Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACAAGATTATACAAAGTTCTGGACAATTCTACCGTAATCAACCCTTACCAAATTCAAAAATACCCAAATTATCCTACAAAAAAATCCTCCCACATAAACCCCCCCTCGTCCTTCTCTTTTCTTCCCCTCTCTGAAACAAACAAACCTCCTCTCATCCTCTTTCTCTCTCCTACGTGGCGTCCTCTGCGTTTTTTCTTGCTATCTCTCTAAAAAAAAAGTTGCATATTTGTCTCCTATGTGTTTGTGAGCAAAATTGAGCTGAAGTTTTTGGTGATTTTTCCATTTGGTTGTTGTGAAATTTGAGATCGAAGATTTTTGAAGTTTTTAGTTGTTGATTCGATGCCTTGCTCATCGTCTACTATGGTTACTCAAGTAAGTTTTTATCTAGATTTGAGATATCTATGCGATTCATTTCTATTTTAGATGTCGTATGACTTGTGATTAATGAATTTAGTATGTTGTTTGGGAAATGAAATTATTACGGGTAACTTTCCATTTATGAGCTGAAATCATTGTGTTTTGACAAAATTAGGGAAATTGATTGATTTCCAAATCTATTTGTTGGAATCGAAGAATTATGCTATGTTGTTTTTGGTAATGGAATGAATTATTCTTTTGTTCATTTTGTCAAATTGAACAGTTGTCTAGGTGTTTTTGGTGAAGTAAACATGGATATAACTACAAATAGCATAATCAATTTTGTTATTTTGCAATTGATTGTTTTTGGATTTGATTTTTGTAAGTTGTAAATAGCGTTGTGGAAGGTTGCTTAAGGCTTGCTTAAGGTTAATTAGTATATTGATTATGTTGGAGCGTGTGTCGGTACTCGGGTGTTCGCTAATTTCGTGTTGTGTTATCTGTTTATATGATTGAGAATTTGTGTTGATTCTGAATCATATATACAGATTGAGATTTCTACCAACTGTGTTTATGGCCGGAGATGTTGTCTGTGGTAATTCTATGTTGAATTTTCAATTATATGATTGAGAATTTAGTTGATTCGTACCGTTTTATGAACGGAGTTGTTGGTGTCGGATACTGATGTTAAATGTTATTGAACTTTATCAGGAGGAGACTAGTGTTGCTCAATCCGATTCAGGAAATAGGAATTCATCGGTTGCCGGAGCGCAGACCGGTGTAGGAGAAGGCCAAATTCCTAAGGTTTTGGTCATTTCTCTGCCTTTTACTATGTGGCTCCTCAATTAGGGATCACTGATTACAGAACTGAGTTGTTCAGTGTGCCTTACTCTTCTTCTGTCCTATTTCCTTATATGAAACAGATTCGCAAGCCGTATACTATAACAAAGCAAAGGGAAAGATGGACAGAAGAAGAGCATAAGAAATTCCTTGAAGCTCTAAAACTGTATGGCCGAGCTTGGAGAAAGATAGAGGGTAGGTTTTCAAGAATATGATATTGATAATTTCAAGGATTTTGAAATGATGTGCTTGCTAAGATGCTAATTTACTTGTTCTTGTGTTCAGATCATGTTGGATCCAAAACGGCAGTCCAAATCCGCAGCCATGCTCAGAAGTTCTTTTCAAAGGTCCATTGCCCACTCTTTACCCTTGGTTGAAGTAAGTTGTTGTCTGTGACCTCGAAGACGTGTGAACGTACTTTGAAAGGTCAGATTCAATTGCTTCTTGTATCTGATCCGTCTTTGTGTTTTTAATGTTCAGGTTGTTCGGGAAACAAATAACAGTAATGCAAATTCAGTAGCTGATCCCATTGAGATACCACCACCCCGTCCTAAGAGAAAGCCGTCACACCCATACCCTCGGAAACTTGTACTTCCATCCAGAAAAGACATGCCAATGGAGCAGGGATCAAGATCTGTATCTCCAAACTCTTCACTCTCTGAGCAAGAGAATCAGTCCCCTACTTCAGTTTTGTCTGCTGCCGCCTCGGATATGCTAGCATCTGCAGATTCAGCTGCACCCAAAAGCAGCCCATCCCCTGTATCTTCAGGCAATTTTGGTGACCAAGTTGCAAAATTGCAGTCTGAAGATAATGCACCTCAGGGGGAAGTGCAGGAGTCTAAATCTGGATCTACTGTTCCAGCTTCAGTGGTACTGAATTAATCACTTGTTTGTATAGTGAATTGTGTTTTAGAATTACTACATTTTGGAGGTTTCATATTAACCTGAATGTATTTTGATGTGCAGAAATTGGAACTTTTTCCAGTTAAGGAGTCAGTTCACAAGGAAGAATCAGCTTGCACAAAGGTCCTTAAACTATTTGGAAAAGATGTAGTAGTCCCAGGAAACCCGGAATCATTTACGAGCTTGAGCAAGTCTCCCTCATTAGATATGGGGGAAGGAGTTCTCCAGGCAGGTCCAGAAGATTTCCAGGCTGCCGATAACTCAGTGAGAATTGTTGGAAATGCGCAGGATCATATGAAATTTTATTATGTGGATAAAAATGCAAACCAGGTAGAAAAACCGACACCTCTGCCATGGTGGGTTTTCTTCAGAGGGATGTCAGTTCCTCCATTTGTGGAAACCCAAGAGAAGGAAACTCAGCGAGAGGGATCTTCTGGAGAATCAAATAGCGATTCAGTTAATGGAGGAGAAACTCAGGATAAGAATTGGGAAACAGAAACGGAGTCTGGCCAATGCGGTCCAGTGTCAGACAAAGAAATTAAGTTTGTTGAGGATTCACCCAGTTTGATTGAGAAGAGAAGTAGCGTTGACAAGTGCAGAAAGGGATTTGTTCCTTATAAAAGATGCCTTTCGGAGAGAGACATGGAATCGACCATAGGCAGTGAAGATAGAGAAAGTCAAAGAGTTCGACTTTGCTTGTAGCAACATATGACATATCCCCTAGTGAAGTTTCCTTATTTAGATTAGCTCAACATTTATAACTATCCAGACTGAAAAACCCAGTTGAGATTGGGAATCAGTACAGTCATATACTTCCTATGTAGTAATTATGGTTGCGGCATGACTATAATACGAGGTTTGATACGAGGTTTGATCATCTAACCACCTCCGAGGTGAGTGGCTGTATAAAGTGGATGGCCACTCAAAGGCTCCTCAAAAGTGAAAACGAGCTTGGTGGTTCTGCATCTAAAACACTTTTTTTTTTCTTTTTAACTTGCTGGATCTTTGACCTTTGTATTTTTTTCTTCTAGTGTTCAGGTTTCCCACAGTTCCTAATTTCCTATTTTTTCTTTGGGAGATTTGTATTCTGGGTCTTGTATTATAGGGTCATTGTTTCATTTTTTCCCTTTCCTTTCCCTTGATTGGGGTTTATGAACTGTGAATTAGTATGATAATTGTTCAAATATTTTGTATGAAATCATGATTGTTACACATATAAATGGTGGATGGATCTGATATTTTGGGTT ACAAGATTATACAAAGTTCTGGACAATTCTACCGTAATCAACCCTTACCAAATTCAAAAATACCCAAATTATCCTACAAAAAAATCCTCCCACATAAACCCCCCCTCGTCCTTCTCTTTTCTTCCCCTCTCTGAAACAAACAAACCTCCTCTCATCCTCTTTCTCTCTCCTACGTGGCGTCCTCTGCGTTTTTTCTTGCTATCTCTCTAAAAAAAAAGTTGCATATTTGTCTCCTATGTGTTTGTGAGCAAAATTGAGCTGAAGTTTTTGGTGATTTTTCCATTTGGTTGTTGTGAAATTTGAGATCGAAGATTTTTGAAGTTTTTAGTTGTTGATTCGATGCCTTGCTCATCGTCTACTATGGTTACTCAAGAGGAGACTAGTGTTGCTCAATCCGATTCAGGAAATAGGAATTCATCGGTTGCCGGAGCGCAGACCGGTGTAGGAGAAGGCCAAATTCCTAAGATTCGCAAGCCGTATACTATAACAAAGCAAAGGGAAAGATGGACAGAAGAAGAGCATAAGAAATTCCTTGAAGCTCTAAAACTGTATGGCCGAGCTTGGAGAAAGATAGAGGATCATGTTGGATCCAAAACGGCAGTCCAAATCCGCAGCCATGCTCAGAAGTTCTTTTCAAAGGTTGTTCGGGAAACAAATAACAGTAATGCAAATTCAGTAGCTGATCCCATTGAGATACCACCACCCCGTCCTAAGAGAAAGCCGTCACACCCATACCCTCGGAAACTTGTACTTCCATCCAGAAAAGACATGCCAATGGAGCAGGGATCAAGATCTGTATCTCCAAACTCTTCACTCTCTGAGCAAGAGAATCAGTCCCCTACTTCAGTTTTGTCTGCTGCCGCCTCGGATATGCTAGCATCTGCAGATTCAGCTGCACCCAAAAGCAGCCCATCCCCTGTATCTTCAGGCAATTTTGGTGACCAAGTTGCAAAATTGCAGTCTGAAGATAATGCACCTCAGGGGGAAGTGCAGGAGTCTAAATCTGGATCTACTGTTCCAGCTTCAGTGAAATTGGAACTTTTTCCAGTTAAGGAGTCAGTTCACAAGGAAGAATCAGCTTGCACAAAGGTCCTTAAACTATTTGGAAAAGATGTAGTAGTCCCAGGAAACCCGGAATCATTTACGAGCTTGAGCAAGTCTCCCTCATTAGATATGGGGGAAGGAGTTCTCCAGGCAGGTCCAGAAGATTTCCAGGCTGCCGATAACTCAGTGAGAATTGTTGGAAATGCGCAGGATCATATGAAATTTTATTATGTGGATAAAAATGCAAACCAGGTAGAAAAACCGACACCTCTGCCATGGTGGGTTTTCTTCAGAGGGATGTCAGTTCCTCCATTTGTGGAAACCCAAGAGAAGGAAACTCAGCGAGAGGGATCTTCTGGAGAATCAAATAGCGATTCAGTTAATGGAGGAGAAACTCAGGATAAGAATTGGGAAACAGAAACGGAGTCTGGCCAATGCGGTCCAGTGTCAGACAAAGAAATTAAGTTTGTTGAGGATTCACCCAGTTTGATTGAGAAGAGAAGTAGCGTTGACAAGTGCAGAAAGGGATTTGTTCCTTATAAAAGATGCCTTTCGGAGAGAGACATGGAATCGACCATAGGCAGTGAAGATAGAGAAAGTCAAAGAGTTCGACTTTGCTTGTAGCAACATATGACATATCCCCTAGTGAAGTTTCCTTATTTAGATTAGCTCAACATTTATAACTATCCAGACTGAAAAACCCAGTTGAGATTGGGAATCAGTACAGTCATATACTTCCTATGTAGTAATTATGGTTGCGGCATGACTATAATACGAGGTTTGATACGAGGTTTGATCATCTAACCACCTCCGAGGTGAGTGGCTGTATAAAGTGGATGGCCACTCAAAGGCTCCTCAAAAGTGAAAACGAGCTTGGTGGTTCTGCATCTAAAACACTTTTTTTTTTCTTTTTAACTTGCTGGATCTTTGACCTTTGTATTTTTTTCTTCTAGTGTTCAGGTTTCCCACAGTTCCTAATTTCCTATTTTTTCTTTGGGAGATTTGTATTCTGGGTCTTGTATTATAGGGTCATTGTTTCATTTTTTCCCTTTCCTTTCCCTTGATTGGGGTTTATGAACTGTGAATTAGTATGATAATTGTTCAAATATTTTGTATGAAATCATGATTGTTACACATATAAATGGTGGATGGATCTGATATTTTGGGTT ATGCCTTGCTCATCGTCTACTATGGTTACTCAAGAGGAGACTAGTGTTGCTCAATCCGATTCAGGAAATAGGAATTCATCGGTTGCCGGAGCGCAGACCGGTGTAGGAGAAGGCCAAATTCCTAAGATTCGCAAGCCGTATACTATAACAAAGCAAAGGGAAAGATGGACAGAAGAAGAGCATAAGAAATTCCTTGAAGCTCTAAAACTGTATGGCCGAGCTTGGAGAAAGATAGAGGATCATGTTGGATCCAAAACGGCAGTCCAAATCCGCAGCCATGCTCAGAAGTTCTTTTCAAAGGTTGTTCGGGAAACAAATAACAGTAATGCAAATTCAGTAGCTGATCCCATTGAGATACCACCACCCCGTCCTAAGAGAAAGCCGTCACACCCATACCCTCGGAAACTTGTACTTCCATCCAGAAAAGACATGCCAATGGAGCAGGGATCAAGATCTGTATCTCCAAACTCTTCACTCTCTGAGCAAGAGAATCAGTCCCCTACTTCAGTTTTGTCTGCTGCCGCCTCGGATATGCTAGCATCTGCAGATTCAGCTGCACCCAAAAGCAGCCCATCCCCTGTATCTTCAGGCAATTTTGGTGACCAAGTTGCAAAATTGCAGTCTGAAGATAATGCACCTCAGGGGGAAGTGCAGGAGTCTAAATCTGGATCTACTGTTCCAGCTTCAGTGAAATTGGAACTTTTTCCAGTTAAGGAGTCAGTTCACAAGGAAGAATCAGCTTGCACAAAGGTCCTTAAACTATTTGGAAAAGATGTAGTAGTCCCAGGAAACCCGGAATCATTTACGAGCTTGAGCAAGTCTCCCTCATTAGATATGGGGGAAGGAGTTCTCCAGGCAGGTCCAGAAGATTTCCAGGCTGCCGATAACTCAGTGAGAATTGTTGGAAATGCGCAGGATCATATGAAATTTTATTATGTGGATAAAAATGCAAACCAGGTAGAAAAACCGACACCTCTGCCATGGTGGGTTTTCTTCAGAGGGATGTCAGTTCCTCCATTTGTGGAAACCCAAGAGAAGGAAACTCAGCGAGAGGGATCTTCTGGAGAATCAAATAGCGATTCAGTTAATGGAGGAGAAACTCAGGATAAGAATTGGGAAACAGAAACGGAGTCTGGCCAATGCGGTCCAGTGTCAGACAAAGAAATTAAGTTTGTTGAGGATTCACCCAGTTTGATTGAGAAGAGAAGTAGCGTTGACAAGTGCAGAAAGGGATTTGTTCCTTATAAAAGATGCCTTTCGGAGAGAGACATGGAATCGACCATAGGCAGTGAAGATAGAGAAAGTCAAAGAGTTCGACTTTGCTTGTAG MPCSSSTMVTQEETSVAQSDSGNRNSSVAGAQTGVGEGQIPKIRKPYTITKQRERWTEEEHKKFLEALKLYGRAWRKIEDHVGSKTAVQIRSHAQKFFSKVVRETNNSNANSVADPIEIPPPRPKRKPSHPYPRKLVLPSRKDMPMEQGSRSVSPNSSLSEQENQSPTSVLSAAASDMLASADSAAPKSSPSPVSSGNFGDQVAKLQSEDNAPQGEVQESKSGSTVPASVKLELFPVKESVHKEESACTKVLKLFGKDVVVPGNPESFTSLSKSPSLDMGEGVLQAGPEDFQAADNSVRIVGNAQDHMKFYYVDKNANQVEKPTPLPWWVFFRGMSVPPFVETQEKETQREGSSGESNSDSVNGGETQDKNWETETESGQCGPVSDKEIKFVEDSPSLIEKRSSVDKCRKGFVPYKRCLSERDMESTIGSEDRESQRVRLCL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo19963.1 vs. NCBI nr
Match: gi|902202692|gb|KNA14325.1| (hypothetical protein SOVF_108370 [Spinacia oleracea]) HSP 1 Score: 850.5 bits (2196), Expect = 1.300e-243 Identity = 442/442 (100.00%), Postives = 442/442 (100.00%), Query Frame = 1
BLAST of Spo19963.1 vs. NCBI nr
Match: gi|731328780|ref|XP_010675239.1| (PREDICTED: protein REVEILLE 2 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 610.5 bits (1573), Expect = 2.300e-171 Identity = 334/445 (75.06%), Postives = 374/445 (84.04%), Query Frame = 1
BLAST of Spo19963.1 vs. NCBI nr
Match: gi|731328782|ref|XP_010675240.1| (PREDICTED: protein REVEILLE 1 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 465.3 bits (1196), Expect = 1.200e-127 Identity = 258/357 (72.27%), Postives = 296/357 (82.91%), Query Frame = 1
BLAST of Spo19963.1 vs. NCBI nr
Match: gi|147817015|emb|CAN68733.1| (hypothetical protein VITISV_012100 [Vitis vinifera]) HSP 1 Score: 327.0 bits (837), Expect = 5.000e-86 Identity = 225/454 (49.56%), Postives = 274/454 (60.35%), Query Frame = 1
BLAST of Spo19963.1 vs. NCBI nr
Match: gi|359476477|ref|XP_002267976.2| (PREDICTED: protein REVEILLE 1 [Vitis vinifera]) HSP 1 Score: 327.0 bits (837), Expect = 5.000e-86 Identity = 225/454 (49.56%), Postives = 274/454 (60.35%), Query Frame = 1
BLAST of Spo19963.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R483_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_108370 PE=4 SV=1) HSP 1 Score: 850.5 bits (2196), Expect = 9.100e-244 Identity = 442/442 (100.00%), Postives = 442/442 (100.00%), Query Frame = 1
BLAST of Spo19963.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CMR1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g084740 PE=4 SV=1) HSP 1 Score: 610.5 bits (1573), Expect = 1.600e-171 Identity = 334/445 (75.06%), Postives = 374/445 (84.04%), Query Frame = 1
BLAST of Spo19963.1 vs. UniProtKB/TrEMBL
Match: A5C7G8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012100 PE=4 SV=1) HSP 1 Score: 327.0 bits (837), Expect = 3.500e-86 Identity = 225/454 (49.56%), Postives = 274/454 (60.35%), Query Frame = 1
BLAST of Spo19963.1 vs. UniProtKB/TrEMBL
Match: D7TA25_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0079g00410 PE=4 SV=1) HSP 1 Score: 307.8 bits (787), Expect = 2.200e-80 Identity = 216/445 (48.54%), Postives = 267/445 (60.00%), Query Frame = 1
BLAST of Spo19963.1 vs. UniProtKB/TrEMBL
Match: M5X4Q8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005083mg PE=4 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 6.000e-78 Identity = 225/471 (47.77%), Postives = 271/471 (57.54%), Query Frame = 1
BLAST of Spo19963.1 vs. ExPASy Swiss-Prot
Match: RVE1_ARATH (Protein REVEILLE 1 OS=Arabidopsis thaliana GN=RVE1 PE=2 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 1.900e-53 Identity = 167/389 (42.93%), Postives = 219/389 (56.30%), Query Frame = 1
BLAST of Spo19963.1 vs. ExPASy Swiss-Prot
Match: RVE2_ARATH (Protein REVEILLE 2 OS=Arabidopsis thaliana GN=RVE2 PE=2 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 3.800e-41 Identity = 95/155 (61.29%), Postives = 119/155 (76.77%), Query Frame = 1
BLAST of Spo19963.1 vs. ExPASy Swiss-Prot
Match: RVE7_ARATH (Protein REVEILLE 7 OS=Arabidopsis thaliana GN=RVE7 PE=2 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 2.400e-35 Identity = 103/239 (43.10%), Postives = 145/239 (60.67%), Query Frame = 1
BLAST of Spo19963.1 vs. ExPASy Swiss-Prot
Match: RVE7L_ARATH (Protein REVEILLE 7-like OS=Arabidopsis thaliana GN=RVE7L PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 7.600e-34 Identity = 94/210 (44.76%), Postives = 129/210 (61.43%), Query Frame = 1
BLAST of Spo19963.1 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 1.200e-31 Identity = 82/139 (58.99%), Postives = 95/139 (68.35%), Query Frame = 1
BLAST of Spo19963.1 vs. TAIR (Arabidopsis)
Match: AT5G17300.1 (Homeodomain-like superfamily protein) HSP 1 Score: 211.5 bits (537), Expect = 1.100e-54 Identity = 167/389 (42.93%), Postives = 219/389 (56.30%), Query Frame = 1
BLAST of Spo19963.1 vs. TAIR (Arabidopsis)
Match: AT5G37260.1 (Homeodomain-like superfamily protein) HSP 1 Score: 170.6 bits (431), Expect = 2.100e-42 Identity = 95/155 (61.29%), Postives = 119/155 (76.77%), Query Frame = 1
BLAST of Spo19963.1 vs. TAIR (Arabidopsis)
Match: AT1G18330.2 (Homeodomain-like superfamily protein) HSP 1 Score: 151.4 bits (381), Expect = 1.300e-36 Identity = 103/239 (43.10%), Postives = 145/239 (60.67%), Query Frame = 1
BLAST of Spo19963.1 vs. TAIR (Arabidopsis)
Match: AT3G10113.1 (Homeodomain-like superfamily protein) HSP 1 Score: 146.4 bits (368), Expect = 4.300e-35 Identity = 94/210 (44.76%), Postives = 129/210 (61.43%), Query Frame = 1
BLAST of Spo19963.1 vs. TAIR (Arabidopsis)
Match: AT2G46830.1 (circadian clock associated 1) HSP 1 Score: 139.0 bits (349), Expect = 6.800e-33 Identity = 82/139 (58.99%), Postives = 95/139 (68.35%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19963.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19963.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19963.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo19963.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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