Spo19475 (gene)

Overview
NameSpo19475
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 77459872 .. 77460180 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGGAGGGTGGAGATTTTGGAAATACAAGAGTTTGATGATGGAAATCCCCAACAACAACAACAACAACAACAACAACAACAACAGCCCCTTGATAATCAGCCACATTTGGAAAATGGTCATGCTCATGTTGCTTGATGTATATTCCCTATGATTTTCTTTTTCTTTGTGAAACCCTTGAAAGATTGTAAGTGTCAAGTTATAAATCATACAACTATTTTATAGTTTTTTTTTATTATTAATTGCGGAGTACAAATTAATCTAAGCGTAAAACTATTCAATAATATTAAAACATTATTTCTAAAA

mRNA sequence

ATGAATCGGAGGGTGGAGATTTTGGAAATACAAGAGTTTGATGATGGAAATCCCCAACAACAACAACAACAACAACAACAACAACAACAGCCCCTTGATAATCAGCCACATTTGGAAAATGGTCATGCTCATGTTGCTTGATGTATATTCCCTATGATTTTCTTTTTCTTTGTGAAACCCTTGAAAGATTGTAAGTGTCAAGTTATAAATCATACAACTATTTTATAGTTTTTTTTTATTATTAATTGCGGAGTACAAATTAATCTAAGCGTAAAACTATTCAATAATATTAAAACATTATTTCTAAAA

Coding sequence (CDS)

ATGAATCGGAGGGTGGAGATTTTGGAAATACAAGAGTTTGATGATGGAAATCCCCAACAACAACAACAACAACAACAACAACAACAACAGCCCCTTGATAATCAGCCACATTTGGAAAATGGTCATGCTCATGTTGCTTGA

Protein sequence

MNRRVEILEIQEFDDGNPQQQQQQQQQQQQPLDNQPHLENGHAHVA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo19475.1Spo19475.1mRNA


Homology
[Close]
BLAST of Spo19475.1 vs. NCBI nr
Match: gi|902082070|gb|KNA03147.1| (hypothetical protein SOVF_211910 [Spinacia oleracea])

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-13
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 

		  

Query: 1   MNRRVEILEIQEFDDGNPQQQQQQQQQQQQPLDNQPHLENGHAHVA 47
           MNRRVEILEIQEFDDGNP QQQQQQQQQQQPLDNQPHLENGHAHVA
Sbjct: 57  MNRRVEILEIQEFDDGNP-QQQQQQQQQQQPLDNQPHLENGHAHVA 101
[Close]
BLAST of Spo19475.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7F0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_211910 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.500e-13
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 

		  

Query: 1   MNRRVEILEIQEFDDGNPQQQQQQQQQQQQPLDNQPHLENGHAHVA 47
           MNRRVEILEIQEFDDGNP QQQQQQQQQQQPLDNQPHLENGHAHVA
Sbjct: 57  MNRRVEILEIQEFDDGNP-QQQQQQQQQQQPLDNQPHLENGHAHVA 101
The following BLAST results are available for this feature:
BLAST of Spo19475.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902082070|gb|KNA03147.1|5.0e-1397.8hypothetical protein SOVF_2119... [more]
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BLAST of Spo19475.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9Q7F0_SPIOL3.5e-1397.8Uncharacterized protein OS=Spi... [more]
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BLAST of Spo19475.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo19475.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006810 transport
biological_process GO:0051301 cell division
biological_process GO:0006680 glucosylceramide catabolic process
biological_process GO:0009987 cellular process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010306 rhamnogalacturonan II biosynthetic process
biological_process GO:0009103 lipopolysaccharide biosynthetic process
biological_process GO:0032502 developmental process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006281 DNA repair
biological_process GO:0009737 response to abscisic acid
biological_process GO:0080168 abscisic acid transport
biological_process GO:0008152 metabolic process
biological_process GO:0055085 transmembrane transport
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0000785 chromatin
cellular_component GO:0005622 intracellular
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0005215 transporter activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0043531 ADP binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0004348 glucosylceramidase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008676 3-deoxy-8-phosphooctulonate synthase activity
molecular_function GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005488 binding
RNA-Seq Expression