Spo19530 (gene)

Overview
NameSpo19530
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionNADH-ubiquinone oxidoreductase chain
LocationSpoScf_22756 : 63 .. 1005 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCTTAAGGAGAAAGTCTTTGCAACCGAAGTGCGCCAAGGGGCCGAGTGACGTGCCAGCGCTCCAGATTTTTTGCCAGCACGTAGCTGTGCTGTCAGTAAGAAGGGAGCCGGCGCCTTTCGAAGTACTTTCTAGTCTTTCGTTTTCAAAAATTTCTTTAAGATAGAAAGGGCTTTTCTCGCTTGTTTAGTAAGGTCCAGTTTTTGGCCTTATCTTGCAGGTGACGACGACGTCGAGTTGGCGGCGGAAAAGACTCGGCATTCAGGCGAGCCGCCCGGTGGTGTGGTACGTAGTGGGTTTAGTACGCTCCGCCAAAACGGCTCCGAAACAAACAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGNGAATATGGCTACTTTCTTTACAATTCTTCGCATCGAAGAAAGCTCTTTATCAAGTCAATTCGACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGGCTTCTGTGTACCACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTATTCGACTGGGGTGAAGTCGTAA

mRNA sequence

GCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCTTAAGGAGAAAGTCTTTGCAACCGAAGTGACGACGACGTCGAGTTGGCGGCGGAAAAGACTCGGCATTCAGGCGAGCCGCCCGGTGGTGTGGTACGTAGTGGGTTTAGTACGCTCCGCCAAAACGGCTCCGAAACAAACAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGNGAATATGGCTACTTTCTTTACAATTCTTCGCATCGAAGAAAGCTCTTTATCAAGTCAATTCGACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGGCTTCTGTGTACCACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTATTCGACTGGGGTGAAGTCGTAA

Coding sequence (CDS)

GCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCTTAAGGAGAAAGTCTTTGCAACCGAAGTGACGACGACGTCGAGTTGGCGGCGGAAAAGACTCGGCATTCAGGCGAGCCGCCCGGTGGTGTGGTACGTAGTGGGTTTAGTACGCTCCGCCAAAACGGCTCCGAAACAAACAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGNGAATATGGCTACTTTCTTTACAATTCTTCGCATCGAAGAAAGCTCTTTATCAAGTCAATTCGACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGGCTTCTGTGTACCACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTATTCGACTGGGGTGAAGTCGTAA

Protein sequence

AAWLSSARVVRCLVKSYNERNPRFVLLRHALKEKVFATEVTTTSSWRRKRLGIQASRPVVWYVVGLVRSAKTAPKQTKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLENMKLESLVIADQHAAVNMYPGPVHTARHTLGIXNMATFFTILRIEESSLSSQFDPGPVHTARHTLGIGFARSIGPMITHGFCVPLVPQRLLVVLLAHTTVGYSTGVKS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo19530.1Spo19530.1mRNA


Homology
[Close]
BLAST of Spo19530.1 vs. NCBI nr
Match: gi|527209880|gb|EPS74490.1| (hypothetical protein M569_00256 [Genlisea aurea])

HSP 1 Score: 219.9 bits (559), Expect = 4.900e-54
Identity = 118/178 (66.29%), Postives = 123/178 (69.10%), Query Frame = 1 

		  

Query: 73  APKQTKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC 132
           AP++ KR VPHSR TASDILEEGGD+VKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC
Sbjct: 42  APEERKRRVPHSRRTASDILEEGGDNVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC 101

Query: 133 LSSDCSLQLENMKLESLVIADQHAAVNMYPGPVHTARHTLGIXNMATFFTILRIEESSLS 192
           LSSDCSLQL NMKL+SLVIA QHAAVNMYPGPVHTARHTLGI                 +
Sbjct: 102 LSSDCSLQLGNMKLKSLVIAHQHAAVNMYPGPVHTARHTLGI---------------GFA 161

Query: 193 SQFDPGPVHTARHTLGIGFARSIGPMITHGFCVPLVPQRLLVVLLAHTTVGYSTGVKS 251
               P   H    TL                     PQRLLVVLLAHTTVG STGVKS
Sbjct: 162 RSIGPTIAHDFCGTLV--------------------PQRLLVVLLAHTTVGSSTGVKS 184
[Close]
BLAST of Spo19530.1 vs. NCBI nr
Match: gi|442803208|gb|AGC78943.1| (hypothetical protein (mitochondrion) [Vicia faba])

HSP 1 Score: 199.5 bits (506), Expect = 6.800e-48
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 1 

		  

Query: 81  VPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ 140
           +PHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ
Sbjct: 1   MPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ 60

Query: 141 LENMKLESLVIADQHAAVNMYPGPVHTARHTLGI 175
           L NMKLESLVIADQHAAVNMYPGPVHTARHTLGI
Sbjct: 61  LGNMKLESLVIADQHAAVNMYPGPVHTARHTLGI 94
[Close]
BLAST of Spo19530.1 vs. NCBI nr
Match: gi|94502665|ref|YP_588403.1| (hypothetical protein ZeamMp158 (mitochondrion) [Zea mays subsp. mays])

HSP 1 Score: 168.7 bits (426), Expect = 1.300e-38
Identity = 83/109 (76.15%), Postives = 89/109 (81.65%), Query Frame = 1 

		  

Query: 40  VTTTSSWRRKRLGIQASRPVVWYVVGLVRSAKT---APKQTKRCVPHSRGTASDILEEGG 99
           VTTTSSWRR++   +   P      G+VRS  +   APKQ KRCVPHSRGTAS+ILEEGG
Sbjct: 8   VTTTSSWRRRKTRHEGQPPG-----GVVRSGNSTRPAPKQRKRCVPHSRGTASEILEEGG 67

Query: 100 DDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLENMK 146
           DDVKSAWPLWAGPHTCYNGN NGKQGCKAERIRKDCLSSDCSLQL NMK
Sbjct: 68  DDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMK 111
[Close]
BLAST of Spo19530.1 vs. NCBI nr
Match: gi|775286450|dbj|GAN86215.1| (hypothetical protein Gain_0022_002 [Komagataeibacter intermedius TF2])

HSP 1 Score: 134.8 bits (338), Expect = 2.100e-28
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 1 

		  

Query: 83  HSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLE 142
           HS+GTA D  EEGGDDVKS+WPL  G HTCYNG  +GK G   E I K  LSSDC+LQLE
Sbjct: 4   HSKGTAGDKPEEGGDDVKSSWPLCPGLHTCYNGGDSGKPGGDTEPISKSRLSSDCTLQLE 63

Query: 143 NMKLESLVIADQHAAVNMYPGPVHTARHTLGI 175
            MK+ESLVIADQHAAVN +PG VHTARHT+G+
Sbjct: 64  CMKVESLVIADQHAAVNTFPGLVHTARHTMGV 95
[Close]
BLAST of Spo19530.1 vs. NCBI nr
Match: gi|775290090|dbj|GAN74957.1| (hypothetical protein Apmu_0247_01 [Acidiphilium multivorum AIU301])

HSP 1 Score: 133.3 bits (334), Expect = 6.000e-28
Identity = 65/91 (71.43%), Postives = 71/91 (78.02%), Query Frame = 1 

		  

Query: 83  HSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLE 142
           HS GTA D  EEGGDDVKS+WPL  G HTCYNG  +GK G   E I K  LSSDC+LQLE
Sbjct: 51  HSEGTAGDKPEEGGDDVKSSWPLCPGLHTCYNGGDSGKPGGDTELISKSRLSSDCTLQLE 110

Query: 143 NMKLESLVIADQHAAVNMYPGPVHTARHTLG 174
            MK+ESLVIADQHAAVN +PG VHTARHT+G
Sbjct: 111 CMKVESLVIADQHAAVNTFPGLVHTARHTMG 141
[Close]
BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Match: S8D505_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_00256 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.400e-54
Identity = 118/178 (66.29%), Postives = 123/178 (69.10%), Query Frame = 1 

		  

Query: 73  APKQTKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC 132
           AP++ KR VPHSR TASDILEEGGD+VKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC
Sbjct: 42  APEERKRRVPHSRRTASDILEEGGDNVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDC 101

Query: 133 LSSDCSLQLENMKLESLVIADQHAAVNMYPGPVHTARHTLGIXNMATFFTILRIEESSLS 192
           LSSDCSLQL NMKL+SLVIA QHAAVNMYPGPVHTARHTLGI                 +
Sbjct: 102 LSSDCSLQLGNMKLKSLVIAHQHAAVNMYPGPVHTARHTLGI---------------GFA 161

Query: 193 SQFDPGPVHTARHTLGIGFARSIGPMITHGFCVPLVPQRLLVVLLAHTTVGYSTGVKS 251
               P   H    TL                     PQRLLVVLLAHTTVG STGVKS
Sbjct: 162 RSIGPTIAHDFCGTLV--------------------PQRLLVVLLAHTTVGSSTGVKS 184
[Close]
BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Match: R4IV41_VICFA (Uncharacterized protein OS=Vicia faba GN=rrn18 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 4.800e-48
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 1 

		  

Query: 81  VPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ 140
           +PHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ
Sbjct: 1   MPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ 60

Query: 141 LENMKLESLVIADQHAAVNMYPGPVHTARHTLGI 175
           L NMKLESLVIADQHAAVNMYPGPVHTARHTLGI
Sbjct: 61  LGNMKLESLVIADQHAAVNMYPGPVHTARHTLGI 94
[Close]
BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Match: M0ZXY3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004057 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 4.300e-41
Identity = 82/88 (93.18%), Postives = 82/88 (93.18%), Query Frame = 1 

		  

Query: 87  TASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLENMKL 146
           TASDILEEGGDDVK AWPLWAGPH CYNGNYNGKQGCKAERIRKDCLSSDCSLQL NMKL
Sbjct: 25  TASDILEEGGDDVKPAWPLWAGPHMCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKL 84

Query: 147 ESLVIADQHAAVNMYPGPVHTARHTLGI 175
           ES VIADQH AVNMYPG VHTARHTLGI
Sbjct: 85  ESPVIADQHVAVNMYPGLVHTARHTLGI 112
[Close]
BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Match: K4BH93_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 6.200e-40
Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 1 

		  

Query: 87  TASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLENMKL 146
           TASDILEEGGDDVKSA PLWAG HTCYNGNYNGKQGCKAERI KDCLSSDCSLQL NMK+
Sbjct: 73  TASDILEEGGDDVKSALPLWAGTHTCYNGNYNGKQGCKAERIWKDCLSSDCSLQLGNMKV 132

Query: 147 ESLVIADQHAAVNMYPGPVHTARHTLGI 175
           ES+VIADQHAAVNMYPGPVHTA HTLGI
Sbjct: 133 ESIVIADQHAAVNMYPGPVHTACHTLGI 160
[Close]
BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Match: A0A0C4B3M7_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 9.000e-39
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1 

		  

Query: 92  LEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLENMKLESLVI 151
           +EEGGDDVKSAWPLWAGPHTCYNGN NGKQGCKAE+IRKDCLSSDCSLQL NM L+SLVI
Sbjct: 1   MEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAEQIRKDCLSSDCSLQLGNMNLKSLVI 60

Query: 152 ADQHAAVNMYPGPVHTARHTLGI 175
           ADQHAAVNMYPGPVHT RHTLGI
Sbjct: 61  ADQHAAVNMYPGPVHTVRHTLGI 83
The following BLAST results are available for this feature:
BLAST of Spo19530.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|527209880|gb|EPS74490.1|4.9e-5466.2hypothetical protein M569_0025... [more]
gi|442803208|gb|AGC78943.1|6.8e-4896.8hypothetical protein (mitochon... [more]
gi|94502665|ref|YP_588403.1|1.3e-3876.1hypothetical protein ZeamMp158... [more]
gi|775286450|dbj|GAN86215.1|2.1e-2870.6hypothetical protein Gain_0022... [more]
gi|775290090|dbj|GAN74957.1|6.0e-2871.4hypothetical protein Apmu_0247... [more]
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BLAST of Spo19530.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
S8D505_9LAMI3.4e-5466.2Uncharacterized protein OS=Gen... [more]
R4IV41_VICFA4.8e-4896.8Uncharacterized protein OS=Vic... [more]
M0ZXY3_SOLTU4.3e-4193.1Uncharacterized protein OS=Sol... [more]
K4BH93_SOLLC6.2e-4092.0Uncharacterized protein OS=Sol... [more]
A0A0C4B3M7_WHEAT9.0e-3991.5Uncharacterized protein OS=Tri... [more]
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BLAST of Spo19530.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo19530.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34890FAMILY NOT NAMEDcoord: 207..250
score: 1.1E-89coord: 87..176
score: 1.1
NoneNo IPR availablePANTHERPTHR34890:SF1SUBFAMILY NOT NAMEDcoord: 87..176
score: 1.1E-89coord: 207..250
score: 1.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0009635 response to herbicide
biological_process GO:0034968 histone lysine methylation
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0015979 photosynthesis
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0006554 lysine catabolic process
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0010287 plastoglobule
cellular_component GO:0005743 mitochondrial inner membrane
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0010242 oxygen evolving activity
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0008289 lipid binding
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0009055 electron transfer activity
RNA-Seq Expression