Spo19607 (gene)

Overview
NameSpo19607
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L16, chloroplastic
LocationSpoScf_06359 : 4101 .. 4448 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACTTGAACCTGCTTGGATCACGTCTAGGCAAATAGAAGCAGGGCGGCGAGCAATGACACGAAATGCGCGTCGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCCGCGGAAACCCGTATGGGTTCGGGGAAAGGATCTCCCGAATATTGGGTAGCTGTTGTCAAACCAGGTCGAATACTTTATGAAATAAGCGGAGTAGCCGAAAATATAGCCCGAAGGGCTGTCGCAATAGCGGCATCGAAAATGCCTAATAAGATAGCAATTACAACCCAAGAAGTTATAAGGACCTGGCCATGGATTTGGAAACCTCCTATTTGCCAATAA

mRNA sequence

GCACTTGAACCTGCTTGGATCACGTCTAGGCAAATAGAAGCAGGGCGGCGAGCAATGACACGAAATGCGCGTCGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCCGCGGAAACCCGTATGGGTTCGGGGAAAGGATCTCCCGAATATTGGGTAGCTGTTGTCAAACCAGGTCGAATACTTTATGAAATAAGCGGAGTAGCCGAAAATATAGCCCGAAGGGCTGTCGCAATAGCGGCATCGAAAATGCCTAATAAGATAGCAATTACAACCCAAGAAGTTATAAGGACCTGGCCATGGATTTGGAAACCTCCTATTTGCCAATAA

Coding sequence (CDS)

GCACTTGAACCTGCTTGGATCACGTCTAGGCAAATAGAAGCAGGGCGGCGAGCAATGACACGAAATGCGCGTCGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCCGCGGAAACCCGTATGGGTTCGGGGAAAGGATCTCCCGAATATTGGGTAGCTGTTGTCAAACCAGGTCGAATACTTTATGAAATAAGCGGAGTAGCCGAAAATATAGCCCGAAGGGCTGTCGCAATAGCGGCATCGAAAATGCCTAATAAGATAGCAATTACAACCCAAGAAGTTATAAGGACCTGGCCATGGATTTGGAAACCTCCTATTTGCCAATAA

Protein sequence

ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVIRTWPWIWKPPICQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo19607.1Spo19607.1mRNA


Homology
[Close]
BLAST of Spo19607.1 vs. NCBI nr
Match: gi|11497564|ref|NP_054972.1| (ribosomal protein L16 [Spinacia oleracea])

HSP 1 Score: 185.7 bits (470), Expect = 4.700e-44
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 36  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 95

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYEISGVAENIARRAVAIAASKMP    I TQ +I
Sbjct: 96  VVKPGRILYEISGVAENIARRAVAIAASKMP----IRTQFII 133
[Close]
BLAST of Spo19607.1 vs. NCBI nr
Match: gi|255706978|dbj|BAH95839.1| (ribosomal protein L16 [Spinacia oleracea])

HSP 1 Score: 185.7 bits (470), Expect = 4.700e-44
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 19  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 78

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYEISGVAENIARRAVAIAASKMP    I TQ +I
Sbjct: 79  VVKPGRILYEISGVAENIARRAVAIAASKMP----IRTQFII 116
[Close]
BLAST of Spo19607.1 vs. NCBI nr
Match: gi|932252370|gb|ALG63326.1| (ribosomal protein L16 (chloroplast) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 185.3 bits (469), Expect = 6.100e-44
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 37  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 96

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYEISGVAENIARRA+AIAASKMP    I TQ +I
Sbjct: 97  VVKPGRILYEISGVAENIARRAIAIAASKMP----IRTQFII 134
[Close]
BLAST of Spo19607.1 vs. NCBI nr
Match: gi|836613869|ref|YP_009143677.1| (ribosomal protein L16 (chloroplast) [Salicornia brachiata])

HSP 1 Score: 185.3 bits (469), Expect = 6.100e-44
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 36  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 95

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYEISGVAENIARRA+AIAASKMP    I TQ +I
Sbjct: 96  VVKPGRILYEISGVAENIARRAIAIAASKMP----IRTQFII 133
[Close]
BLAST of Spo19607.1 vs. NCBI nr
Match: gi|628819131|gb|AHY80564.1| (ribosomal protein L16 (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 185.3 bits (469), Expect = 6.100e-44
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 37  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 96

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYEISGVAENIARRA+AIAASKMP    I TQ +I
Sbjct: 97  VVKPGRILYEISGVAENIARRAIAIAASKMP----IRTQFII 134
[Close]
BLAST of Spo19607.1 vs. UniProtKB/TrEMBL
Match: C6L8P0_SPIOL (50S ribosomal protein L16, chloroplastic (Fragment) OS=Spinacia oleracea PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.300e-44
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 19  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 78

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYEISGVAENIARRAVAIAASKMP    I TQ +I
Sbjct: 79  VVKPGRILYEISGVAENIARRAVAIAASKMP----IRTQFII 116
[Close]
BLAST of Spo19607.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QY65_SALBI (50S ribosomal protein L16, chloroplastic OS=Salicornia bigelovii GN=rpl16 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.300e-44
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 36  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 95

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYEISGVAENIARRA+AIAASKMP    I TQ +I
Sbjct: 96  VVKPGRILYEISGVAENIARRAIAIAASKMP----IRTQFII 133
[Close]
BLAST of Spo19607.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXE9_SALEU (50S ribosomal protein L16, chloroplastic OS=Salicornia europaea GN=rpl16 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.300e-44
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 36  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 95

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYEISGVAENIARRA+AIAASKMP    I TQ +I
Sbjct: 96  VVKPGRILYEISGVAENIARRAIAIAASKMP----IRTQFII 133
[Close]
BLAST of Spo19607.1 vs. UniProtKB/TrEMBL
Match: A0A023ZQ65_BETVU (Ribosomal protein L16 OS=Beta vulgaris subsp. vulgaris GN=rpl16 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.300e-44
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 37  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 96

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYEISGVAENIARRA+AIAASKMP    I TQ +I
Sbjct: 97  VVKPGRILYEISGVAENIARRAIAIAASKMP----IRTQFII 134
[Close]
BLAST of Spo19607.1 vs. UniProtKB/TrEMBL
Match: A0A0N9LTA0_BETVU (50S ribosomal protein L16, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=rpl16 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.300e-44
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 37  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 96

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYEISGVAENIARRA+AIAASKMP    I TQ +I
Sbjct: 97  VVKPGRILYEISGVAENIARRAIAIAASKMP----IRTQFII 134
[Close]
BLAST of Spo19607.1 vs. ExPASy Swiss-Prot
Match: RK16_SPIOL (50S ribosomal protein L16, chloroplastic OS=Spinacia oleracea GN=rpl16 PE=1 SV=2)

HSP 1 Score: 185.7 bits (470), Expect = 2.900e-46
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 36  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 95

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYEISGVAENIARRAVAIAASKMP    I TQ +I
Sbjct: 96  VVKPGRILYEISGVAENIARRAVAIAASKMP----IRTQFII 133
[Close]
BLAST of Spo19607.1 vs. ExPASy Swiss-Prot
Match: RK16_HELAN (50S ribosomal protein L16, chloroplastic OS=Helianthus annuus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.800e-44
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 37  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 96

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMP 92
           VVKPGRILYE+ GV ENIARRA++IAASKMP
Sbjct: 97  VVKPGRILYEMGGVTENIARRAISIAASKMP 127
[Close]
BLAST of Spo19607.1 vs. ExPASy Swiss-Prot
Match: RK16_MORIN (50S ribosomal protein L16, chloroplastic OS=Morus indica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.800e-44
Identity = 89/102 (87.25%), Postives = 94/102 (92.16%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKP+TVRP ETRMGSGKGSPEYWVA
Sbjct: 36  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPITVRPTETRMGSGKGSPEYWVA 95

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQEVI 103
           VVKPGRILYE+SGV ENIAR+A+AIAASKMP    I TQ +I
Sbjct: 96  VVKPGRILYEMSGVPENIARKAIAIAASKMP----IRTQFII 133
[Close]
BLAST of Spo19607.1 vs. ExPASy Swiss-Prot
Match: RK16_GOSHI (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.800e-44
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTVRP ETRMGSGKGSPEYWVA
Sbjct: 36  ALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVA 95

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMPNK 94
           VVKPGRILYE+SGVAENIAR+A++IAASKMP K
Sbjct: 96  VVKPGRILYEMSGVAENIARKAISIAASKMPIK 128
[Close]
BLAST of Spo19607.1 vs. ExPASy Swiss-Prot
Match: RK16_GUIAB (50S ribosomal protein L16, chloroplastic OS=Guizotia abyssinica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.800e-44
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1 

		  

Query: 1   ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 60
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA
Sbjct: 37  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVA 96

Query: 61  VVKPGRILYEISGVAENIARRAVAIAASKMP 92
           VVKPGRILYE+ GV ENIARRA++IAASKMP
Sbjct: 97  VVKPGRILYEMGGVTENIARRAISIAASKMP 127
[Close]
BLAST of Spo19607.1 vs. TAIR (Arabidopsis)
Match: ATCG00790.1 (ribosomal protein L16)

HSP 1 Score: 174.9 bits (442), Expect = 2.900e-44
Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 1 

		  

Query: 2   LEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAV 61
           LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAV
Sbjct: 37  LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAV 96

Query: 62  VKPGRILYEISGVAENIARRAVAIAASKMPNKIAITTQE 101
           VKPG+ILYE+ GV ENIAR+A++IAASKMP K      E
Sbjct: 97  VKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 135
[Close]
BLAST of Spo19607.1 vs. TAIR (Arabidopsis)
Match: AT2G28830.1 (PLANT U-BOX 12)

HSP 1 Score: 141.4 bits (355), Expect = 3.600e-34
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 1 

		  

Query: 2   LEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAV 61
           LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVTVRP ETRMG GKG+P +WVAV
Sbjct: 864 LEPAWITSRQIEAGRRAMTRNIGRGLTVRVHIFADKPVTVRPPETRMGRGKGAPAFWVAV 923

Query: 62  VKPGRILYEISGVAENIARRAVAIAASKMPNK 94
           VKPG+I+YE+ GV+E +AR A++IAASK+P K
Sbjct: 924 VKPGKIIYEMGGVSEKVAREAISIAASKLPAK 955
[Close]
BLAST of Spo19607.1 vs. TAIR (Arabidopsis)
Match: ATMG00080.1 (ribosomal protein L16)

HSP 1 Score: 82.0 bits (201), Expect = 2.600e-16
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 1 

		  

Query: 7   ITSRQIEAGRRA--------MTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYW 66
           ++ R IEA RRA        M+   RR GKIWVR+F D P+T +P E RMG GKG+P  W
Sbjct: 78  LSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGW 137

Query: 67  VAVVKPGRILYEISGVAENIARRAVAIAASK 90
           +A V  G+I +E+ GV+   AR+A  +AA K
Sbjct: 138 IARVSTGQIPFEMDGVSLANARQAATLAAHK 168
The following BLAST results are available for this feature:
BLAST of Spo19607.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|11497564|ref|NP_054972.1|4.7e-4493.1ribosomal protein L16 [Spinaci... [more]
gi|255706978|dbj|BAH95839.1|4.7e-4493.1ribosomal protein L16 [Spinaci... [more]
gi|932252370|gb|ALG63326.1|6.1e-4492.1ribosomal protein L16 (chlorop... [more]
gi|836613869|ref|YP_009143677.1|6.1e-4492.1ribosomal protein L16 (chlorop... [more]
gi|628819131|gb|AHY80564.1|6.1e-4492.1ribosomal protein L16 (plastid... [more]
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BLAST of Spo19607.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
C6L8P0_SPIOL3.3e-4493.150S ribosomal protein L16, chl... [more]
A0A0G2QY65_SALBI4.3e-4492.150S ribosomal protein L16, chl... [more]
A0A0G2QXE9_SALEU4.3e-4492.150S ribosomal protein L16, chl... [more]
A0A023ZQ65_BETVU4.3e-4492.1Ribosomal protein L16 OS=Beta ... [more]
A0A0N9LTA0_BETVU4.3e-4492.150S ribosomal protein L16, chl... [more]
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BLAST of Spo19607.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RK16_SPIOL2.9e-4693.150S ribosomal protein L16, chl... [more]
RK16_HELAN2.8e-4494.550S ribosomal protein L16, chl... [more]
RK16_MORIN2.8e-4487.250S ribosomal protein L16, chl... [more]
RK16_GOSHI2.8e-4492.450S ribosomal protein L16, chl... [more]
RK16_GUIAB2.8e-4494.550S ribosomal protein L16, chl... [more]
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BLAST of Spo19607.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
ATCG00790.12.9e-4484.8ribosomal protein L16[more]
AT2G28830.13.6e-3472.8PLANT U-BOX 12[more]
ATMG00080.12.6e-1647.2ribosomal protein L16[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000114Ribosomal protein L16PRINTSPR00060RIBOSOMALL16coord: 23..52
score: 3.1E-34coord: 7..18
score: 3.1E-34coord: 53..82
score: 3.1
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 1..93
score: 1.0
IPR000114Ribosomal protein L16TIGRFAMsTIGR01164TIGR01164coord: 1..91
score: 9.6
IPR016180Ribosomal protein L10e/L16GENE3D3.90.1170.10coord: 1..100
score: 1.9
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 1..96
score: 1.4
IPR016180Ribosomal protein L10e/L16unknownSSF54686Ribosomal protein L16p/L10ecoord: 1..100
score: 2.22
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00586RIBOSOMAL_L16_1coord: 24..35
scor
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00701RIBOSOMAL_L16_2coord: 47..58
scor
NoneNo IPR availablePANTHERPTHR12220:SF14SUBFAMILY NOT NAMEDcoord: 1..93
score: 1.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006396 RNA processing
biological_process GO:0006334 nucleosome assembly
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0006412 translation
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005634 nucleus
cellular_component GO:0000786 nucleosome
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0005524 ATP binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity
RNA-Seq Expression