Spo19765 (gene)

Overview
NameSpo19765
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionThylakoid lumenal 17.9 kDa protein
Locationchr5 : 16893059 .. 16896570 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTGACACTTTGACAGTCATATTTTGCTGAATTCATTCGCCATTTACTTTACATTTTGACAGTGTTATGAATTTGGCGCTTAATAATAATGCATTAATGCCCAAAACAAAAGCGTAGGGAAAAGATTAGGACCAAGAAGATGAGCTTGTACTCGATAACTCATCTTCTTCCTCCTCCGCAACTCTCAATCTCCACCACCCCCACTTCTCCCCACCTTATTCCCACCACCACCACCACCACCACCACCACAACCACCAAACGCTCTATTCTCACCAGCTTACTCAGCCTCTCTCTTTCTCTCACCTTCACTCTTTCATCTCCATTATCCTCTTTTGCACTGCCTTCACTAAATTCACAATCACGACCCCCTTCTGTCTCTCCTACCACTCCCTTCTCTCAGTCCAAAAACTTGGCAATTGGGTTGGAAAATGGGTAATTTTTAATTTATTCTCTCTATCCCATTTTTTTAATTTGATAAGTATTAAAGTAATTTTTGTTGCTAAAGTTTGATTTGTTATTGCAGGAAAATTAGAGGTTGCCCACCAGTTAATCCTGGGTGTGTTACTACCAACCCAAAATCTTCCAATTTCGAATTCCCATGGCAGATTCCTTCTGATTCTACAGAAAATGCTGTTCAGGTAATTAAGAATTTTATTCAGTGTTCTTCTGATTTAATTTTTGTTCTTTTCCAGGAAACAAGTTTTATTAGGGTTTGCACCTTTTTTTTTTTTTTTTTTATTTGGATTGATTAAAAATTAGTTATATGTAGTTAGTTTATATTGTTGTTGTTTCCTTGGTCAATTCATGCTAGTTTATTTTGTGTTATCCATATGTTGAAAATGAGGTCAATTTGACAAGCCATTTTGGGGGTTTGAAATTAAAATTTGTTTTGTAGAAATGAAGTTGGAATGATATACTTCCTCCATTTTTTTTTTAATTGCACCATCTTTGATTTCACGCTTGCCAATGCACTATTTTAACCACTAATATCTCTCATTATACATTTTAAAAAATTATAAAAATTTGATGATTTGAAAGTATATATTTCGAGACGAATCTAACAAGATCCCACATGAATATATTTTTCTTTTAATATAAATCACAAAAAATAACTATATAAGAATATGTGAATAGTGCTAAAACCAAGATGGTGCAATTATTAAAAAATGGAGGAAGTAAGTTTTAACTCGATTAGAAGTTCGGAACTCTTAAAGTTAATTGAAAAGATGTTGTGGAATATAGACTTAGACCTGCCTAGTAGCAAGATATTGTGATTGAAAAAACCAGAAACAGCAGCTTTGAGGACAAAAAGGCTAGCAAGTTTTAGGGTGTGAATGTACAACGCCATTGAGGATTTGAGGTAGACGTATTGATAAAGAAGAATATGTGAATCTGCGAAATGTATTAAGGTTTGTTGAGCGGCTAGTAGGCTATGTAATGATATGTCTTGCAGTTATGGTTGATACTTGATAGGTAGAAAGATACAATAATGGTTTCATGGATTCATAGAGGGGCGTTGAGGTTAACTTCTATGTCAAGTGCATCTAGGAGCCCATGTCTAGTTGAGTGAAATTACAGATTATATAGCACTTTCACTGACTCTAAAATCATTCAAATGGTGAAATACTGAAATCTGAATCTTTATGTTAATCAACTCCTTAGTAATCAGAACATGAGGCTAATATGGTCAAACGAATTTAGCTAAGGGTGAATATGTTTGAAGAAAATGATAGCTTAGAGAAGTTCAGATAATAAGGGCGAACAGGTTTAGAAAAGAGTCATGAAGACAAGAAGTTCGTAGAAGTGGATTAGGGTCTTGAAGTTTTGGACTTTTGAACCCTTTTTATTCTAAGCCTAATAGATTTATTATTACTAACCATCAGAGATGAAGAAGCAAGCTTCTACATTCACACCTCTTCCTCCCTCCCAAAGCAACCAATTGCTGTCGCTAATGCTAGCAATAGTATGATTTGGCCAAAGTTCCATTCTGTGGCATATTGCACGAGTTACTATCATCTTAAACTTTTCAATTTTACATCTGAATTGGAAATATTGTAGAAGTGGCAAAAACTAAGATAGAAACAAAAAAATGTATCTTACATTGGCAGCCCAAAGCAGTTGACCAATCATGGGAAGCTGCAGTGCTGACGACTGCCAAGAGCAACATGTACTTAGGAGTTGGGGATGAATACATTGTGATAGTTATACTTGCTGAAGGATACCTTTAGTGAGGATGAGGGCCGATGAGGCAGAGGAGGCAGTTATGTTCCATTCTACTCGCCTTGTCATCTTATGTGTGTAATTATTGTGTGTTTCCTTTGTTATCCTTCCTATTCTTGTATGCAAAATTGTACTCCACTTTGTATTGTGCAACATAAATAACCTATTTTTCTCTGAAGCTTCTATGTCCACTGTTTTCCTCCTTTTGTTTGAAAATTAACCTATGTTTGCCCCCCCCCCCCCNCCCCCCTAATTTTTTTTTATTACGAACATTCTAAATAGTGTTCTGCTCATTTATTTTATTTTATTTTACTTTTTTGTTTGTTTGCTTCATTTGTCAAGAAGAAACCAATTTGTTTCCCGTCTTTTCTTTTTAATTCTCTACTTCCAGTATAAATACAGTAGAGAGCTCATGATTTTATTGTTGGGGTTGCTGCAGAAATTGCAAGAAGCAATTTTGAGTACACAGAAAAATGCCGAAATACAAGTTGTGGAAGACACACCTAATGGTAATCGTAGCATAAATGCTCTTTAACTTGTGTTTGCAAGTAAATATTTTGGAATTCTGTGTTATATGTATGATGTATGAAATGTGTCTATTTGGGTAAGCATACTTGAATTATGATTGACAAAAATGCAAAACATAATAAGCACCTTTTATAGGCTTTGTTTTATATAGGGTGATATACGCAGAACTCATTCTACATTGTGCTAATTCTAATGATGAGAACTTGCTGATGAAGTTTTACACCTGAATTTCCTTAGTTGAGAAAGTGTAAGCTAATAATGAAAATGACCCCCAGGACAATACCTTCGAGCTGTGGTTGATGGAGGATTTGGAAAAGACGTGATGGAATTCATGGTAAGAGGGGACGTTGTAACCTATCGCTGTATGGCCTCCAAGGTAACCTACATCTACCCCTTTACAACAGCTTTTGGGGATTCAAAAGGCCAGATAGAGAGAATGACCAAGATCGTAGAACACTTAGGTTGGTATGTTCCCAATTTGGACTTGATGGATTGAATTCACTAATCTATTGGATCCGTCAAAAAAAACATGCTGATTGAATTCGACACTGATTGAGCTTCAGCATTTGTGGATTCTGAACTCACTCATTGTTTACATAGTTTTTCATTTTTATCAGGAACAATTGTGAATAGTGTGATATACTTGAAACACAGAGTTGATTTTGTGCATTGTTTCTTAGCCAACTCCTTTGTATGTAATCAAAATTATTATATATAATTTGTTGGATAATTTTGGGTAATCAGATTGCTTTCCATTCTAACT

mRNA sequence

AGTTGACACTTTGACAGTCATATTTTGCTGAATTCATTCGCCATTTACTTTACATTTTGACAGTGTTATGAATTTGGCGCTTAATAATAATGCATTAATGCCCAAAACAAAAGCGTAGGGAAAAGATTAGGACCAAGAAGATGAGCTTGTACTCGATAACTCATCTTCTTCCTCCTCCGCAACTCTCAATCTCCACCACCCCCACTTCTCCCCACCTTATTCCCACCACCACCACCACCACCACCACCACAACCACCAAACGCTCTATTCTCACCAGCTTACTCAGCCTCTCTCTTTCTCTCACCTTCACTCTTTCATCTCCATTATCCTCTTTTGCACTGCCTTCACTAAATTCACAATCACGACCCCCTTCTGTCTCTCCTACCACTCCCTTCTCTCAGTCCAAAAACTTGGCAATTGGGTTGGAAAATGGGAAAATTAGAGGTTGCCCACCAGTTAATCCTGGGTGTGTTACTACCAACCCAAAATCTTCCAATTTCGAATTCCCATGGCAGATTCCTTCTGATTCTACAGAAAATGCTGTTCAGAAATTGCAAGAAGCAATTTTGAGTACACAGAAAAATGCCGAAATACAAGTTGTGGAAGACACACCTAATGGACAATACCTTCGAGCTGTGGTTGATGGAGGATTTGGAAAAGACGTGATGGAATTCATGGTAAGAGGGGACGTTGTAACCTATCGCTGTATGGCCTCCAAGGTAACCTACATCTACCCCTTTACAACAGCTTTTGGGGATTCAAAAGGCCAGATAGAGAGAATGACCAAGATCGTAGAACACTTAGGTTGGTATGTTCCCAATTTGGACTTGATGGATTGAATTCACTAATCTATTGGATCCGTCAAAAAAAACATGCTGATTGAATTCGACACTGATTGAGCTTCAGCATTTGTGGATTCTGAACTCACTCATTGTTTACATAGTTTTTCATTTTTATCAGGAACAATTGTGAATAGTGTGATATACTTGAAACACAGAGTTGATTTTGTGCATTGTTTCTTAGCCAACTCCTTTGTATGTAATCAAAATTATTATATATAATTTGTTGGATAATTTTGGGTAATCAGATTGCTTTCCATTCTAACT

Coding sequence (CDS)

ATGAGCTTGTACTCGATAACTCATCTTCTTCCTCCTCCGCAACTCTCAATCTCCACCACCCCCACTTCTCCCCACCTTATTCCCACCACCACCACCACCACCACCACCACAACCACCAAACGCTCTATTCTCACCAGCTTACTCAGCCTCTCTCTTTCTCTCACCTTCACTCTTTCATCTCCATTATCCTCTTTTGCACTGCCTTCACTAAATTCACAATCACGACCCCCTTCTGTCTCTCCTACCACTCCCTTCTCTCAGTCCAAAAACTTGGCAATTGGGTTGGAAAATGGGAAAATTAGAGGTTGCCCACCAGTTAATCCTGGGTGTGTTACTACCAACCCAAAATCTTCCAATTTCGAATTCCCATGGCAGATTCCTTCTGATTCTACAGAAAATGCTGTTCAGAAATTGCAAGAAGCAATTTTGAGTACACAGAAAAATGCCGAAATACAAGTTGTGGAAGACACACCTAATGGACAATACCTTCGAGCTGTGGTTGATGGAGGATTTGGAAAAGACGTGATGGAATTCATGGTAAGAGGGGACGTTGTAACCTATCGCTGTATGGCCTCCAAGGTAACCTACATCTACCCCTTTACAACAGCTTTTGGGGATTCAAAAGGCCAGATAGAGAGAATGACCAAGATCGTAGAACACTTAGGTTGGTATGTTCCCAATTTGGACTTGATGGATTGA

Protein sequence

MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo19765.1Spo19765.1mRNA


Homology
BLAST of Spo19765.1 vs. NCBI nr
Match: gi|902151338|gb|KNA05513.1| (hypothetical protein SOVF_189680 [Spinacia oleracea])

HSP 1 Score: 445.3 bits (1144), Expect = 6.600e-122
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1

		  

Query: 1   MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS 60
           MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS
Sbjct: 1   MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS 60

Query: 61  PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF 120
           PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF
Sbjct: 61  PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF 120

Query: 121 EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV 180
           EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV
Sbjct: 121 EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV 180

Query: 181 RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD
Sbjct: 181 RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 232

BLAST of Spo19765.1 vs. NCBI nr
Match: gi|731366997|ref|XP_010695373.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 315.1 bits (806), Expect = 1.000e-82
Identity = 172/244 (70.49%), Postives = 199/244 (81.56%), Query Frame = 1

		  

Query: 1   MSLYSITH---LLPPPQLSISTTPT------SPHLIPTTTTTTTTTTTKRSILTSLLSLS 60
           MSL+SI H   LL PPQLS S T T      SP L  +T +  + + +K SILT+ +SLS
Sbjct: 1   MSLFSIAHAHLLLLPPQLSFSNTNTTTTTIASPKLNISTKSHNSNSNSKPSILTNFISLS 60

Query: 61  LSLTFTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCV 120
           LSL+ T SS L S ALPSL S S+PP +SPTTPFSQSKNL +GLENGK+R CP VNPGCV
Sbjct: 61  LSLSLTFSSSLPSLALPSLKSPSQPPLLSPTTPFSQSKNLPLGLENGKVRACPSVNPGCV 120

Query: 121 TTNPKSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVD--- 180
           TTNPKSSNFEFPW+IPS+S ENAV+KLQEAIL+TQKNA+IQVVED PNGQYLRA +D   
Sbjct: 121 TTNPKSSNFEFPWEIPSNSLENAVEKLQEAILNTQKNAKIQVVEDAPNGQYLRAEIDGGI 180

Query: 181 GGFGKDVMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNL 233
           GGFG+DV+EF+V+GDVVTYRCMA+KVT++YPFTTAFGDSKGQ ERM KIVE LGWY P+L
Sbjct: 181 GGFGRDVLEFLVKGDVVTYRCMATKVTFVYPFTTAFGDSKGQQERMKKIVEELGWYAPSL 240

BLAST of Spo19765.1 vs. NCBI nr
Match: gi|566206990|ref|XP_002322266.2| (hypothetical protein POPTR_0015s10960g [Populus trichocarpa])

HSP 1 Score: 271.2 bits (692), Expect = 1.700e-69
Identity = 149/231 (64.50%), Postives = 176/231 (76.19%), Query Frame = 1

		  

Query: 2   SLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSSP 61
           S+  I H+LPP  LS S           T  T+   T K  + T+L SL+L  T TL+SP
Sbjct: 14  SMSLIGHVLPP-HLSTSKI---------TNFTSQNVTPKPILFTNLFSLAL--TVTLNSP 73

Query: 62  LSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNFE 121
           L S A+PSLNSQ  PP +SPTTPFSQSKNL IGLENGKIR CP  NPGCV+TNP+SS+F 
Sbjct: 74  LPSLAIPSLNSQ--PPLLSPTTPFSQSKNLQIGLENGKIRPCPSTNPGCVSTNPQSSSFS 133

Query: 122 FPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMVR 181
           FPW+IP + TENA+QKL+EAIL TQ+NA+IQV+EDTPNG+YL+A VDGGF  DV+EF+VR
Sbjct: 134 FPWRIPENDTENAIQKLEEAILKTQRNAKIQVIEDTPNGKYLQAEVDGGFDPDVLEFLVR 193

Query: 182 GDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           GDVV YR MA+KVTY+YPFTTAFGDSKGQ ERM KI+  LGWY P+ D MD
Sbjct: 194 GDVVAYRTMATKVTYVYPFTTAFGDSKGQEERMKKILNELGWYAPSFDSMD 230

BLAST of Spo19765.1 vs. NCBI nr
Match: gi|743831219|ref|XP_011023991.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Populus euphratica])

HSP 1 Score: 270.8 bits (691), Expect = 2.200e-69
Identity = 149/231 (64.50%), Postives = 175/231 (75.76%), Query Frame = 1

		  

Query: 2   SLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSSP 61
           S+  I H+LPP  LS S           T  T+   T K  + T+L SL+L  T TL+SP
Sbjct: 12  SMSLIGHVLPP-HLSTSKI---------TNFTSQNVTPKPILFTNLFSLAL--TVTLNSP 71

Query: 62  LSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNFE 121
           L S A+PSLNSQ  PP +SPTTPFSQSKNL IGLENGKIR CP  NPGCV+TNP+SS+F 
Sbjct: 72  LPSLAIPSLNSQ--PPLLSPTTPFSQSKNLQIGLENGKIRPCPSTNPGCVSTNPQSSSFS 131

Query: 122 FPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMVR 181
           FPW+IP +  ENA+QKL+EAIL TQ+NA+IQV+EDTPNG+YL+A VDGGF  DV+EF+VR
Sbjct: 132 FPWRIPENDKENAIQKLEEAILKTQRNAKIQVIEDTPNGKYLQAEVDGGFDPDVLEFLVR 191

Query: 182 GDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           GDVV YR MA+KVTY+YPFTTAFGDSKGQ ERM KI+  LGWY PN D MD
Sbjct: 192 GDVVAYRTMATKVTYVYPFTTAFGDSKGQEERMKKILNELGWYAPNFDSMD 228

BLAST of Spo19765.1 vs. NCBI nr
Match: gi|255540209|ref|XP_002511169.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Ricinus communis])

HSP 1 Score: 261.9 bits (668), Expect = 1.000e-66
Identity = 129/179 (72.07%), Postives = 150/179 (83.80%), Query Frame = 1

		  

Query: 50  LSLSLTFTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPG 109
           LSL+LT TLSSPL S A+PS NS S  P + PTTPFSQSKNLA GLE+GKIR CP  NP 
Sbjct: 48  LSLALTVTLSSPLPSLAIPSPNSLSASPLLPPTTPFSQSKNLATGLEDGKIRPCPSTNPS 107

Query: 110 CVTTNPKSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDG 169
           C++TNPK+S F FP  IP DSTENA+QKLQEAIL TQ NA+IQV+E+TPNGQYL+A VDG
Sbjct: 108 CISTNPKTSQFAFPLTIPGDSTENAIQKLQEAILKTQGNAKIQVIENTPNGQYLQAEVDG 167

Query: 170 GFGKDVMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNL 229
           GFG+DV+EF+V+GDVV YR MA+KVTY+YPFTTAFGDSKGQ ERM KI++ LGWY  +L
Sbjct: 168 GFGRDVLEFLVKGDVVAYRSMATKVTYVYPFTTAFGDSKGQEERMKKIIDQLGWYTFSL 226

BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFQ5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_189680 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 4.600e-122
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1

		  

Query: 1   MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS 60
           MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS
Sbjct: 1   MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS 60

Query: 61  PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF 120
           PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF
Sbjct: 61  PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF 120

Query: 121 EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV 180
           EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV
Sbjct: 121 EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV 180

Query: 181 RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD
Sbjct: 181 RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 232

BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B9S3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g124510 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 7.200e-83
Identity = 172/244 (70.49%), Postives = 199/244 (81.56%), Query Frame = 1

		  

Query: 1   MSLYSITH---LLPPPQLSISTTPT------SPHLIPTTTTTTTTTTTKRSILTSLLSLS 60
           MSL+SI H   LL PPQLS S T T      SP L  +T +  + + +K SILT+ +SLS
Sbjct: 1   MSLFSIAHAHLLLLPPQLSFSNTNTTTTTIASPKLNISTKSHNSNSNSKPSILTNFISLS 60

Query: 61  LSLTFTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCV 120
           LSL+ T SS L S ALPSL S S+PP +SPTTPFSQSKNL +GLENGK+R CP VNPGCV
Sbjct: 61  LSLSLTFSSSLPSLALPSLKSPSQPPLLSPTTPFSQSKNLPLGLENGKVRACPSVNPGCV 120

Query: 121 TTNPKSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVD--- 180
           TTNPKSSNFEFPW+IPS+S ENAV+KLQEAIL+TQKNA+IQVVED PNGQYLRA +D   
Sbjct: 121 TTNPKSSNFEFPWEIPSNSLENAVEKLQEAILNTQKNAKIQVVEDAPNGQYLRAEIDGGI 180

Query: 181 GGFGKDVMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNL 233
           GGFG+DV+EF+V+GDVVTYRCMA+KVT++YPFTTAFGDSKGQ ERM KIVE LGWY P+L
Sbjct: 181 GGFGRDVLEFLVKGDVVTYRCMATKVTFVYPFTTAFGDSKGQQERMKKIVEELGWYAPSL 240

BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: B9IFC9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s10960g PE=4 SV=2)

HSP 1 Score: 271.2 bits (692), Expect = 1.200e-69
Identity = 149/231 (64.50%), Postives = 176/231 (76.19%), Query Frame = 1

		  

Query: 2   SLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSSP 61
           S+  I H+LPP  LS S           T  T+   T K  + T+L SL+L  T TL+SP
Sbjct: 14  SMSLIGHVLPP-HLSTSKI---------TNFTSQNVTPKPILFTNLFSLAL--TVTLNSP 73

Query: 62  LSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNFE 121
           L S A+PSLNSQ  PP +SPTTPFSQSKNL IGLENGKIR CP  NPGCV+TNP+SS+F 
Sbjct: 74  LPSLAIPSLNSQ--PPLLSPTTPFSQSKNLQIGLENGKIRPCPSTNPGCVSTNPQSSSFS 133

Query: 122 FPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMVR 181
           FPW+IP + TENA+QKL+EAIL TQ+NA+IQV+EDTPNG+YL+A VDGGF  DV+EF+VR
Sbjct: 134 FPWRIPENDTENAIQKLEEAILKTQRNAKIQVIEDTPNGKYLQAEVDGGFDPDVLEFLVR 193

Query: 182 GDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           GDVV YR MA+KVTY+YPFTTAFGDSKGQ ERM KI+  LGWY P+ D MD
Sbjct: 194 GDVVAYRTMATKVTYVYPFTTAFGDSKGQEERMKKILNELGWYAPSFDSMD 230

BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: B9RAE4_RICCO (Thylakoid lumenal 17.9 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1505830 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 7.300e-67
Identity = 129/179 (72.07%), Postives = 150/179 (83.80%), Query Frame = 1

		  

Query: 50  LSLSLTFTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPG 109
           LSL+LT TLSSPL S A+PS NS S  P + PTTPFSQSKNLA GLE+GKIR CP  NP 
Sbjct: 48  LSLALTVTLSSPLPSLAIPSPNSLSASPLLPPTTPFSQSKNLATGLEDGKIRPCPSTNPS 107

Query: 110 CVTTNPKSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDG 169
           C++TNPK+S F FP  IP DSTENA+QKLQEAIL TQ NA+IQV+E+TPNGQYL+A VDG
Sbjct: 108 CISTNPKTSQFAFPLTIPGDSTENAIQKLQEAILKTQGNAKIQVIENTPNGQYLQAEVDG 167

Query: 170 GFGKDVMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNL 229
           GFG+DV+EF+V+GDVV YR MA+KVTY+YPFTTAFGDSKGQ ERM KI++ LGWY  +L
Sbjct: 168 GFGRDVLEFLVKGDVVAYRSMATKVTYVYPFTTAFGDSKGQEERMKKIIDQLGWYTFSL 226

BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: I1KC20_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G169300 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.000e-65
Identity = 139/228 (60.96%), Postives = 176/228 (77.19%), Query Frame = 1

		  

Query: 5   SITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSSPLSS 64
           S+   L PP  S S   T+P L    TT T      + +L +LLSL+L++T  L+SPL S
Sbjct: 2   SLMSSLLPPLASSSYINTAPKL---KTTHTPNLVLGQRVLPNLLSLALAVT--LASPLPS 61

Query: 65  FALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNFEFPW 124
            A+PSLNSQ  PP +S TTPFSQSKNL +GLENGKIR CP +NPGC++TNPKSS+F FPW
Sbjct: 62  HAIPSLNSQ--PPPISLTTPFSQSKNLELGLENGKIRPCPSINPGCISTNPKSSSFSFPW 121

Query: 125 QIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMVRGDV 184
            IPS+S+++A+QKL+EAIL TQKN + Q VEDTP+GQYL+A VDGGFG+D++EF+V+GDV
Sbjct: 122 LIPSNSSDDAIQKLREAILKTQKNVKFQPVEDTPDGQYLQAEVDGGFGRDILEFLVKGDV 181

Query: 185 VTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           V YRC+A KVTY+YPFTTAFGDSKGQ  R+ +I + LGWY P+ D M+
Sbjct: 182 VAYRCVAMKVTYVYPFTTAFGDSKGQEARLKQINDQLGWYAPSFDSME 222

BLAST of Spo19765.1 vs. ExPASy Swiss-Prot
Match: TL1Y_ARATH (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.700e-51
Identity = 119/238 (50.00%), Postives = 163/238 (68.49%), Query Frame = 1

		  

Query: 1   MSLYSITHLLPPPQLSISTTPTSPHLI-----PTTTTTTTTTTTKRSILTSLLSLSLSLT 60
           MSL +   L+ PP+      P S  L+     P      ++T+   S+L  L+S +L+++
Sbjct: 1   MSLVASLQLILPPR------PRSTKLLCSLQSPKQEQELSSTSPPISLLPKLISFALAIS 60

Query: 61  FTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNP 120
            T  SP  + A+PSL+S S+P     TTPF+QSK +  GL NGKIR CP  NPGCV+TNP
Sbjct: 61  LTSFSP--ALAIPSLSS-SQPL----TTPFTQSKFVQTGLLNGKIRPCPSTNPGCVSTNP 120

Query: 121 KSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVD-GGFGKD 180
            SS+F FP  IP   T++ ++KL+EAI+STQKN +  V+EDTP G+Y+ A V+ GGF +D
Sbjct: 121 TSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEVEGGGFSRD 180

Query: 181 VMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           VMEF+V+ DVV YRCMA+KVT++YPFTTAFGDSKGQ ER+ K+++ LGWY P  + M+
Sbjct: 181 VMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAPTFESME 225

BLAST of Spo19765.1 vs. TAIR (Arabidopsis)
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast)

HSP 1 Score: 202.6 bits (514), Expect = 2.600e-52
Identity = 119/238 (50.00%), Postives = 163/238 (68.49%), Query Frame = 1

		  

Query: 1   MSLYSITHLLPPPQLSISTTPTSPHLI-----PTTTTTTTTTTTKRSILTSLLSLSLSLT 60
           MSL +   L+ PP+      P S  L+     P      ++T+   S+L  L+S +L+++
Sbjct: 1   MSLVASLQLILPPR------PRSTKLLCSLQSPKQEQELSSTSPPISLLPKLISFALAIS 60

Query: 61  FTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNP 120
            T  SP  + A+PSL+S S+P     TTPF+QSK +  GL NGKIR CP  NPGCV+TNP
Sbjct: 61  LTSFSP--ALAIPSLSS-SQPL----TTPFTQSKFVQTGLLNGKIRPCPSTNPGCVSTNP 120

Query: 121 KSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVD-GGFGKD 180
            SS+F FP  IP   T++ ++KL+EAI+STQKN +  V+EDTP G+Y+ A V+ GGF +D
Sbjct: 121 TSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEVEGGGFSRD 180

Query: 181 VMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           VMEF+V+ DVV YRCMA+KVT++YPFTTAFGDSKGQ ER+ K+++ LGWY P  + M+
Sbjct: 181 VMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAPTFESME 225

The following BLAST results are available for this feature:
BLAST of Spo19765.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902151338|gb|KNA05513.1|6.6e-122100.hypothetical protein SOVF_1896... [more]
gi|731366997|ref|XP_010695373.1|1.0e-8270.4PREDICTED: thylakoid lumenal 1... [more]
gi|566206990|ref|XP_002322266.2|1.7e-6964.5hypothetical protein POPTR_001... [more]
gi|743831219|ref|XP_011023991.1|2.2e-6964.5PREDICTED: thylakoid lumenal 1... [more]
gi|255540209|ref|XP_002511169.1|1.0e-6672.0PREDICTED: thylakoid lumenal 1... [more]
back to top
BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QFQ5_SPIOL4.6e-122100.Uncharacterized protein OS=Spi... [more]
A0A0J8B9S3_BETVU7.2e-8370.4Uncharacterized protein OS=Bet... [more]
B9IFC9_POPTR1.2e-6964.5Uncharacterized protein OS=Pop... [more]
B9RAE4_RICCO7.3e-6772.0Thylakoid lumenal 17.9 kDa pro... [more]
I1KC20_SOYBN1.0e-6560.9Uncharacterized protein OS=Gly... [more]
back to top
BLAST of Spo19765.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TL1Y_ARATH4.7e-5150.0Thylakoid lumenal 17.9 kDa pro... [more]
back to top
BLAST of Spo19765.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G24930.12.6e-5250.0thylakoid lumenal 17.9 kDa pro... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36783FAMILY NOT NAMEDcoord: 50..232
score: 8.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0009813 flavonoid biosynthetic process
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0006418 tRNA aminoacylation for protein translation
biological_process GO:0006725 cellular aromatic compound metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0046483 heterocycle metabolic process
biological_process GO:1901360 organic cyclic compound metabolic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0006364 rRNA processing
biological_process GO:0030154 cell differentiation
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009658 chloroplast organization
biological_process GO:0007623 circadian rhythm
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0032544 plastid translation
biological_process GO:0045727 positive regulation of translation
biological_process GO:0009637 response to blue light
biological_process GO:0010218 response to far red light
biological_process GO:0009735 response to cytokinin
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0008152 metabolic process
biological_process GO:0006397 mRNA processing
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0034051 negative regulation of plant-type hypersensitive response
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0009902 chloroplast relocation
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0010207 photosystem II assembly
biological_process GO:0042793 plastid transcription
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010114 response to red light
cellular_component GO:0000311 plastid large ribosomal subunit
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0010287 plastoglobule
cellular_component GO:0010319 stromule
cellular_component GO:0009295 nucleoid
cellular_component GO:0009579 thylakoid
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0044434 chloroplast part
cellular_component GO:0048046 apoplast
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009507 chloroplast
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005840 ribosome
cellular_component GO:0005634 nucleus
molecular_function GO:0005504 fatty acid binding
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0047134 protein-disulfide reductase activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0045430 chalcone isomerase activity
molecular_function GO:0008266 poly(U) RNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0000049 tRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016853 isomerase activity
RNA-Seq Expression