353|gb|ADO61004.1|1.0e-3861.2sleepy 1 [Helianthus annuus][more]
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BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q7P7_SPIOL7.2e-103100.Uncharacterized protein OS=Spi... [more]
A0A0J8DV96_BETVU1.5e-5565.2Uncharacterized protein OS=Bet... [more]
F6GZW7_VITVI1.9e-3956.2Putative uncharacterized prote... [more]
E3TPZ6_HELAN7.3e-3961.2Sleepy 1 OS=Helianthus annuus ... [more]
E3TPZ5_HELAN7.3e-3961.2Sleepy 1 OS=Helianthus annuus ... [more]
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BLAST of Spo20152.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GID2_ARATH2.6e-3762.5F-box protein GID2 OS=Arabidop... [more]
GID2_ORYSJ6.2e-2340.1F-box protein GID2 OS=Oryza sa... [more]
SNE_ARATH1.3e-930.0F-box protein SNE OS=Arabidops... [more]
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BLAST of Spo20152.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G24210.11.5e-3862.5F-box family protein[more]
AT5G48170.17.5e-1130.0F-box family protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 75..114
score: 4.
IPR001810F-box domainSMARTSM00256fbox_2coord: 71..111
score: 3.
IPR001810F-box domainPROFILEPS50181FBOXcoord: 65..111
score: 9
IPR001810F-box domainunknownSSF81383F-box domaincoord: 61..126
score: 1.28
NoneNo IPR availableGENE3D1.20.1280.50coord: 70..122
score: 1.7
NoneNo IPR availablePANTHERPTHR12874FAMILY NOT NAMEDcoord: 69..145
score: 6.4
NoneNo IPR availablePANTHERPTHR12874:SF10SUBFAMILY NOT NAMEDcoord: 69..145
score: 6.4

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048444 floral organ morphogenesis
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016311 dephosphorylation
biological_process GO:0016036 cellular response to phosphate starvation
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0009657 plastid organization
biological_process GO:0010206 photosystem II repair
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0006979 response to oxidative stress
biological_process GO:0030091 protein repair
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006464 cellular protein modification process
biological_process GO:0042538 hyperosmotic salinity response
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0010286 heat acclimation
biological_process GO:0019375 galactolipid biosynthetic process
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0009052 pentose-phosphate shunt, non-oxidative branch
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0006569 tryptophan catabolic process
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0019748 secondary metabolic process
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0009409 response to cold
biological_process GO:0010200 response to chitin
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0043900 regulation of multi-organism process
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0016310 phosphorylation
biological_process GO:0000165 MAPK cascade
biological_process GO:0009106 lipoate metabolic process
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0009684 indoleacetic acid biosynthetic process
biological_process GO:0006546 glycine catabolic process
biological_process GO:0009595 detection of biotic stimulus
biological_process GO:0050832 defense response to fungus
biological_process GO:0009108 coenzyme biosynthetic process
biological_process GO:0015976 carbon utilization
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0042432 indole biosynthetic process
biological_process GO:0006508 proteolysis
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0010227 floral organ abscission
biological_process GO:0010162 seed dormancy process
biological_process GO:0009723 response to ethylene
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0006560 proline metabolic process
biological_process GO:0048481 plant ovule development
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:0006526 arginine biosynthetic process
biological_process GO:0015979 photosynthesis
biological_process GO:0009863 salicylic acid mediated signaling pathway
biological_process GO:0050896 response to stimulus
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009845 seed germination
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006479 protein methylation
biological_process GO:0046500 S-adenosylmethionine metabolic process
biological_process GO:2000037 regulation of stomatal complex patterning
biological_process GO:0006468 protein phosphorylation
biological_process GO:0015824 proline transport
biological_process GO:0009626 plant-type hypersensitive response
biological_process GO:0010229 inflorescence development
biological_process GO:0009737 response to abscisic acid
biological_process GO:0006591 ornithine metabolic process
biological_process GO:0006412 translation
biological_process GO:0009555 pollen development
biological_process GO:0009744 response to sucrose
biological_process GO:0009749 response to glucose
biological_process GO:0009750 response to fructose
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0006007 glucose catabolic process
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0009939 positive regulation of gibberellic acid mediated signaling pathway
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0010325 raffinose family oligosaccharide biosynthetic process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005777 peroxisome
cellular_component GO:0009507 chloroplast
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005829 cytosol
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
cellular_component GO:0009348 ornithine carbamoyltransferase complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0019005 SCF ubiquitin ligase complex
cellular_component GO:0005634 nucleus
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0044464 cell part
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0044425 membrane part
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009506 plasmodesma
molecular_function GO:0005515 protein binding
molecular_function GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0016866 intramolecular transferase activity
molecular_function GO:0016853 isomerase activity
molecular_function GO:0008430 selenium binding
molecular_function GO:0008113 peptide-methionine (S)-S-oxide reductase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004585 ornithine carbamoyltransferase activity
molecular_function GO:0016597 amino acid binding
molecular_function GO:0003993 acid phosphatase activity
molecular_function GO:0016746 transferase activity, transferring acyl groups
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003919 FMN adenylyltransferase activity
molecular_function GO:0008967 phosphoglycolate phosphatase activity
molecular_function GO:0008531 riboflavin kinase activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0010181 FMN binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016844 strictosidine synthase activity
molecular_function GO:0004751 ribose-5-phosphate isomerase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo280580.82Barchart | Table
Spo239070.78Barchart | Table
Spo119610.78Barchart | Table
Spo133930.76Barchart | Table
Spo146780.76Barchart | Table
Spo208690.76Barchart | Table
Spo025730.75Barchart | Table
Spo050730.75Barchart | Table
Spo153720.74Barchart | Table
Spo029320.74Barchart | Table
Spo060040.74Barchart | Table
Spo108640.74Barchart | Table
Spo184000.74Barchart | Table
Spo004980.73Barchart | Table
Spo270810.73Barchart | Table
Spo142250.72Barchart | Table
Spo046530.72Barchart | Table
Spo261170.72Barchart | Table
Spo074760.72Barchart | Table
Spo051350.72Barchart | Table
Spo092900.72Barchart | Table
Spo251590.72Barchart | Table
Spo136910.72Barchart | Table
Spo123700.72Barchart | Table
Spo216600.71Barchart | Table
Spo181950.71Barchart | Table
Spo095540.71Barchart | Table
Spo130290.71Barchart | Table
Spo283240.71Barchart | Table
Spo208490.70Barchart | Table
Spo062930.70Barchart | Table
Spo086540.70Barchart | Table
Spo089350.70Barchart | Table
Spo131930.70Barchart | Table
Spo176120.69Barchart | Table
Spo006670.69Barchart | Table
Spo054310.69Barchart | Table
Spo175780.68Barchart | Table
Spo008720.68Barchart | Table
Spo092020.68Barchart | Table
Spo097690.68Barchart | Table
Spo205210.68Barchart | Table
Spo205440.68Barchart | Table
Spo211550.68Barchart | Table
Spo228110.68Barchart | Table
Spo240460.68Barchart | Table
Spo281860.68Barchart | Table
Spo248570.67Barchart | Table
Spo102350.67Barchart | Table
Spo149440.67Barchart | Table
Spo087890.67Barchart | Table
Spo244250.67Barchart | Table
Spo045360.66Barchart | Table
Spo209460.66Barchart | Table
Spo212150.66Barchart | Table
Spo037570.66Barchart | Table
Spo014260.66Barchart | Table
Spo162130.66Barchart | Table
Spo156390.66Barchart | Table
Spo188280.66Barchart | Table
Spo268580.66Barchart | Table
Spo072360.66Barchart | Table
Spo171610.66Barchart | Table
Spo043830.65Barchart | Table
Spo247160.65Barchart | Table
Spo143420.65Barchart | Table
Spo172500.65Barchart | Table