Spo19945 (gene) | SpinachBase

Overview


Name	Spo19945
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Non-specific lipid-transfer protein
Location	SpoScf_02260 : 62160 .. 63495 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCCTTCTCATTTCAAACCCCACATCACAAATCACCAAAATCACACTCTCATTCACTTAGAAAGTGATAGCGCGTGTTACACTTCCAAAAAAAAAAAAGCATTAGTCTCTAATTATGGCTAATTACAATCACTTTGTTTGCATTATTGTCCTTATGGCTCTAGTGGTGGTGGCCCCACATGCTAAGGCCGCGGTCACCTGTGGGACCGTGGTCACTAGCCTCTCACCATGTCTTGACTACTTCTCAGGAGGTGGTAACGGTCAACCACCTAGTGGTTGCTGCAACGGCATAAGGACCCTTAATGCCGAGGCTCAGTCCACTCCTGACCGTCAGATGGTCTGCACGTGTCTCAAACAGGCAGCCAACGCAATGCGAAATGTTAACCTTGGTTTGGCTGCTGCCATCCCTCCTAAGTGCGGGGTTCACATTCCTTACAAGCTTGACCCCTCTACTGATTGCTCCTCGTAATTTTTTAAACTCTCATTTAGTTATTACTAATATTTTTATTTTTACTAATTATTTGTCAATAATTAATAAGGTTTTATTACGAAGTATTTTTTTTTACCGTAAAATTAAAGTATTTCATGTCAAAGCTACAAAAAGTACATTGATAAAACCTTTTACTGACACATTACAAAATTAACATGTTACATGTGCCGTACTACCATAGTATGGTACACTGACACGTTAATACATAAATATAAAATTTAATACATTGAACATATATGTTACAAAAAAAGACATAATGTGATATACATGACTAAAATGATGATGTTAATTATAATACTCCGTAATATATAACAATAAGTTCAAGGTGGTACGTTACACTTATACAAAAAATTTGCAAGTCCTAGACCTAGACCAATTATAAACTTTTATGAAATGATCGTCTTATGTTTTATATATTGTTACACATATATTTATAGTTAACTTAATTTCTGATGATGAGTTGCGTTGGGTGCAAATGTGATGCAGGGTTCATTAAGAGAATGGATCTACAACTAGATCTGTAAGTGTTGCAACGGAGAATAAGGGTGGATCGTTGGGTCTGATTTCGTACCGGCCAGAGTCTTTTTCTCTATTTAGTTTCTAGTTGAATTATGATGGTGATTTCTAAAGTTTAGTTTGATGTATGAGGTTGCCTTTGTAGCAATATGGTCTCAGCTAATGTATGATCTGATTTACAGATGGAGTATATTTCTGAACCCATTTAACTAATATAAAAAAGTTTAGTTTATGTCGTATCTATTGACTTCAATGAGTATCAATTTTAAGCTAAAATTTTAATTACAAGAACTAAAATAACCAAGGAGAACTTTCTAATGAGACCGG

mRNA sequence

ATGAACCCTTCTCATTTCAAACCCCACATCACAAATCACCAAAATCACACTCTCATTCACTTAGAAAGTGATAGCGCGTGTTACACTTCCAAAAAAAAAAAAGCATTAGTCTCTAATTATGGCTAATTACAATCACTTTGTTTGCATTATTGTCCTTATGGCTCTAGTGGTGGTGGCCCCACATGCTAAGGCCGCGGTCACCTGTGGGACCGTGGTCACTAGCCTCTCACCATGTCTTGACTACTTCTCAGGAGGTGGTAACGGTCAACCACCTAGTGGTTGCTGCAACGGCATAAGGACCCTTAATGCCGAGGCTCAGTCCACTCCTGACCGTCAGATGGTCTGCACGTGTCTCAAACAGGCAGCCAACGCAATGCGAAATGTTAACCTTGGTTTGGCTGCTGCCATCCCTCCTAAGTGCGGGGTTCACATTCCTTACAAGCTTGACCCCTCTACTGATTGCTCCTCGGTTCATTAAGAGAATGGATCTACAACTAGATCTGTAAGTGTTGCAACGGAGAATAAGGGTGGATCGTTGGGTCTGATTTCGTACCGGCCAGAGTCTTTTTCTCTATTTAGTTTCTAGTTGAATTATGATGGTGATTTCTAAAGTTTAGTTTGATGTATGAGGTTGCCTTTGTAGCAATATGGTCTCAGCTAATGTATGATCTGATTTACAGATGGAGTATATTTCTGAACCCATTTAACTAATATAAAAAAGTTTAGTTTATGTCGTATCTATTGACTTCAATGAGTATCAATTTTAAGCTAAAATTTTAATTACAAGAACTAAAATAACCAAGGAGAACTTTCTAATGAGACCGG

Coding sequence (CDS)

ATGGCTAATTACAATCACTTTGTTTGCATTATTGTCCTTATGGCTCTAGTGGTGGTGGCCCCACATGCTAAGGCCGCGGTCACCTGTGGGACCGTGGTCACTAGCCTCTCACCATGTCTTGACTACTTCTCAGGAGGTGGTAACGGTCAACCACCTAGTGGTTGCTGCAACGGCATAAGGACCCTTAATGCCGAGGCTCAGTCCACTCCTGACCGTCAGATGGTCTGCACGTGTCTCAAACAGGCAGCCAACGCAATGCGAAATGTTAACCTTGGTTTGGCTGCTGCCATCCCTCCTAAGTGCGGGGTTCACATTCCTTACAAGCTTGACCCCTCTACTGATTGCTCCTCGGTTCATTAA

Protein sequence

MANYNHFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSVH

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19945.1	Spo19945.1	mRNA

Homology

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BLAST of Spo19945.1 vs. NCBI nr
Match: gi|902196885|gb|KNA13255.1| (hypothetical protein SOVF_118510 [Spinacia oleracea])

HSP 1 Score: 245.7 bits (626), Expect = 4.000e-62
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


		  
Query: 1   MANYNHFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIR 60
           MANYNHFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIR
Sbjct: 1   MANYNHFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIR 60

Query: 61  TLNAEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSVH 120
           TLNAEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSVH
Sbjct: 61  TLNAEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSVH 119

[Close]

BLAST of Spo19945.1 vs. NCBI nr
Match: gi|731344619|ref|XP_010683517.1| (PREDICTED: non-specific lipid-transfer protein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 182.2 bits (461), Expect = 5.400e-43
Identity = 88/120 (73.33%), Postives = 99/120 (82.50%), Query Frame = 1


		  
Query: 1   MANYN-HFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGI 60
           MANYN H  C+I L+ALVV+AP AKA VTCGTV TSL+PCL+Y   G +G  P GCC GI
Sbjct: 4   MANYNNHIFCVIFLIALVVLAPQAKATVTCGTVATSLTPCLNYLQAGASGAVPGGCCTGI 63

Query: 61  RTLNAEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSVH 120
           +TLN  AQSTPDRQMVC CLK AA AM NVN+GLA++IPPKCGV+IPYKLDPSTDCSSVH
Sbjct: 64  KTLNGAAQSTPDRQMVCQCLKSAAKAMPNVNVGLASSIPPKCGVNIPYKLDPSTDCSSVH 123

[Close]

BLAST of Spo19945.1 vs. NCBI nr
Match: gi|728842268|gb|KHG21711.1| (Non-specific lipid-transfer [Gossypium arboreum])

HSP 1 Score: 136.0 bits (341), Expect = 4.400e-29
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 1


		  
Query: 9   CIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEAQS 68
           C++VL  +VV AP A+ AVTCG V +SL+PC+ Y  G G G  P GCC+GI++LN+ AQ+
Sbjct: 11  CVVVL-CMVVGAPLAQGAVTCGQVTSSLAPCISYLRGTGAGAIPPGCCSGIKSLNSAAQT 70

Query: 69  TPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           TPDRQ  C C+K AA  +R +N GLA+ +P KCGV+IPYK+ PSTDC+SV
Sbjct: 71  TPDRQAACKCIKSAATGIRGINFGLASGLPGKCGVNIPYKISPSTDCNSV 119

[Close]

BLAST of Spo19945.1 vs. NCBI nr
Match: gi|7012724|gb|AAF35186.1|AF195865_1 (lipid transfer protein precursor [Gossypium hirsutum])

HSP 1 Score: 134.8 bits (338), Expect = 9.800e-29
Identity = 64/115 (55.65%), Postives = 84/115 (73.04%), Query Frame = 1


		  
Query: 4   YNHFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLN 63
           Y    C++VL  +VV AP A+ AVTCG V +SL+PC++Y  G G G  P GCC+GI++LN
Sbjct: 6   YLKLACVVVL-CMVVGAPLAQGAVTCGQVTSSLAPCINYLRGTGAGAIPPGCCSGIKSLN 65

Query: 64  AEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           + AQ+TPDRQ  C C+K AA  +  +N GLA+ +P KCGV+IPYK+ PSTDCSSV
Sbjct: 66  SAAQTTPDRQAACKCIKSAAAGIPGINFGLASGLPGKCGVNIPYKISPSTDCSSV 119

[Close]

BLAST of Spo19945.1 vs. NCBI nr
Match: gi|403391437|gb|AFR43276.1| (lipid transfer protein precursor [Gossypium herbaceum subsp. africanum])

HSP 1 Score: 134.0 bits (336), Expect = 1.700e-28
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 1


		  
Query: 9   CIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEAQS 68
           C++VL  +VV AP A+ AVTCG V +SL+PC++Y  G G G  P GCC+GI++LN+ AQ+
Sbjct: 11  CVVVL-CMVVGAPLAQGAVTCGQVTSSLAPCINYLRGTGAGAIPPGCCSGIKSLNSAAQT 70

Query: 69  TPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           TPDRQ  C C+K AA  +  +N GLA+ +P KCGV+IPYK+ PSTDCSSV
Sbjct: 71  TPDRQAACKCIKSAAAGIPGINFGLASGLPGKCGVNIPYKISPSTDCSSV 119

[Close]

BLAST of Spo19945.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R163_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea GN=SOVF_118510 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.800e-62
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


		  
Query: 1   MANYNHFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIR 60
           MANYNHFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIR
Sbjct: 1   MANYNHFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIR 60

Query: 61  TLNAEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSVH 120
           TLNAEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSVH
Sbjct: 61  TLNAEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSVH 119

[Close]

BLAST of Spo19945.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ETP7_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g157280 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.700e-43
Identity = 88/120 (73.33%), Postives = 99/120 (82.50%), Query Frame = 1


		  
Query: 1   MANYN-HFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGI 60
           MANYN H  C+I L+ALVV+AP AKA VTCGTV TSL+PCL+Y   G +G  P GCC GI
Sbjct: 4   MANYNNHIFCVIFLIALVVLAPQAKATVTCGTVATSLTPCLNYLQAGASGAVPGGCCTGI 63

Query: 61  RTLNAEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSVH 120
           +TLN  AQSTPDRQMVC CLK AA AM NVN+GLA++IPPKCGV+IPYKLDPSTDCSSVH
Sbjct: 64  KTLNGAAQSTPDRQMVCQCLKSAAKAMPNVNVGLASSIPPKCGVNIPYKLDPSTDCSSVH 123

[Close]

BLAST of Spo19945.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PE73_GOSAR (Non-specific lipid-transfer protein OS=Gossypium arboreum GN=F383_27985 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.100e-29
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 1


		  
Query: 9   CIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEAQS 68
           C++VL  +VV AP A+ AVTCG V +SL+PC+ Y  G G G  P GCC+GI++LN+ AQ+
Sbjct: 11  CVVVL-CMVVGAPLAQGAVTCGQVTSSLAPCISYLRGTGAGAIPPGCCSGIKSLNSAAQT 70

Query: 69  TPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           TPDRQ  C C+K AA  +R +N GLA+ +P KCGV+IPYK+ PSTDC+SV
Sbjct: 71  TPDRQAACKCIKSAATGIRGINFGLASGLPGKCGVNIPYKISPSTDCNSV 119

[Close]

BLAST of Spo19945.1 vs. UniProtKB/TrEMBL
Match: Q9M6B6_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum GN=FSltp3 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.900e-29
Identity = 64/115 (55.65%), Postives = 84/115 (73.04%), Query Frame = 1


		  
Query: 4   YNHFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLN 63
           Y    C++VL  +VV AP A+ AVTCG V +SL+PC++Y  G G G  P GCC+GI++LN
Sbjct: 6   YLKLACVVVL-CMVVGAPLAQGAVTCGQVTSSLAPCINYLRGTGAGAIPPGCCSGIKSLN 65

Query: 64  AEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           + AQ+TPDRQ  C C+K AA  +  +N GLA+ +P KCGV+IPYK+ PSTDCSSV
Sbjct: 66  SAAQTTPDRQAACKCIKSAAAGIPGINFGLASGLPGKCGVNIPYKISPSTDCSSV 119

[Close]

BLAST of Spo19945.1 vs. UniProtKB/TrEMBL
Match: U5HU07_GOSHE (Non-specific lipid-transfer protein OS=Gossypium herbaceum subsp. africanum GN=LTP3 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.200e-28
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 1


		  
Query: 9   CIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEAQS 68
           C++VL  +VV AP A+ AVTCG V +SL+PC++Y  G G G  P GCC+GI++LN+ AQ+
Sbjct: 11  CVVVL-CMVVGAPLAQGAVTCGQVTSSLAPCINYLRGTGAGAIPPGCCSGIKSLNSAAQT 70

Query: 69  TPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           TPDRQ  C C+K AA  +  +N GLA+ +P KCGV+IPYK+ PSTDCSSV
Sbjct: 71  TPDRQAACKCIKSAAAGIPGINFGLASGLPGKCGVNIPYKISPSTDCSSV 119

[Close]

BLAST of Spo19945.1 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 1.300e-28
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 1


		  
Query: 12  VLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEAQSTPD 71
           VL+ +VV AP+A+A +TCG V + L+PC+ Y  GG  G    GCC GI+ LNA A +TPD
Sbjct: 13  VLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGPLG---GGCCGGIKALNAAAATTPD 72

Query: 72  RQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSVH 120
           R+  C CLK AANA++ +N G AA +P  CGVHIPY + PST+C++VH
Sbjct: 73  RKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAVH 117

[Close]

BLAST of Spo19945.1 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.200e-28
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1


		  
Query: 9   CIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEAQS 68
           C++VL  +VV AP A+ AVT G V  SL+PC++Y  G G G  P GCC GI++LN+ AQ+
Sbjct: 11  CVVVL-CMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQT 70

Query: 69  TPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           TP RQ  C C+K AA  +  +N GLA+ +P KCGV+IPYK+ PSTDC+SV
Sbjct: 71  TPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSV 119

[Close]

BLAST of Spo19945.1 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.200e-28
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1


		  
Query: 9   CIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEAQS 68
           C++VL  +VV AP A+ AVT G V  SL+PC++Y  G G G  P GCC GI++LN+ AQ+
Sbjct: 7   CVVVL-CMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQT 66

Query: 69  TPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           TP RQ  C C+K AA  +  +N GLA+ +P KCGV+IPYK+ PSTDC+SV
Sbjct: 67  TPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSV 115

[Close]

BLAST of Spo19945.1 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.000e-26
Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = 1


		  
Query: 1   MANYNHFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIR 60
           MA      C++++M +VV+AP A+ A++CG V + LSPCL Y +GG    P   CC G++
Sbjct: 1   MARGMKLACVVLVMCMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQ--CCGGVK 60

Query: 61  TLNAEAQSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
            L A A +TPDRQ  C CLK AA ++  +N   AAA+P KCGV IPYK+  ST+C++V
Sbjct: 61  KLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTV 116

[Close]

BLAST of Spo19945.1 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.800e-26
Identity = 54/110 (49.09%), Postives = 77/110 (70.00%), Query Frame = 1


		  
Query: 9   CIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEAQS 68
           C++++M +VV+AP A+ A++CG V + LSPCL Y +GG    P   CC G++ L A A +
Sbjct: 1   CVVLVMCMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQ--CCGGVKKLLAAANT 60

Query: 69  TPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           TPDRQ  C CLK AA ++  +N   AAA+P KCGV+IPYK+  ST+C++V
Sbjct: 61  TPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTV 108

[Close]

BLAST of Spo19945.1 vs. TAIR (Arabidopsis)
Match: AT5G59310.1 (lipid transfer protein 4)

HSP 1 Score: 103.6 bits (257), Expect = 8.600e-23
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 1


		  
Query: 7   FVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEA 66
           F C ++ + +V       AA+TCGTV +SLSPCL Y S GG   PP  CC G++ LN  A
Sbjct: 8   FTCFVLTVFIVA---SVDAAITCGTVASSLSPCLGYLSKGGVVPPP--CCAGVKKLNGMA 67

Query: 67  QSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           Q+TPDRQ  C CL+ AA   + VN  LA+ +P KCGV IPY +  ST+C+++
Sbjct: 68  QTTPDRQQACRCLQSAA---KGVNPSLASGLPGKCGVSIPYPISTSTNCATI 111

[Close]

BLAST of Spo19945.1 vs. TAIR (Arabidopsis)
Match: AT5G59320.1 (lipid transfer protein 3)

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-21
Identity = 49/112 (43.75%), Postives = 74/112 (66.07%), Query Frame = 1


		  
Query: 7   FVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEA 66
           F C+++ + +V       AA++CGTV  SL+PC  Y S GG   PPS CC G++TLN+ A
Sbjct: 8   FTCLVLTVCIVA---SVDAAISCGTVAGSLAPCATYLSKGGL-VPPS-CCAGVKTLNSMA 67

Query: 67  QSTPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           ++TPDRQ  C C++  A ++  +N  LA+ +P KCGV IPY +  ST+C+++
Sbjct: 68  KTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114

[Close]

BLAST of Spo19945.1 vs. TAIR (Arabidopsis)
Match: AT2G38540.1 (lipid transfer protein 1)

HSP 1 Score: 93.6 bits (231), Expect = 8.900e-20
Identity = 48/119 (40.34%), Postives = 74/119 (62.18%), Query Frame = 1


		  
Query: 1   MANYNHFVCIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIR 60
           MA      C+++   +V     + AA++CG+V ++L+ C+ Y   GG    P  CC+G++
Sbjct: 1   MAGVMKLACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGG--VIPPACCSGVK 60

Query: 61  TLNAEAQSTPDRQMVCTCLKQAANAM-RNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
            LN+ A++TPDRQ  C C++ AA A+   +N G AA IP  CGV+IPYK+  ST+C +V
Sbjct: 61  NLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTV 117

[Close]

BLAST of Spo19945.1 vs. TAIR (Arabidopsis)
Match: AT3G51590.1 (lipid transfer protein 12)

HSP 1 Score: 92.8 bits (229), Expect = 1.500e-19
Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = 1


		  
Query: 9   CIIVLMALVVVAPHAKAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEAQS 68
           C+IVL   + +A   ++ + CGTV ++L+ CL Y +   +G  PS CC G+++L   AQ+
Sbjct: 10  CLIVLT--IYMASPTESTIQCGTVTSTLAQCLTYLTN--SGPLPSQCCVGVKSLYQLAQT 69

Query: 69  TPDRQMVCTCLKQAANAMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSSV 119
           TPDR+ VC CLK A   ++ +N  L AA+P  CGV IPY +  ST+C S+
Sbjct: 70  TPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115

[Close]

BLAST of Spo19945.1 vs. TAIR (Arabidopsis)
Match: AT3G08770.2 (lipid transfer protein 6)

HSP 1 Score: 90.1 bits (222), Expect = 9.800e-19
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 1


		  
Query: 11  IVLMALVVVAPHA-KAAVTCGTVVTSLSPCLDYFSGGGNGQPPSGCCNGIRTLNAEAQST 70
           ++L   +V+A H  +AAV+C TV+  L PCL Y + GG    P+ CCNG+ TL ++AQ++
Sbjct: 4   LLLAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQGG--PVPTLCCNGLTTLKSQAQTS 63

Query: 71  PDRQMVCTCLKQAAN--AMRNVNLGLAAAIPPKCGVHIPYKLDPSTDCSS 118
            DRQ VC C+K A     +    +  A  +P KCGV +PYK  PSTDC S
Sbjct: 64  VDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDS 111

The following BLAST results are available for this feature:

BLAST of Spo19945.1 vs. NCBI nr
BLAST of Spo19945.1 vs. UniProtKB/TrEMBL
BLAST of Spo19945.1 vs. ExPASy Swiss-Prot
BLAST of Spo19945.1 vs. TAIR (Arabidopsis)

BLAST of Spo19945.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902196885\|gb\|KNA13255.1\|	4.0e-62	100.	hypothetical protein SOVF_1185...	[more]
gi\|731344619\|ref\|XP_010683517.1\|	5.4e-43	73.3	PREDICTED: non-specific lipid-...	[more]
gi\|728842268\|gb\|KHG21711.1\|	4.4e-29	57.2	Non-specific lipid-transfer [G...	[more]
gi\|7012724\|gb\|AAF35186.1\|AF195865_1	9.8e-29	55.6	lipid transfer protein precurs...	[more]
gi\|403391437\|gb\|AFR43276.1\|	1.7e-28	57.2	lipid transfer protein precurs...	[more]

BLAST of Spo19945.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R163_SPIOL	2.8e-62	100.	Non-specific lipid-transfer pr...	[more]
A0A0J8ETP7_BETVU	3.7e-43	73.3	Non-specific lipid-transfer pr...	[more]
A0A0B0PE73_GOSAR	3.1e-29	57.2	Non-specific lipid-transfer pr...	[more]
Q9M6B6_GOSHI	6.9e-29	55.6	Non-specific lipid-transfer pr...	[more]
U5HU07_GOSHE	1.2e-28	57.2	Non-specific lipid-transfer pr...	[more]

BLAST of Spo19945.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
NLTP_SPIOL	1.3e-28	53.7	Non-specific lipid-transfer pr...	[more]
NLTP2_GOSHI	2.2e-28	54.5	Non-specific lipid-transfer pr...	[more]
NLTP1_GOSHI	2.2e-28	54.5	Non-specific lipid-transfer pr...	[more]
NLTP6_LENCU	6.0e-26	47.4	Non-specific lipid-transfer pr...	[more]
NLTP4_LENCU	7.8e-26	49.0	Non-specific lipid-transfer pr...	[more]

BLAST of Spo19945.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G59310.1	8.6e-23	48.2	lipid transfer protein 4	[more]
AT5G59320.1	1.2e-21	43.7	lipid transfer protein 3	[more]
AT2G38540.1	8.9e-20	40.3	lipid transfer protein 1	[more]
AT3G51590.1	1.5e-19	42.7	lipid transfer protein 12	[more]
AT3G08770.2	9.8e-19	44.5	lipid transfer protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 28..44 score: 9.3E-28coord: 106..117 score: 9.3E-28coord: 71..86 score: 9.3E-28coord: 50..64 score: 9.3E-28coord: 88..105 score: 9.3
IPR000528	Plant lipid transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 97..118 scor
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 29..115 score: 3.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 29..115 score: 2.4
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 26..118 score: 9.29
None	No IPR available	GENE3D	1.10.110.10		coord: 27..118 score: 3.8
None	No IPR available	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 8..118 score: 1.6
None	No IPR available	PANTHER	PTHR33076:SF11	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED	coord: 8..118 score: 1.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo09874	0.71	Barchart \| Table