Spo19695 (gene) | SpinachBase

Overview


Name	Spo19695
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	chr5 : 22520938 .. 22521576 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGCCTTTGTAGACAAAACCATGGGTCAAGAAACCGGGCATCCATCTCATCCGAAACAGAGACCAAGGAGGTGTAAGGTTGCTGTTCTGGCAATCCTTATACTCCTGCTAGCAATAATACTAGTTGGGTTTATCGTAGGAGTAACAGTTTTTAAGGTTAGAAGTGCCAGGACACAGGTGGCGTCTGCTTCGCTTGATGGCGTGGCTCCCAGGATCTCTTTCCCAGCCATTAAGGTTGAGCTAAATATCACTCTCAACCTCACCCTCCTCATTCAAAACCCTAATCATGCCAGCTTCAAAAGCGGGGAGGGAGAGGGTGTATTGCTGTATCAGGGAAACCGGGTTGGGGACACTCGTCTTCATCCTGGGCAGATTCCAGCCAGGGGTACCTCCACTTTGATTTGCCTTCTCACTGTCGAGGTTGATAAATTTGCAGATTCAGGACCATCATCTCTCTTCACCGATATAGCAGCTGGACAGCTAGTCCTGGAAACCAACACCAGGATCCCGGGCAGGGTTACTTTTCTTGGAATCTTCCATAAACATATTGTTTCTACCTCCGATTGCCAGATTGTCATTGGATTTCCAGATCTCAACATCAAAAGTCAAGACTGCAAGAATCACAATAAACTTTGA

mRNA sequence

ATGACCGCCTTTGTAGACAAAACCATGGGTCAAGAAACCGGGCATCCATCTCATCCGAAACAGAGACCAAGGAGGTGTAAGGTTGCTGTTCTGGCAATCCTTATACTCCTGCTAGCAATAATACTAGTTGGGTTTATCGTAGGAGTAACAGTTTTTAAGGTTAGAAGTGCCAGGACACAGGTGGCGTCTGCTTCGCTTGATGGCGTGGCTCCCAGGATCTCTTTCCCAGCCATTAAGGTTGAGCTAAATATCACTCTCAACCTCACCCTCCTCATTCAAAACCCTAATCATGCCAGCTTCAAAAGCGGGGAGGGAGAGGGTGTATTGCTGTATCAGGGAAACCGGGTTGGGGACACTCGTCTTCATCCTGGGCAGATTCCAGCCAGGGGTACCTCCACTTTGATTTGCCTTCTCACTGTCGAGGTTGATAAATTTGCAGATTCAGGACCATCATCTCTCTTCACCGATATAGCAGCTGGACAGCTAGTCCTGGAAACCAACACCAGGATCCCGGGCAGGGTTACTTTTCTTGGAATCTTCCATAAACATATTGTTTCTACCTCCGATTGCCAGATTGTCATTGGATTTCCAGATCTCAACATCAAAAGTCAAGACTGCAAGAATCACAATAAACTTTGA

Coding sequence (CDS)

ATGACCGCCTTTGTAGACAAAACCATGGGTCAAGAAACCGGGCATCCATCTCATCCGAAACAGAGACCAAGGAGGTGTAAGGTTGCTGTTCTGGCAATCCTTATACTCCTGCTAGCAATAATACTAGTTGGGTTTATCGTAGGAGTAACAGTTTTTAAGGTTAGAAGTGCCAGGACACAGGTGGCGTCTGCTTCGCTTGATGGCGTGGCTCCCAGGATCTCTTTCCCAGCCATTAAGGTTGAGCTAAATATCACTCTCAACCTCACCCTCCTCATTCAAAACCCTAATCATGCCAGCTTCAAAAGCGGGGAGGGAGAGGGTGTATTGCTGTATCAGGGAAACCGGGTTGGGGACACTCGTCTTCATCCTGGGCAGATTCCAGCCAGGGGTACCTCCACTTTGATTTGCCTTCTCACTGTCGAGGTTGATAAATTTGCAGATTCAGGACCATCATCTCTCTTCACCGATATAGCAGCTGGACAGCTAGTCCTGGAAACCAACACCAGGATCCCGGGCAGGGTTACTTTTCTTGGAATCTTCCATAAACATATTGTTTCTACCTCCGATTGCCAGATTGTCATTGGATTTCCAGATCTCAACATCAAAAGTCAAGACTGCAAGAATCACAATAAACTTTGA

Protein sequence

MTAFVDKTMGQETGHPSHPKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQVASASLDGVAPRISFPAIKVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTRLHPGQIPARGTSTLICLLTVEVDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIFHKHIVSTSDCQIVIGFPDLNIKSQDCKNHNKL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19695.1	Spo19695.1	mRNA

Homology

[Close]

BLAST of Spo19695.1 vs. NCBI nr
Match: gi|902189327|gb|KNA11352.1| (hypothetical protein SOVF_136040 [Spinacia oleracea])

HSP 1 Score: 411.0 bits (1055), Expect = 1.300e-111
Identity = 209/212 (98.58%), Postives = 210/212 (99.06%), Query Frame = 1


		  
Query: 1   MTAFVDKTMGQETGHPSHPKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQ 60
           MTAFVDKTMGQETGHPSHPKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQ
Sbjct: 1   MTAFVDKTMGQETGHPSHPKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQ 60

Query: 61  VASASLDGVAPRISFPAIKVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTR 120
           VASASLDG+APRISFPAIKVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTR
Sbjct: 61  VASASLDGMAPRISFPAIKVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTR 120

Query: 121 LHPGQIPARGTSTLICLLTVEVDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIF 180
           LH GQIPARGTSTLICLLTVEVDKFADSG SSLFTDIAAGQLVLETNTRIPGRVTFLGIF
Sbjct: 121 LHSGQIPARGTSTLICLLTVEVDKFADSGSSSLFTDIAAGQLVLETNTRIPGRVTFLGIF 180

Query: 181 HKHIVSTSDCQIVIGFPDLNIKSQDCKNHNKL 213
           HKHIVSTSDCQIVIGFPDLNIKSQDCKNHNKL
Sbjct: 181 HKHIVSTSDCQIVIGFPDLNIKSQDCKNHNKL 212

[Close]

BLAST of Spo19695.1 vs. NCBI nr
Match: gi|731344440|ref|XP_010683422.1| (PREDICTED: uncharacterized protein LOC104898107 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 295.0 bits (754), Expect = 1.000e-76
Identity = 149/194 (76.80%), Postives = 169/194 (87.11%), Query Frame = 1


		  
Query: 19  PKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQVASASLDGVAPRISFPAI 78
           PKQR RRC+V +  IL+LL+ +ILVGFI+GVTVFKVR  RTQV SASL+GVAPR+SFP I
Sbjct: 24  PKQR-RRCQVVLAIILLLLITVILVGFILGVTVFKVREPRTQVVSASLEGVAPRVSFPVI 83

Query: 79  KVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTRLHPGQIPARGTSTLICLL 138
           K+ELNITLNLTLLIQN NH SFKS +GEGVLL+Q   VG+  LHP  I AR TSTL+CLL
Sbjct: 84  KIELNITLNLTLLIQNRNHVSFKSDQGEGVLLFQAKPVGEAHLHPSLIRARATSTLLCLL 143

Query: 139 TVEVDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIFHKHIVSTSDCQIVIGFPD 198
           TVEVD+FADSG +SL ++IAAG+L+L+T TRIPGRVTFLGIFHKHIVSTSDCQIVIGFPD
Sbjct: 144 TVEVDRFADSGLTSLISNIAAGELLLQTKTRIPGRVTFLGIFHKHIVSTSDCQIVIGFPD 203

Query: 199 LNIKSQDCKNHNKL 213
           LNIKSQDCK HNKL
Sbjct: 204 LNIKSQDCKQHNKL 216

[Close]

BLAST of Spo19695.1 vs. NCBI nr
Match: gi|870854728|gb|KMT06476.1| (hypothetical protein BVRB_7g156550 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 295.0 bits (754), Expect = 1.000e-76
Identity = 149/194 (76.80%), Postives = 169/194 (87.11%), Query Frame = 1


		  
Query: 19  PKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQVASASLDGVAPRISFPAI 78
           PKQR RRC+V +  IL+LL+ +ILVGFI+GVTVFKVR  RTQV SASL+GVAPR+SFP I
Sbjct: 16  PKQR-RRCQVVLAIILLLLITVILVGFILGVTVFKVREPRTQVVSASLEGVAPRVSFPVI 75

Query: 79  KVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTRLHPGQIPARGTSTLICLL 138
           K+ELNITLNLTLLIQN NH SFKS +GEGVLL+Q   VG+  LHP  I AR TSTL+CLL
Sbjct: 76  KIELNITLNLTLLIQNRNHVSFKSDQGEGVLLFQAKPVGEAHLHPSLIRARATSTLLCLL 135

Query: 139 TVEVDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIFHKHIVSTSDCQIVIGFPD 198
           TVEVD+FADSG +SL ++IAAG+L+L+T TRIPGRVTFLGIFHKHIVSTSDCQIVIGFPD
Sbjct: 136 TVEVDRFADSGLTSLISNIAAGELLLQTKTRIPGRVTFLGIFHKHIVSTSDCQIVIGFPD 195

Query: 199 LNIKSQDCKNHNKL 213
           LNIKSQDCK HNKL
Sbjct: 196 LNIKSQDCKQHNKL 208

[Close]

BLAST of Spo19695.1 vs. NCBI nr
Match: gi|595829700|ref|XP_007205920.1| (hypothetical protein PRUPE_ppa011610mg [Prunus persica])

HSP 1 Score: 227.3 bits (578), Expect = 2.600e-56
Identity = 109/204 (53.43%), Postives = 150/204 (73.53%), Query Frame = 1


		  
Query: 9   MGQETGHPSHPKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQVASASLDG 68
           M + + H + P +R R C +A+  +L L+L + ++  I+ +TVFK +  RTQ+ SAS+DG
Sbjct: 1   MTENSDHLTKPNKRKRSCLIAIGVVLFLILLLFIIALILALTVFKTKQPRTQILSASVDG 60

Query: 69  VAPRISFPAIKVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTRLHPGQIPA 128
           VAPRISFPA+++ELNITL+L +L++N NHASFK G G+  LLYQGN+VGD  L+PG IPA
Sbjct: 61  VAPRISFPAVQIELNITLDLMILVENRNHASFKHGTGKTFLLYQGNQVGDADLYPGFIPA 120

Query: 129 RGTSTLICLLTVEVDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIFHKHIVSTS 188
           RG STL C LT++ D+ A++  S+L +D+  G+ VLET TRIPGRVT LG   KH V+ S
Sbjct: 121 RGNSTLPCRLTLQADRLANN-MSNLISDVLGGEFVLETRTRIPGRVTLLGFIKKHAVAVS 180

Query: 189 DCQIVIGFPDLNIKSQDCKNHNKL 213
           +CQ+ IGFPD+ +K Q CK+  KL
Sbjct: 181 ECQLTIGFPDMTVKRQVCKSKAKL 203

[Close]

BLAST of Spo19695.1 vs. NCBI nr
Match: gi|645221280|ref|XP_008244364.1| (PREDICTED: uncharacterized protein LOC103342504 [Prunus mume])

HSP 1 Score: 224.2 bits (570), Expect = 2.200e-55
Identity = 107/204 (52.45%), Postives = 149/204 (73.04%), Query Frame = 1


		  
Query: 9   MGQETGHPSHPKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQVASASLDG 68
           M + + H + P +R R C +A+  +L L+L + ++  I+ +TVFK R   TQ+ SAS+DG
Sbjct: 1   MTENSDHLTKPNKRKRSCLIAIGVVLFLILLLFIIALILALTVFKTRQPITQILSASVDG 60

Query: 69  VAPRISFPAIKVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTRLHPGQIPA 128
           VAPR+SFPA+++ELNITL+L +L++N NHASFK G G+  LLYQGN+VGD  L+PG IP+
Sbjct: 61  VAPRVSFPAVQIELNITLDLMILVENRNHASFKHGTGKTFLLYQGNQVGDADLYPGFIPS 120

Query: 129 RGTSTLICLLTVEVDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIFHKHIVSTS 188
           RG STL C LT++ D+  ++  S+L +D+  G+ VLET TRIPGRVTFLG   KH V+ S
Sbjct: 121 RGNSTLPCRLTLQADRLVNN-MSNLISDLLGGEFVLETRTRIPGRVTFLGFIKKHAVAVS 180

Query: 189 DCQIVIGFPDLNIKSQDCKNHNKL 213
           +CQ+ IGFPD+ +K Q CK+  KL
Sbjct: 181 ECQLTIGFPDMKVKRQVCKSKAKL 203

[Close]

BLAST of Spo19695.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVP6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136040 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 8.800e-112
Identity = 209/212 (98.58%), Postives = 210/212 (99.06%), Query Frame = 1


		  
Query: 1   MTAFVDKTMGQETGHPSHPKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQ 60
           MTAFVDKTMGQETGHPSHPKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQ
Sbjct: 1   MTAFVDKTMGQETGHPSHPKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQ 60

Query: 61  VASASLDGVAPRISFPAIKVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTR 120
           VASASLDG+APRISFPAIKVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTR
Sbjct: 61  VASASLDGMAPRISFPAIKVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTR 120

Query: 121 LHPGQIPARGTSTLICLLTVEVDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIF 180
           LH GQIPARGTSTLICLLTVEVDKFADSG SSLFTDIAAGQLVLETNTRIPGRVTFLGIF
Sbjct: 121 LHSGQIPARGTSTLICLLTVEVDKFADSGSSSLFTDIAAGQLVLETNTRIPGRVTFLGIF 180

Query: 181 HKHIVSTSDCQIVIGFPDLNIKSQDCKNHNKL 213
           HKHIVSTSDCQIVIGFPDLNIKSQDCKNHNKL
Sbjct: 181 HKHIVSTSDCQIVIGFPDLNIKSQDCKNHNKL 212

[Close]

BLAST of Spo19695.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ETG2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g156550 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 7.100e-77
Identity = 149/194 (76.80%), Postives = 169/194 (87.11%), Query Frame = 1


		  
Query: 19  PKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQVASASLDGVAPRISFPAI 78
           PKQR RRC+V +  IL+LL+ +ILVGFI+GVTVFKVR  RTQV SASL+GVAPR+SFP I
Sbjct: 16  PKQR-RRCQVVLAIILLLLITVILVGFILGVTVFKVREPRTQVVSASLEGVAPRVSFPVI 75

Query: 79  KVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTRLHPGQIPARGTSTLICLL 138
           K+ELNITLNLTLLIQN NH SFKS +GEGVLL+Q   VG+  LHP  I AR TSTL+CLL
Sbjct: 76  KIELNITLNLTLLIQNRNHVSFKSDQGEGVLLFQAKPVGEAHLHPSLIRARATSTLLCLL 135

Query: 139 TVEVDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIFHKHIVSTSDCQIVIGFPD 198
           TVEVD+FADSG +SL ++IAAG+L+L+T TRIPGRVTFLGIFHKHIVSTSDCQIVIGFPD
Sbjct: 136 TVEVDRFADSGLTSLISNIAAGELLLQTKTRIPGRVTFLGIFHKHIVSTSDCQIVIGFPD 195

Query: 199 LNIKSQDCKNHNKL 213
           LNIKSQDCK HNKL
Sbjct: 196 LNIKSQDCKQHNKL 208

[Close]

BLAST of Spo19695.1 vs. UniProtKB/TrEMBL
Match: M5W080_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011610mg PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.800e-56
Identity = 109/204 (53.43%), Postives = 150/204 (73.53%), Query Frame = 1


		  
Query: 9   MGQETGHPSHPKQRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQVASASLDG 68
           M + + H + P +R R C +A+  +L L+L + ++  I+ +TVFK +  RTQ+ SAS+DG
Sbjct: 1   MTENSDHLTKPNKRKRSCLIAIGVVLFLILLLFIIALILALTVFKTKQPRTQILSASVDG 60

Query: 69  VAPRISFPAIKVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTRLHPGQIPA 128
           VAPRISFPA+++ELNITL+L +L++N NHASFK G G+  LLYQGN+VGD  L+PG IPA
Sbjct: 61  VAPRISFPAVQIELNITLDLMILVENRNHASFKHGTGKTFLLYQGNQVGDADLYPGFIPA 120

Query: 129 RGTSTLICLLTVEVDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIFHKHIVSTS 188
           RG STL C LT++ D+ A++  S+L +D+  G+ VLET TRIPGRVT LG   KH V+ S
Sbjct: 121 RGNSTLPCRLTLQADRLANN-MSNLISDVLGGEFVLETRTRIPGRVTLLGFIKKHAVAVS 180

Query: 189 DCQIVIGFPDLNIKSQDCKNHNKL 213
           +CQ+ IGFPD+ +K Q CK+  KL
Sbjct: 181 ECQLTIGFPDMTVKRQVCKSKAKL 203

[Close]

BLAST of Spo19695.1 vs. UniProtKB/TrEMBL
Match: A5BBS3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022239 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.700e-51
Identity = 101/216 (46.76%), Postives = 145/216 (67.13%), Query Frame = 1


		  
Query: 8   TMGQETGHPSHPKQRP------------RRCKVAVLAILILLLAIILVGFIVGVTVFKVR 67
           TM Q   H  +P   P             RC +A+  ++ L++ + +V  I+ +TVFK +
Sbjct: 221 TMIQNNDHXPNPDPEPVPEAKNRRHVRRXRCLIAIGXVIFLIMLLFIVLLILVLTVFKAK 280

Query: 68  SARTQVASASLDGVAPRISFPAIKVELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNR 127
             +TQ+ SA+LDG++PRISFP ++++LNITLNL +L++NPNHASFK G G+ +LLYQG +
Sbjct: 281 QPKTQLVSATLDGISPRISFPVVRIQLNITLNLQILVENPNHASFKHGSGQSILLYQGEQ 340

Query: 128 VGDTRLHPGQIPARGTSTLICLLTVEVDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVT 187
           VGD  ++PG IP R ++T+   LT++VDK A S    L  DI AGQL ++T TRIPGRVT
Sbjct: 341 VGDVEIYPGNIPGRRSTTIPSRLTLQVDKVA-SETLHLVQDILAGQLAMDTRTRIPGRVT 400

Query: 188 FLGIFHKHIVSTSDCQIVIGFPDLNIKSQDCKNHNK 212
           FLG+  KH+V+ SDC  VI  P++ ++SQ+CK   K
Sbjct: 401 FLGLIRKHVVAISDCHFVIAVPEMKVRSQECKERTK 435

[Close]

BLAST of Spo19695.1 vs. UniProtKB/TrEMBL
Match: C5DB61_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=40N03_30 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.900e-50
Identity = 96/190 (50.53%), Postives = 139/190 (73.16%), Query Frame = 1


		  
Query: 22  RPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQVASASLDGVAPRISFPAIKVE 81
           R RRC +A+  ++ L++ + +V  I+ +TVFK +  +TQ+ SA+LDG++PRISFP ++++
Sbjct: 26  RRRRCLIAIGVVIFLIMLLFIVLLILVLTVFKAKQPKTQLVSATLDGISPRISFPVVRIQ 85

Query: 82  LNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTRLHPGQIPARGTSTLICLLTVE 141
           LNITLNL +L++NPNHASFK G G+ +LLYQG +VGD  ++PG IP R ++T+   LT++
Sbjct: 86  LNITLNLQILVENPNHASFKHGSGQSILLYQGGQVGDVEIYPGNIPGRRSTTIPSRLTLQ 145

Query: 142 VDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIFHKHIVSTSDCQIVIGFPDLNI 201
           VD  A S    L  DI AGQL ++T TRIPGRVTFLG+  KH+V+ SDC  VI  P++ +
Sbjct: 146 VDMVA-SETLHLVQDILAGQLAMDTRTRIPGRVTFLGLIRKHVVAISDCHFVIAVPEMKV 205

Query: 202 KSQDCKNHNK 212
           +SQ+CK   K
Sbjct: 206 RSQECKERTK 214

[Close]

BLAST of Spo19695.1 vs. TAIR (Arabidopsis)
Match: AT3G05975.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 115.9 bits (289), Expect = 3.000e-26
Identity = 66/189 (34.92%), Postives = 108/189 (57.14%), Query Frame = 1


		  
Query: 24  RRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQVASASLDGVAPRISFPAIKVELN 83
           RR    V  I+ +L  I +   I+   VFK +    Q  S+++DG++  IS P  +V+LN
Sbjct: 4   RRICCIVSGIIFVLFVIFMTALILA-QVFKPKHPILQTVSSTVDGISTNISLP-YEVQLN 63

Query: 84  ITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTRLHPGQIPARGTSTLICLLTVEVD 143
            TL L +L++NPN A F+    E ++ Y+   VG+  L    +PA+G+  L C L +++D
Sbjct: 64  FTLTLEMLLKNPNVADFEYKTVENLVYYRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLD 123

Query: 144 KFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIFHKHIVSTSDCQIVIGFPDLNIKS 203
           KF  +    +  D+  G++V+ET  ++PG++T LGIF   + S S C +V+GFP + ++ 
Sbjct: 124 KFV-ANLGDIVQDVLHGKIVMETRAKMPGKITLLGIFKIPLDSISHCNLVLGFPSMVVED 183

Query: 204 QDCKNHNKL 213
           Q C    KL
Sbjct: 184 QVCDLKTKL 189

[Close]

BLAST of Spo19695.1 vs. TAIR (Arabidopsis)
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 111.3 bits (277), Expect = 7.300e-25
Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 1


		  
Query: 21  QRPRRCKVAVLAILILLLAIILVGFIVGVTVFKVRSARTQVASASLDGVAPRISFPAIKV 80
           +R R CK+ +   ++L+L I +V  I+  T+FK +   T + S ++D +   ++   +KV
Sbjct: 46  RRKRNCKICICFTILLILLIAIVIVILAFTLFKPKRPTTTIDSVTVDRLQASVNPLLLKV 105

Query: 81  ELNITLNLTLLIQNPNHASFKSGEGEGVLLYQGNRVGDTRLHPGQIPARGTSTLICLLTV 140
            LN+TLN+ L ++NPN   F       +L Y+G  +G+  L   +I AR T  L   LT+
Sbjct: 106 LLNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTL 165

Query: 141 EVDKFADSGPSSLFTDIAAGQLVLETNTRIPGRVTFLGIFHKHIVSTSDCQIVIGFPDLN 200
             D+      + L +D+ AG + L T  ++ G+VT L IF   + S+S C + I   D N
Sbjct: 166 MADRLLSE--TQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRN 225

Query: 201 IKSQDCKNHNKL 213
           + SQ CK   KL
Sbjct: 226 VTSQHCKYSTKL 235

The following BLAST results are available for this feature:

BLAST of Spo19695.1 vs. NCBI nr
BLAST of Spo19695.1 vs. UniProtKB/TrEMBL
BLAST of Spo19695.1 vs. ExPASy Swiss-Prot
BLAST of Spo19695.1 vs. TAIR (Arabidopsis)

BLAST of Spo19695.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902189327\|gb\|KNA11352.1\|	1.3e-111	98.5	hypothetical protein SOVF_1360...	[more]
gi\|731344440\|ref\|XP_010683422.1\|	1.0e-76	76.8	PREDICTED: uncharacterized pro...	[more]
gi\|870854728\|gb\|KMT06476.1\|	1.0e-76	76.8	hypothetical protein BVRB_7g15...	[more]
gi\|595829700\|ref\|XP_007205920.1\|	2.6e-56	53.4	hypothetical protein PRUPE_ppa...	[more]
gi\|645221280\|ref\|XP_008244364.1\|	2.2e-55	52.4	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo19695.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QVP6_SPIOL	8.8e-112	98.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8ETG2_BETVU	7.1e-77	76.8	Uncharacterized protein OS=Bet...	[more]
M5W080_PRUPE	1.8e-56	53.4	Uncharacterized protein OS=Pru...	[more]
A5BBS3_VITVI	6.7e-51	46.7	Putative uncharacterized prote...	[more]
C5DB61_VITVI	1.9e-50	50.5	Putative uncharacterized prote...	[more]

BLAST of Spo19695.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo19695.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G05975.1	3.0e-26	34.9	Late embryogenesis abundant (L...	[more]
AT3G54200.1	7.3e-25	33.3	Late embryogenesis abundant (L...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 89..184 score: 1.3
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 21..212 score: 1.5
None	No IPR available	PANTHER	PTHR31852:SF3	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 21..212 score: 1.5
None	No IPR available	unknown	SSF117070	LEA14-like	coord: 82..146 score: 6.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016049	cell growth
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0007030	Golgi organization
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0007033	vacuole organization
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0000902	cell morphogenesis
cellular_component	GO:0016020	membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16719	0.75	Barchart \| Table
Spo01261	0.68	Barchart \| Table