Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTTGACACTTTGACAGTCATATTTTGCTGAATTCATTCGCCATTTACTTTACATTTTGACAGTGTTATGAATTTGGCGCTTAATAATAATGCATTAATGCCCAAAACAAAAGCGTAGGGAAAAGATTAGGACCAAGAAGATGAGCTTGTACTCGATAACTCATCTTCTTCCTCCTCCGCAACTCTCAATCTCCACCACCCCCACTTCTCCCCACCTTATTCCCACCACCACCACCACCACCACCACCACAACCACCAAACGCTCTATTCTCACCAGCTTACTCAGCCTCTCTCTTTCTCTCACCTTCACTCTTTCATCTCCATTATCCTCTTTTGCACTGCCTTCACTAAATTCACAATCACGACCCCCTTCTGTCTCTCCTACCACTCCCTTCTCTCAGTCCAAAAACTTGGCAATTGGGTTGGAAAATGGGTAATTTTTAATTTATTCTCTCTATCCCATTTTTTTAATTTGATAAGTATTAAAGTAATTTTTGTTGCTAAAGTTTGATTTGTTATTGCAGGAAAATTAGAGGTTGCCCACCAGTTAATCCTGGGTGTGTTACTACCAACCCAAAATCTTCCAATTTCGAATTCCCATGGCAGATTCCTTCTGATTCTACAGAAAATGCTGTTCAGGTAATTAAGAATTTTATTCAGTGTTCTTCTGATTTAATTTTTGTTCTTTTCCAGGAAACAAGTTTTATTAGGGTTTGCACCTTTTTTTTTTTTTTTTTTATTTGGATTGATTAAAAATTAGTTATATGTAGTTAGTTTATATTGTTGTTGTTTCCTTGGTCAATTCATGCTAGTTTATTTTGTGTTATCCATATGTTGAAAATGAGGTCAATTTGACAAGCCATTTTGGGGGTTTGAAATTAAAATTTGTTTTGTAGAAATGAAGTTGGAATGATATACTTCCTCCATTTTTTTTTTAATTGCACCATCTTTGATTTCACGCTTGCCAATGCACTATTTTAACCACTAATATCTCTCATTATACATTTTAAAAAATTATAAAAATTTGATGATTTGAAAGTATATATTTCGAGACGAATCTAACAAGATCCCACATGAATATATTTTTCTTTTAATATAAATCACAAAAAATAACTATATAAGAATATGTGAATAGTGCTAAAACCAAGATGGTGCAATTATTAAAAAATGGAGGAAGTAAGTTTTAACTCGATTAGAAGTTCGGAACTCTTAAAGTTAATTGAAAAGATGTTGTGGAATATAGACTTAGACCTGCCTAGTAGCAAGATATTGTGATTGAAAAAACCAGAAACAGCAGCTTTGAGGACAAAAAGGCTAGCAAGTTTTAGGGTGTGAATGTACAACGCCATTGAGGATTTGAGGTAGACGTATTGATAAAGAAGAATATGTGAATCTGCGAAATGTATTAAGGTTTGTTGAGCGGCTAGTAGGCTATGTAATGATATGTCTTGCAGTTATGGTTGATACTTGATAGGTAGAAAGATACAATAATGGTTTCATGGATTCATAGAGGGGCGTTGAGGTTAACTTCTATGTCAAGTGCATCTAGGAGCCCATGTCTAGTTGAGTGAAATTACAGATTATATAGCACTTTCACTGACTCTAAAATCATTCAAATGGTGAAATACTGAAATCTGAATCTTTATGTTAATCAACTCCTTAGTAATCAGAACATGAGGCTAATATGGTCAAACGAATTTAGCTAAGGGTGAATATGTTTGAAGAAAATGATAGCTTAGAGAAGTTCAGATAATAAGGGCGAACAGGTTTAGAAAAGAGTCATGAAGACAAGAAGTTCGTAGAAGTGGATTAGGGTCTTGAAGTTTTGGACTTTTGAACCCTTTTTATTCTAAGCCTAATAGATTTATTATTACTAACCATCAGAGATGAAGAAGCAAGCTTCTACATTCACACCTCTTCCTCCCTCCCAAAGCAACCAATTGCTGTCGCTAATGCTAGCAATAGTATGATTTGGCCAAAGTTCCATTCTGTGGCATATTGCACGAGTTACTATCATCTTAAACTTTTCAATTTTACATCTGAATTGGAAATATTGTAGAAGTGGCAAAAACTAAGATAGAAACAAAAAAATGTATCTTACATTGGCAGCCCAAAGCAGTTGACCAATCATGGGAAGCTGCAGTGCTGACGACTGCCAAGAGCAACATGTACTTAGGAGTTGGGGATGAATACATTGTGATAGTTATACTTGCTGAAGGATACCTTTAGTGAGGATGAGGGCCGATGAGGCAGAGGAGGCAGTTATGTTCCATTCTACTCGCCTTGTCATCTTATGTGTGTAATTATTGTGTGTTTCCTTTGTTATCCTTCCTATTCTTGTATGCAAAATTGTACTCCACTTTGTATTGTGCAACATAAATAACCTATTTTTCTCTGAAGCTTCTATGTCCACTGTTTTCCTCCTTTTGTTTGAAAATTAACCTATGTTTGCCCCCCCCCCCCCNCCCCCCTAATTTTTTTTTATTACGAACATTCTAAATAGTGTTCTGCTCATTTATTTTATTTTATTTTACTTTTTTGTTTGTTTGCTTCATTTGTCAAGAAGAAACCAATTTGTTTCCCGTCTTTTCTTTTTAATTCTCTACTTCCAGTATAAATACAGTAGAGAGCTCATGATTTTATTGTTGGGGTTGCTGCAGAAATTGCAAGAAGCAATTTTGAGTACACAGAAAAATGCCGAAATACAAGTTGTGGAAGACACACCTAATGGTAATCGTAGCATAAATGCTCTTTAACTTGTGTTTGCAAGTAAATATTTTGGAATTCTGTGTTATATGTATGATGTATGAAATGTGTCTATTTGGGTAAGCATACTTGAATTATGATTGACAAAAATGCAAAACATAATAAGCACCTTTTATAGGCTTTGTTTTATATAGGGTGATATACGCAGAACTCATTCTACATTGTGCTAATTCTAATGATGAGAACTTGCTGATGAAGTTTTACACCTGAATTTCCTTAGTTGAGAAAGTGTAAGCTAATAATGAAAATGACCCCCAGGACAATACCTTCGAGCTGTGGTTGATGGAGGATTTGGAAAAGACGTGATGGAATTCATGGTAAGAGGGGACGTTGTAACCTATCGCTGTATGGCCTCCAAGGTAACCTACATCTACCCCTTTACAACAGCTTTTGGGGATTCAAAAGGCCAGATAGAGAGAATGACCAAGATCGTAGAACACTTAGGTTGGTATGTTCCCAATTTGGACTTGATGGATTGAATTCACTAATCTATTGGATCCGTCAAAAAAAACATGCTGATTGAATTCGACACTGATTGAGCTTCAGCATTTGTGGATTCTGAACTCACTCATTGTTTACATAGTTTTTCATTTTTATCAGGAACAATTGTGAATAGTGTGATATACTTGAAACACAGAGTTGATTTTGTGCATTGTTTCTTAGCCAACTCCTTTGTATGTAATCAAAATTATTATATATAATTTGTTGGATAATTTTGGGTAATCAGATTGCTTTCCATTCTAACT AGTTGACACTTTGACAGTCATATTTTGCTGAATTCATTCGCCATTTACTTTACATTTTGACAGTGTTATGAATTTGGCGCTTAATAATAATGCATTAATGCCCAAAACAAAAGCGTAGGGAAAAGATTAGGACCAAGAAGATGAGCTTGTACTCGATAACTCATCTTCTTCCTCCTCCGCAACTCTCAATCTCCACCACCCCCACTTCTCCCCACCTTATTCCCACCACCACCACCACCACCACCACCACAACCACCAAACGCTCTATTCTCACCAGCTTACTCAGCCTCTCTCTTTCTCTCACCTTCACTCTTTCATCTCCATTATCCTCTTTTGCACTGCCTTCACTAAATTCACAATCACGACCCCCTTCTGTCTCTCCTACCACTCCCTTCTCTCAGTCCAAAAACTTGGCAATTGGGTTGGAAAATGGGAAAATTAGAGGTTGCCCACCAGTTAATCCTGGGTGTGTTACTACCAACCCAAAATCTTCCAATTTCGAATTCCCATGGCAGATTCCTTCTGATTCTACAGAAAATGCTGTTCAGAAATTGCAAGAAGCAATTTTGAGTACACAGAAAAATGCCGAAATACAAGTTGTGGAAGACACACCTAATGGACAATACCTTCGAGCTGTGGTTGATGGAGGATTTGGAAAAGACGTGATGGAATTCATGGTAAGAGGGGACGTTGTAACCTATCGCTGTATGGCCTCCAAGGTAACCTACATCTACCCCTTTACAACAGCTTTTGGGGATTCAAAAGGCCAGATAGAGAGAATGACCAAGATCGTAGAACACTTAGGTTGGTATGTTCCCAATTTGGACTTGATGGATTGAATTCACTAATCTATTGGATCCGTCAAAAAAAACATGCTGATTGAATTCGACACTGATTGAGCTTCAGCATTTGTGGATTCTGAACTCACTCATTGTTTACATAGTTTTTCATTTTTATCAGGAACAATTGTGAATAGTGTGATATACTTGAAACACAGAGTTGATTTTGTGCATTGTTTCTTAGCCAACTCCTTTGTATGTAATCAAAATTATTATATATAATTTGTTGGATAATTTTGGGTAATCAGATTGCTTTCCATTCTAACT ATGAGCTTGTACTCGATAACTCATCTTCTTCCTCCTCCGCAACTCTCAATCTCCACCACCCCCACTTCTCCCCACCTTATTCCCACCACCACCACCACCACCACCACCACAACCACCAAACGCTCTATTCTCACCAGCTTACTCAGCCTCTCTCTTTCTCTCACCTTCACTCTTTCATCTCCATTATCCTCTTTTGCACTGCCTTCACTAAATTCACAATCACGACCCCCTTCTGTCTCTCCTACCACTCCCTTCTCTCAGTCCAAAAACTTGGCAATTGGGTTGGAAAATGGGAAAATTAGAGGTTGCCCACCAGTTAATCCTGGGTGTGTTACTACCAACCCAAAATCTTCCAATTTCGAATTCCCATGGCAGATTCCTTCTGATTCTACAGAAAATGCTGTTCAGAAATTGCAAGAAGCAATTTTGAGTACACAGAAAAATGCCGAAATACAAGTTGTGGAAGACACACCTAATGGACAATACCTTCGAGCTGTGGTTGATGGAGGATTTGGAAAAGACGTGATGGAATTCATGGTAAGAGGGGACGTTGTAACCTATCGCTGTATGGCCTCCAAGGTAACCTACATCTACCCCTTTACAACAGCTTTTGGGGATTCAAAAGGCCAGATAGAGAGAATGACCAAGATCGTAGAACACTTAGGTTGGTATGTTCCCAATTTGGACTTGATGGATTGA MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo19765.1 vs. NCBI nr
Match: gi|902151338|gb|KNA05513.1| (hypothetical protein SOVF_189680 [Spinacia oleracea]) HSP 1 Score: 445.3 bits (1144), Expect = 6.600e-122 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1
BLAST of Spo19765.1 vs. NCBI nr
Match: gi|731366997|ref|XP_010695373.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 315.1 bits (806), Expect = 1.000e-82 Identity = 172/244 (70.49%), Postives = 199/244 (81.56%), Query Frame = 1
BLAST of Spo19765.1 vs. NCBI nr
Match: gi|566206990|ref|XP_002322266.2| (hypothetical protein POPTR_0015s10960g [Populus trichocarpa]) HSP 1 Score: 271.2 bits (692), Expect = 1.700e-69 Identity = 149/231 (64.50%), Postives = 176/231 (76.19%), Query Frame = 1
BLAST of Spo19765.1 vs. NCBI nr
Match: gi|743831219|ref|XP_011023991.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Populus euphratica]) HSP 1 Score: 270.8 bits (691), Expect = 2.200e-69 Identity = 149/231 (64.50%), Postives = 175/231 (75.76%), Query Frame = 1
BLAST of Spo19765.1 vs. NCBI nr
Match: gi|255540209|ref|XP_002511169.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Ricinus communis]) HSP 1 Score: 261.9 bits (668), Expect = 1.000e-66 Identity = 129/179 (72.07%), Postives = 150/179 (83.80%), Query Frame = 1
BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFQ5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_189680 PE=4 SV=1) HSP 1 Score: 445.3 bits (1144), Expect = 4.600e-122 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1
BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B9S3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g124510 PE=4 SV=1) HSP 1 Score: 315.1 bits (806), Expect = 7.200e-83 Identity = 172/244 (70.49%), Postives = 199/244 (81.56%), Query Frame = 1
BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: B9IFC9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s10960g PE=4 SV=2) HSP 1 Score: 271.2 bits (692), Expect = 1.200e-69 Identity = 149/231 (64.50%), Postives = 176/231 (76.19%), Query Frame = 1
BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: B9RAE4_RICCO (Thylakoid lumenal 17.9 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1505830 PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 7.300e-67 Identity = 129/179 (72.07%), Postives = 150/179 (83.80%), Query Frame = 1
BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: I1KC20_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G169300 PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 1.000e-65 Identity = 139/228 (60.96%), Postives = 176/228 (77.19%), Query Frame = 1
BLAST of Spo19765.1 vs. ExPASy Swiss-Prot
Match: TL1Y_ARATH (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g24930 PE=1 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 4.700e-51 Identity = 119/238 (50.00%), Postives = 163/238 (68.49%), Query Frame = 1
BLAST of Spo19765.1 vs. TAIR (Arabidopsis)
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast) HSP 1 Score: 202.6 bits (514), Expect = 2.600e-52 Identity = 119/238 (50.00%), Postives = 163/238 (68.49%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19765.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19765.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo19765.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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