Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAATTAATTTGGCTAAAATTAATTTGACTATTGTGTTCATCAAACCTTGATGATAACGCTAGAATTTTCAAGTTTAACTTCTCCGCAGTACTTTTCTCCCGCGACTACTCCATATTCCACAACACACCCTTTTGTATCTTCCCATCCTCCAGATCCCGACAACAACAACAACAACAATGTCCAACAAATTCACCATCCCGCCGGTGTCCTTTCCATCGTCAGGACCGTCAGCATCAACCGCGTCCACCACTCCCGGTCCCGGCGGTCGCAACCCACCGGGCATGCTCCATCAACGGCAAGTCCCAACCGCACCGTTTCAACCACCACGTCCCTCCTCCCTCCCTTTCATGTCTTTTGACATCGGATCCGCCGCCGCCTCTTCATCTTCCACCTCCTTCCCACCTCCACAACTCCGCCAGGACATCGCCTCCTCCTCCGGCGGCCTCTTCTCTGACGAAATCCCTCTCCTGGAAGAACTCGAGATCAACCCATCCCTAATCTGGCGCAAAACTCGCTCCTTACTCAACCCATTCCGAGTGGATTCATCCCTCCACTCTGATCCCGACCTCTCCGGGCCCTTCCTTTACTACATCGCCTTCGGATTGTTCCAATTACTTGGCGGCAAAGTTCAATTCGGCGTTATCTTAGGCTGGATTGCGATCTCCTCCATTTTTGTTTACTCGATCTTGAACTTTCTGGCTGGTAAAAATGGGAATTTGGATTTGTATCGGTGTTTCAGCGTGGTTGGATATTGTTTGATGCCAATTGTAATCTACTCTGCTGCCTCACTCTTTCTCCCTCCTACCGGAACTACTGTTGGGTTTATTGTTGCTGCAGCTTTCGTGATTTGGTCAACTAGGGTTTGCTCTCGTCTTTTGGCGGTCGATGAATTGGGAGCTTCCGAACACCGTGGGTTGATTGCTTATCCTTGTTTCTTGATTTACTGTCTGTTTTCTATGCTTGTTATGTTTTGATTGAATACTTGGTATTATTGTTGTTGTTGATGTCGGAATACAACAATGTATGTCTTTGTAAGTGTCGAATTAGTATGATCAATGTCACTCTTGCCATTATGATTCTTTGGTTGTTTAACTTTCGGATTGGCTGAGGAGTGAAACCGTTCTCTTTTGCTTGGGTTGCATTGCTGATTATTTGACGTGCATTTATTCTTTTTACCTATAGGACGACACTGAATGTACTGGAATTTGCCAGATTTTCATATCATTGCAATCTTATACACTAGTCTGAAGTTTGTCAATTTTGGAGAGACAAGGTGTGAAATTCTGCCTGAAAAATTATGTGATCTTTGTTTAATTTTAGCTCTCTTCTCTGAAATGTAGGCGAGTTTTGGTTTGATTTGGATGGAAAAGAAGGAAAGGAAATCGCTTTTATTATGTTACCACCGGTCTTATAGACCGATTGATTAAAATGGTAAGAACCTAGTTAAAGGGCTAGATTGATTAAAATGCTTCTTGGGGTTTTCTTATTGGGTAGGTTGTCATTATATTCTTTTTGCTGTAAGTGTAGAGGGTATGTTAGTAATTCAAGGGGGACA AAAAAAATTAATTTGGCTAAAATTAATTTGACTATTGTGTTCATCAAACCTTGATGATAACGCTAGAATTTTCAAGTTTAACTTCTCCGCAGTACTTTTCTCCCGCGACTACTCCATATTCCACAACACACCCTTTTGTATCTTCCCATCCTCCAGATCCCGACAACAACAACAACAACAATGTCCAACAAATTCACCATCCCGCCGGTGTCCTTTCCATCGTCAGGACCGTCAGCATCAACCGCGTCCACCACTCCCGGTCCCGGCGGTCGCAACCCACCGGGCATGCTCCATCAACGGCAAGTCCCAACCGCACCGTTTCAACCACCACGTCCCTCCTCCCTCCCTTTCATGTCTTTTGACATCGGATCCGCCGCCGCCTCTTCATCTTCCACCTCCTTCCCACCTCCACAACTCCGCCAGGACATCGCCTCCTCCTCCGGCGGCCTCTTCTCTGACGAAATCCCTCTCCTGGAAGAACTCGAGATCAACCCATCCCTAATCTGGCGCAAAACTCGCTCCTTACTCAACCCATTCCGAGTGGATTCATCCCTCCACTCTGATCCCGACCTCTCCGGGCCCTTCCTTTACTACATCGCCTTCGGATTGTTCCAATTACTTGGCGGCAAAGTTCAATTCGGCGTTATCTTAGGCTGGATTGCGATCTCCTCCATTTTTGTTTACTCGATCTTGAACTTTCTGGCTGGTAAAAATGGGAATTTGGATTTGTATCGGTGTTTCAGCGTGGTTGGATATTGTTTGATGCCAATTGTAATCTACTCTGCTGCCTCACTCTTTCTCCCTCCTACCGGAACTACTGTTGGGTTTATTGTTGCTGCAGCTTTCGTGATTTGGTCAACTAGGGTTTGCTCTCGTCTTTTGGCGGTCGATGAATTGGGAGCTTCCGAACACCGCGAGTTTTGGTTTGATTTGGATGGAAAAGAAGGAAAGGAAATCGCTTTTATTATGTTACCACCGGTCTTATAGACCGATTGATTAAAATGGTAAGAACCTAGTTAAAGGGCTAGATTGATTAAAATGCTTCTTGGGGTTTTCTTATTGGGTAGGTTGTCATTATATTCTTTTTGCTGTAAGTGTAGAGGGTATGTTAGTAATTCAAGGGGGACA ATGTCCAACAAATTCACCATCCCGCCGGTGTCCTTTCCATCGTCAGGACCGTCAGCATCAACCGCGTCCACCACTCCCGGTCCCGGCGGTCGCAACCCACCGGGCATGCTCCATCAACGGCAAGTCCCAACCGCACCGTTTCAACCACCACGTCCCTCCTCCCTCCCTTTCATGTCTTTTGACATCGGATCCGCCGCCGCCTCTTCATCTTCCACCTCCTTCCCACCTCCACAACTCCGCCAGGACATCGCCTCCTCCTCCGGCGGCCTCTTCTCTGACGAAATCCCTCTCCTGGAAGAACTCGAGATCAACCCATCCCTAATCTGGCGCAAAACTCGCTCCTTACTCAACCCATTCCGAGTGGATTCATCCCTCCACTCTGATCCCGACCTCTCCGGGCCCTTCCTTTACTACATCGCCTTCGGATTGTTCCAATTACTTGGCGGCAAAGTTCAATTCGGCGTTATCTTAGGCTGGATTGCGATCTCCTCCATTTTTGTTTACTCGATCTTGAACTTTCTGGCTGGTAAAAATGGGAATTTGGATTTGTATCGGTGTTTCAGCGTGGTTGGATATTGTTTGATGCCAATTGTAATCTACTCTGCTGCCTCACTCTTTCTCCCTCCTACCGGAACTACTGTTGGGTTTATTGTTGCTGCAGCTTTCGTGATTTGGTCAACTAGGGTTTGCTCTCGTCTTTTGGCGGTCGATGAATTGGGAGCTTCCGAACACCGCGAGTTTTGGTTTGATTTGGATGGAAAAGAAGGAAAGGAAATCGCTTTTATTATGTTACCACCGGTCTTATAG MSNKFTIPPVSFPSSGPSASTASTTPGPGGRNPPGMLHQRQVPTAPFQPPRPSSLPFMSFDIGSAAASSSSTSFPPPQLRQDIASSSGGLFSDEIPLLEELEINPSLIWRKTRSLLNPFRVDSSLHSDPDLSGPFLYYIAFGLFQLLGGKVQFGVILGWIAISSIFVYSILNFLAGKNGNLDLYRCFSVVGYCLMPIVIYSAASLFLPPTGTTVGFIVAAAFVIWSTRVCSRLLAVDELGASEHREFWFDLDGKEGKEIAFIMLPPVL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20047.1 vs. NCBI nr
Match: gi|902162752|gb|KNA06727.1| (hypothetical protein SOVF_178330 [Spinacia oleracea]) HSP 1 Score: 477.6 bits (1228), Expect = 1.400e-131 Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 1
BLAST of Spo20047.1 vs. NCBI nr
Match: gi|902164780|gb|KNA07004.1| (hypothetical protein SOVF_175890 [Spinacia oleracea]) HSP 1 Score: 457.6 bits (1176), Expect = 1.500e-125 Identity = 235/246 (95.53%), Postives = 239/246 (97.15%), Query Frame = 1
BLAST of Spo20047.1 vs. NCBI nr
Match: gi|731340470|ref|XP_010681411.1| (PREDICTED: protein YIPF5 homolog [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 390.2 bits (1001), Expect = 2.900e-105 Identity = 206/245 (84.08%), Postives = 218/245 (88.98%), Query Frame = 1
BLAST of Spo20047.1 vs. NCBI nr
Match: gi|729470243|ref|XP_010527322.1| (PREDICTED: protein YIPF5 homolog isoform X1 [Tarenaya hassleriana]) HSP 1 Score: 258.5 bits (659), Expect = 1.300e-65 Identity = 143/252 (56.75%), Postives = 174/252 (69.05%), Query Frame = 1
BLAST of Spo20047.1 vs. NCBI nr
Match: gi|225464142|ref|XP_002265566.1| (PREDICTED: protein YIPF5 homolog [Vitis vinifera]) HSP 1 Score: 253.4 bits (646), Expect = 4.300e-64 Identity = 136/247 (55.06%), Postives = 173/247 (70.04%), Query Frame = 1
BLAST of Spo20047.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QHJ1_SPIOL (Protein YIPF OS=Spinacia oleracea GN=SOVF_178330 PE=3 SV=1) HSP 1 Score: 477.6 bits (1228), Expect = 9.700e-132 Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 1
BLAST of Spo20047.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QID2_SPIOL (Protein YIPF OS=Spinacia oleracea GN=SOVF_175890 PE=3 SV=1) HSP 1 Score: 457.6 bits (1176), Expect = 1.000e-125 Identity = 235/246 (95.53%), Postives = 239/246 (97.15%), Query Frame = 1
BLAST of Spo20047.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4H8_BETVU (Protein YIPF OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g141340 PE=3 SV=1) HSP 1 Score: 390.2 bits (1001), Expect = 2.000e-105 Identity = 206/245 (84.08%), Postives = 218/245 (88.98%), Query Frame = 1
BLAST of Spo20047.1 vs. UniProtKB/TrEMBL
Match: F6HVQ5_VITVI (Protein YIPF OS=Vitis vinifera GN=VIT_13s0106g00730 PE=3 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 3.000e-64 Identity = 136/247 (55.06%), Postives = 173/247 (70.04%), Query Frame = 1
BLAST of Spo20047.1 vs. UniProtKB/TrEMBL
Match: V4M7H3_EUTSA (Protein YIPF OS=Eutrema salsugineum GN=EUTSA_v10017131mg PE=3 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 6.600e-64 Identity = 136/249 (54.62%), Postives = 171/249 (68.67%), Query Frame = 1
BLAST of Spo20047.1 vs. ExPASy Swiss-Prot
Match: YIPF5_DICDI (Protein YIPF5 homolog OS=Dictyostelium discoideum GN=yipf5 PE=3 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 3.100e-22 Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 1
BLAST of Spo20047.1 vs. ExPASy Swiss-Prot
Match: YIPF7_BOVIN (Protein YIPF7 OS=Bos taurus GN=YIPF7 PE=2 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 7.600e-21 Identity = 70/190 (36.84%), Postives = 107/190 (56.32%), Query Frame = 1
BLAST of Spo20047.1 vs. ExPASy Swiss-Prot
Match: YIPF7_MOUSE (Protein YIPF7 OS=Mus musculus GN=Yipf7 PE=2 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 4.200e-19 Identity = 70/211 (33.18%), Postives = 109/211 (51.66%), Query Frame = 1
BLAST of Spo20047.1 vs. ExPASy Swiss-Prot
Match: YIPF5_MACFA (Protein YIPF5 OS=Macaca fascicularis GN=YIPF5 PE=2 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 4.200e-19 Identity = 56/148 (37.84%), Postives = 91/148 (61.49%), Query Frame = 1
BLAST of Spo20047.1 vs. ExPASy Swiss-Prot
Match: YIPF5_PONAB (Protein YIPF5 OS=Pongo abelii GN=YIPF5 PE=2 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 5.500e-19 Identity = 56/148 (37.84%), Postives = 91/148 (61.49%), Query Frame = 1
BLAST of Spo20047.1 vs. TAIR (Arabidopsis)
Match: AT2G36300.1 (Integral membrane Yip1 family protein) HSP 1 Score: 248.4 bits (633), Expect = 4.900e-66 Identity = 135/249 (54.22%), Postives = 169/249 (67.87%), Query Frame = 1
BLAST of Spo20047.1 vs. TAIR (Arabidopsis)
Match: AT3G52760.1 (Integral membrane Yip1 family protein) HSP 1 Score: 236.1 bits (601), Expect = 2.500e-62 Identity = 130/255 (50.98%), Postives = 167/255 (65.49%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20047.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20047.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20047.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo20047.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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