Spo19459 (gene)

Overview
NameSpo19459
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein 5 alpha, chloroplastic (50S ribosomal protein L40) (CL40) (Plastid-specific 50S ribosomal protein 5 alpha) (PSRP-5) (50S ribosomal protein 5 beta, chloroplastic) (50S ribosomal protein 5 gamma, chloroplastic) (Precursor)
LocationSpoScf_03631 : 3424 .. 5995 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTACATTGATTTAATTAATAACATGGGTCACCGCAACTTTGAGGTCAATACTAAATGGAGTTTACCATATCTTCTCCTTAAAATAAGAATAATGTGATCCCCTAAAAAAATACTGAGTATGTGAAAACGCAAATTAAAGACCCGCCCTCGCTCTTACAAAAGCTTATCCAAAAGCCACCCTCGAATTCTACTGCGTTCAGCAGAGAGATGGCACTCCTTTCTCCTCTCCTTTCTCTCTCCTCTGTCCCTCCTATCACTTCCATTGCCGTTTCTTCTTCTTCCTTCCGTGAGTATTTTCTCCCTTTTACTTTCTGGGTTTGAGTTTTCTGCATTATTCATATGATTATGTTACTGAATTTTGATTAGTATCTATCTTTTTTGTGTTTTACATTGTTCAATTGTTTTAGTGCTTCAATACCAACTTTCTGCATCCTGGTTTTCTTTATTGATTTGGTTTATCTTAATTTTGATTTTCATTGAGGCATTTCGTCGAACAGTTATAGTGCTTCTTGGTTTTATGTCATTATGGGTCCAATTTTATGTTATGCGTTATCTGTTTAATCATTAGTTGATGTTAAATTGATTGGAATTCGGACCAATTTTAAGTTACTACTTTGCTCATGGGTTCAATTGGGTTCCCAAATTTACTCTTTTCCCCCAGTTCAATCTAATTGGTTGAATTTCCAATTTGTGTACTCTGTAATTTTAAGTAGTTTTATGGGATTAAGGAGGATGGCCTTTGTTAGTCGGGCCATTAAAATTCTTGACTTGGTTCTCAATTTTCTTTTATTCATAAAAATTAGGACATACATTTTCATCCTCGAACCTCATGTTAATGATTTGTCCTTGTTAGAATATGAGAATGCTACTTTTTGGGGGGGGGGGTTCACCTTGATCTTTGCTTATAGAGAAGATAATTCAGGCAATGTTTCTGCAGCTTTCTTGTTGGGGTTGTTATTTTTCTCCTTTCAAATACCATATCTGTAACCGCCTCAAAAGATATCAGTATGTTAAGTAGGGACTCTTAGAAAGGTTTTGAGGTGCCTTGTATAGTTTTTCAAATGTAGGATGAATCCTAATATGGAGTAAGCATTGTACGGAGTATTAGTTTATGTGTACCGTGAATGAAATCTAGTTTTCTGGTTTCCCTTTACAGTGTGTTTGGATAACAATTTTATAAAAAAAGGGAGGTGAGTGAGGGAGGGAGGGAAGAGTGAGCTTGCATTTTCCTTCCAAATCTTCTCATCGTTGAAAGGATTAGGTTTATTGAAAGGGAGGGAAAATGAATACTCCAATTCTCTTCCCTTCCCTCCTCATAGGTCATATCCAAACAAGGGAAGTTGAATCCCTCCCTTTCCCTCTATATTATCTAACCAAACACATTGTAAAAGATTATATTGATTAAGGTTGATGTCTGGCTTGTATACCATATCAGATTCTGCAGCTTTCTTGCTGGGGTTGTTTTTTTTCTCCTTGTAGATACCATATCAGACTCTCCTTGAGGCAATGGGGTAATGATTAGCAAGGTTTTGAGGTGTCTTGAATCGTAATAAGCATTGTACGGAGTATTGTTGTACGTGTACTGTTGGAATGAAATCTGGTTGCCCTTTAACGTTTGTATTGATTTCTTAGAAAAAGAAATTAAGGTTGATGTCTAGCCTGTATACTGTGTTATATTGTCTTGATAGATGTCTGACTTTTCGAGGTGGGATTTTCAGCAATCAAGCTGCAAAATGTTTCTGTTGCGTTGCTTCCAAGTTTTGGACAACGCTTAGTGGCTCACGGACCCGTAATTGCTCAAAAGAGAGGCACAGTGGTTGCTATGGTGTCAGCTGCAGCAGAGGAAACGGCTGGAGAAGATGGAGATCAGTCAAAGGTTGAAGAAGCTAACATCTCAGTTCAGAACCTTCCACTGGAATCAAAGTTGCAGCTGAAGCTTGAACAGAAGATAAAGATGAAAATGGCAAAAAAGATCAGACTCCGAAGGAACAGGCTTATGCGCAAAAGAAAGCTGAGGAAGAGAGGGGCTTGGCCACCTTCTAAGATGAAGAAGCTCAAGAATGTATAAGAGAAGCAACAGCCAGGTTATTTTTTAGTATCATCTTTTGTAGCTCGTTTTGAAGGAGCAATTCAACTTGTTTTTACGCTCTGATTACTTGAATGAGATTTACTTTTTATGTATTTTTGTTGTAGAAGAGAAACCTTGTCCTGTAGGTGCCAAAGTTGATGAGAAACATAGAAACATAGTATGATCATTTTGTACTTGTTTTTTCTGTTTGTGAATCTATCAAGAGCAGTGTAAATCTTTTTCTCTCGACTTGGTCTTAAATTTCTTCCCTTGGACACTCCCAACTTTTAGCCTTTTTCTTGTGCATGAATAAACATAGTATGGTCATTATGTACTTGTTTTTCTGTTTGTAAATCCTTTTTTCCCGCCTTGCCCTTAAATTTCTCCCCTTCGATACTCCACTTTTAGCCTTTTTCTTGTGCATGAATAGAGCCATAGAAGTTACAAAGCTACCATACATTGGAAGTTATAAAGTTGTGGTTTTTTCTTGTCCAAGGCAAAA

mRNA sequence

AGTTACATTGATTTAATTAATAACATGGGTCACCGCAACTTTGAGGTCAATACTAAATGGAGTTTACCATATCTTCTCCTTAAAATAAGAATAATGTGATCCCCTAAAAAAATACTGAGTATGTGAAAACGCAAATTAAAGACCCGCCCTCGCTCTTACAAAAGCTTATCCAAAAGCCACCCTCGAATTCTACTGCGTTCAGCAGAGAGATGGCACTCCTTTCTCCTCTCCTTTCTCTCTCCTCTGTCCCTCCTATCACTTCCATTGCCGTTTCTTCTTCTTCCTTCCCAATCAAGCTGCAAAATGTTTCTGTTGCGTTGCTTCCAAGTTTTGGACAACGCTTAGTGGCTCACGGACCCGTAATTGCTCAAAAGAGAGGCACAGTGGTTGCTATGGTGTCAGCTGCAGCAGAGGAAACGGCTGGAGAAGATGGAGATCAGTCAAAGGTTGAAGAAGCTAACATCTCAGTTCAGAACCTTCCACTGGAATCAAAGTTGCAGCTGAAGCTTGAACAGAAGATAAAGATGAAAATGGCAAAAAAGATCAGACTCCGAAGGAACAGGCTTATGCGCAAAAGAAAGCTGAGGAAGAGAGGGGCTTGGCCACCTTCTAAGATGAAGAAGCTCAAGAATGTATAAGAGAAGCAACAGCCAGGTTATTTTTTAGTATCATCTTTTGTAGCTCGTTTTGAAGGAGCAATTCAACTTGTTTTTACGCTCTGATTACTTGAATGAGATTTACTTTTTATGTATTTTTGTTGTAGAAGAGAAACCTTGTCCTGTAGGTGCCAAAGTTGATGAGAAACATAGAAACATAGTATGATCATTTTGTACTTGTTTTTTCTGTTTGTGAATCTATCAAGAGCAGTGTAAATCTTTTTCTCTCGACTTGGTCTTAAATTTCTTCCCTTGGACACTCCCAACTTTTAGCCTTTTTCTTGTGCATGAATAAACATAGTATGGTCATTATGTACTTGTTTTTCTGTTTGTAAATCCTTTTTTCCCGCCTTGCCCTTAAATTTCTCCCCTTCGATACTCCACTTTTAGCCTTTTTCTTGTGCATGAATAGAGCCATAGAAGTTACAAAGCTACCATACATTGGAAGTTATAAAGTTGTGGTTTTTTCTTGTCCAAGGCAAAA

Coding sequence (CDS)

ATGGCACTCCTTTCTCCTCTCCTTTCTCTCTCCTCTGTCCCTCCTATCACTTCCATTGCCGTTTCTTCTTCTTCCTTCCCAATCAAGCTGCAAAATGTTTCTGTTGCGTTGCTTCCAAGTTTTGGACAACGCTTAGTGGCTCACGGACCCGTAATTGCTCAAAAGAGAGGCACAGTGGTTGCTATGGTGTCAGCTGCAGCAGAGGAAACGGCTGGAGAAGATGGAGATCAGTCAAAGGTTGAAGAAGCTAACATCTCAGTTCAGAACCTTCCACTGGAATCAAAGTTGCAGCTGAAGCTTGAACAGAAGATAAAGATGAAAATGGCAAAAAAGATCAGACTCCGAAGGAACAGGCTTATGCGCAAAAGAAAGCTGAGGAAGAGAGGGGCTTGGCCACCTTCTAAGATGAAGAAGCTCAAGAATGTATAA

Protein sequence

MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVVAMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo19459.1Spo19459.1mRNA


Homology
[Close]
BLAST of Spo19459.1 vs. NCBI nr
Match: gi|8118451|gb|AAF72995.1|AF261940_1 (ribosomal protein 5 precursor [Spinacia oleracea])

HSP 1 Score: 245.7 bits (626), Expect = 4.700e-62
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

		  

Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV
Sbjct: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM
Sbjct: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
           RKRKLRKRGAWPPSKMKKLKNV
Sbjct: 121 RKRKLRKRGAWPPSKMKKLKNV 142
[Close]
BLAST of Spo19459.1 vs. NCBI nr
Match: gi|902240533|gb|KNA26006.1| (hypothetical protein SOVF_000530 [Spinacia oleracea])

HSP 1 Score: 237.3 bits (604), Expect = 1.700e-59
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1 

		  

Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLP+ GQRL+ HGPVIAQKRGTVV
Sbjct: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPTLGQRLMTHGPVIAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AMVSAAA+ETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQK+KMKMAKKIRLRRNRLM
Sbjct: 61  AMVSAAADETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKMKMKMAKKIRLRRNRLM 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
           RKRKLRKRGAWPPSKMKKLKNV
Sbjct: 121 RKRKLRKRGAWPPSKMKKLKNV 142
[Close]
BLAST of Spo19459.1 vs. NCBI nr
Match: gi|132961|sp|P27684.1|PSRP5_SPIOL (RecName: Full=50S ribosomal protein 5 alpha, chloroplastic; AltName: Full=50S ribosomal protein L40; AltName: Full=CL40; AltName: Full=Plastid-specific 50S ribosomal protein 5 alpha; Short=PSRP-5; Contains: RecName: Full=50S ribosomal protein 5 beta, chloroplastic; Contains: RecName: Full=50S ribosomal protein 5 gamma, chloroplastic; Flags: Precursor [Spinacia oleracea])

HSP 1 Score: 232.3 bits (591), Expect = 5.400e-58
Identity = 136/142 (95.77%), Postives = 136/142 (95.77%), Query Frame = 1 

		  

Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV
Sbjct: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRR  L 
Sbjct: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRTGLC 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
            K  LRKRGAWPPSKMKKLKNV
Sbjct: 121 AKESLRKRGAWPPSKMKKLKNV 142
[Close]
BLAST of Spo19459.1 vs. NCBI nr
Match: gi|731324870|ref|XP_010673204.1| (PREDICTED: 50S ribosomal protein 5 alpha, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 177.9 bits (450), Expect = 1.200e-41
Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 1 

		  

Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLS  PPITSIA+SSS FPI+L++VSV LLP+ G  L AH P++AQKRGTVV
Sbjct: 1   MALLSPLLSLSPAPPITSIALSSS-FPIRLRHVSVTLLPTVGHSLQAHAPIVAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AM SAA EE AGE GDQS+ +E NI VQ+LPLESK+QL LEQK+KMK+AKKIRLRRNRLM
Sbjct: 61  AMASAA-EEPAGEAGDQSESKE-NIPVQSLPLESKVQLNLEQKLKMKIAKKIRLRRNRLM 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
           RKRK+RK+G WPPSKMKKLKNV
Sbjct: 121 RKRKMRKKGRWPPSKMKKLKNV 139
[Close]
BLAST of Spo19459.1 vs. NCBI nr
Match: gi|697105791|ref|XP_009606723.1| (PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Nicotiana tomentosiformis])

HSP 1 Score: 98.2 bits (243), Expect = 1.200e-17
Identity = 71/141 (50.35%), Postives = 94/141 (66.67%), Query Frame = 1 

		  

Query: 7   LLSLSSVP--PITSIAVSSSSFPI-KLQNVSVALLPSFGQRLVAHGPVIAQKRGTVVAMV 66
           LL  ++ P  P++S + S+S+FP  +L N  + L P          P+I  KRG ++A  
Sbjct: 3   LLIFNTAPSVPLSSHSASTSAFPSSRLCNSHITLKPKSYANYHIQAPLIFNKRGALIAK- 62

Query: 67  SAAAEETAGEDGDQSKVE--EANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMR 126
           +AA  ++ G D  +   E  E ++ V+NLPLESKLQ KL+QKIKMK+AKKIRLRR RL+R
Sbjct: 63  AAADIDSVGSDNPEPAPENNEESVPVENLPLESKLQQKLDQKIKMKLAKKIRLRRKRLVR 122

Query: 127 KRKLRKRGAWPPSKMKKLKNV 143
           KR LRK+G WPPSKMKK KNV
Sbjct: 123 KRHLRKKGRWPPSKMKKNKNV 142
[Close]
BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2M7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_000530 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.200e-59
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1 

		  

Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLP+ GQRL+ HGPVIAQKRGTVV
Sbjct: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPTLGQRLMTHGPVIAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AMVSAAA+ETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQK+KMKMAKKIRLRRNRLM
Sbjct: 61  AMVSAAADETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKMKMKMAKKIRLRRNRLM 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
           RKRKLRKRGAWPPSKMKKLKNV
Sbjct: 121 RKRKLRKRGAWPPSKMKKLKNV 142
[Close]
BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CMB5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g064090 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 8.400e-42
Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 1 

		  

Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLS  PPITSIA+SSS FPI+L++VSV LLP+ G  L AH P++AQKRGTVV
Sbjct: 1   MALLSPLLSLSPAPPITSIALSSS-FPIRLRHVSVTLLPTVGHSLQAHAPIVAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AM SAA EE AGE GDQS+ +E NI VQ+LPLESK+QL LEQK+KMK+AKKIRLRRNRLM
Sbjct: 61  AMASAA-EEPAGEAGDQSESKE-NIPVQSLPLESKVQLNLEQKLKMKIAKKIRLRRNRLM 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
           RKRK+RK+G WPPSKMKKLKNV
Sbjct: 121 RKRKMRKKGRWPPSKMKKLKNV 139
[Close]
BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Match: V4SSM9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013047mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.500e-17
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = 1 

		  

Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPI-KLQNVSVALLPSFGQRLVAHGPVIAQKRGTV 60
           MALL     L S+PP +S A++ ++ P+ +L   ++   P     + +  P++A KRG V
Sbjct: 1   MALLVSYNPLMSLPPSSSSALAVAACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAV 60

Query: 61  VAMVSAAAEETAGEDGDQSKVEEAN--ISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRN 120
           +   S+  + TA  DG +   +     + V  LPLESK Q +LEQK++MK+AKKIRLRR 
Sbjct: 61  IVKASSDIDGTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRK 120

Query: 121 RLMRKRKLRKRGAWPPSKMKKLKNV 143
           RL+RKR++RK+G WPPSKMKKLKNV
Sbjct: 121 RLVRKRRMRKKGRWPPSKMKKLKNV 145
[Close]
BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Match: A0A067EU38_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032202mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.500e-17
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = 1 

		  

Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPI-KLQNVSVALLPSFGQRLVAHGPVIAQKRGTV 60
           MALL     L S+PP +S A++ ++ P+ +L   ++   P     + +  P++A KRG V
Sbjct: 1   MALLVSYNPLMSLPPSSSSALAVAACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAV 60

Query: 61  VAMVSAAAEETAGEDGDQSKVEEAN--ISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRN 120
           +   S+  + TA  DG +   +     + V  LPLESK Q +LEQK++MK+AKKIRLRR 
Sbjct: 61  IVKASSDIDGTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRK 120

Query: 121 RLMRKRKLRKRGAWPPSKMKKLKNV 143
           RL+RKR++RK+G WPPSKMKKLKNV
Sbjct: 121 RLVRKRRMRKKGRWPPSKMKKLKNV 145
[Close]
BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Match: M0U133_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.200e-17
Identity = 72/149 (48.32%), Postives = 96/149 (64.43%), Query Frame = 1 

		  

Query: 3   LLSPLLSL----SSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGT 62
           LL PLL      SS PP   + VS+    ++LQ   +    SF    V+     A++R T
Sbjct: 29  LLPPLLYFAPPSSSSPPTLYLPVSAR-LSLRLQRNLILQPRSFDGLTVSLPRAFAERRLT 88

Query: 63  VVAMVSAAAEETAGEDGDQSKVE-----EANISVQNLPLESKLQLKLEQKIKMKMAKKIR 122
           +V     A+ ET G +G +++       E  +SV+NLPLESK+QLKLEQK++MK+AKKIR
Sbjct: 89  IVH----ASSETDGNEGSEAEASPPEASETAMSVENLPLESKMQLKLEQKLRMKLAKKIR 148

Query: 123 LRRNRLMRKRKLRKRGAWPPSKMKKLKNV 143
           LRR RL+RKR++RK+G WPPSKMKKLKNV
Sbjct: 149 LRRKRLLRKRRMRKKGRWPPSKMKKLKNV 172
[Close]
BLAST of Spo19459.1 vs. ExPASy Swiss-Prot
Match: PSRP5_SPIOL (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.400e-60
Identity = 136/142 (95.77%), Postives = 136/142 (95.77%), Query Frame = 1 

		  

Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV
Sbjct: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRR  L 
Sbjct: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRTGLC 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
            K  LRKRGAWPPSKMKKLKNV
Sbjct: 121 AKESLRKRGAWPPSKMKKLKNV 142
[Close]
BLAST of Spo19459.1 vs. ExPASy Swiss-Prot
Match: PSRP5_PEA (50S ribosomal protein 5, chloroplastic OS=Pisum sativum GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.500e-12
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = 1 

		  

Query: 15  PITSIAVSSSSFPIKLQN----VSVALLPSFGQRLVAHGPVIAQKRGTVVAMVSAAAEET 74
           P+TS   SSS FP    N    V + L  +  +      P++ + R   + + SAAA   
Sbjct: 13  PVTS---SSSLFPHPTANPISRVRIGLPTNCLKGFRILTPIVQKPRKNSIFIASAAAGAD 72

Query: 75  A----GEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMRKRKLR 134
           +    G +  +SK E   +SV  LPLESKL+ + E+ +KMK+AKKIRL+R RL++KR+LR
Sbjct: 73  SNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRLKRKRLVQKRRLR 132

Query: 135 KRGAWPPSKMKKLKNV 143
           K+G WPPSKMKKL+ V
Sbjct: 133 KKGNWPPSKMKKLEGV 145
[Close]
BLAST of Spo19459.1 vs. ExPASy Swiss-Prot
Match: PSRP5_ARATH (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.200e-11
Identity = 60/146 (41.10%), Postives = 90/146 (61.64%), Query Frame = 1 

		  

Query: 7   LLSLSSVPPITSIAVSSSSFPIKLQNVS---VALLPSFGQ---RLVAHGPVIAQKRGTVV 66
           LL  +S+P ++S++ SSSS  ++  + +   ++L P+  +   R+      +    G +V
Sbjct: 3   LLCFNSLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESKNRVSLSAYSLNSSHGRIV 62

Query: 67  AMVSAAAEETAG-EDGDQSKVEEANISVQNLPLESKL---QLKLEQKIKMKMAKKIRLRR 126
              +A+  + A  E  ++ K   A + V  LPLESK    +L LE ++KMK+AKKIRLRR
Sbjct: 63  VKAAASGVDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRR 122

Query: 127 NRLMRKRKLRKRGAWPPSKMKKLKNV 143
            RL+RKRK+RK+G WPPSKMKK KNV
Sbjct: 123 KRLVRKRKMRKKGRWPPSKMKKNKNV 148
[Close]
BLAST of Spo19459.1 vs. TAIR (Arabidopsis)
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5)

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-12
Identity = 60/146 (41.10%), Postives = 90/146 (61.64%), Query Frame = 1 

		  

Query: 7   LLSLSSVPPITSIAVSSSSFPIKLQNVS---VALLPSFGQ---RLVAHGPVIAQKRGTVV 66
           LL  +S+P ++S++ SSSS  ++  + +   ++L P+  +   R+      +    G +V
Sbjct: 3   LLCFNSLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESKNRVSLSAYSLNSSHGRIV 62

Query: 67  AMVSAAAEETAG-EDGDQSKVEEANISVQNLPLESKL---QLKLEQKIKMKMAKKIRLRR 126
              +A+  + A  E  ++ K   A + V  LPLESK    +L LE ++KMK+AKKIRLRR
Sbjct: 63  VKAAASGVDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRR 122

Query: 127 NRLMRKRKLRKRGAWPPSKMKKLKNV 143
            RL+RKRK+RK+G WPPSKMKK KNV
Sbjct: 123 KRLVRKRKMRKKGRWPPSKMKKNKNV 148
The following BLAST results are available for this feature:
BLAST of Spo19459.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|8118451|gb|AAF72995.1|AF261940_14.7e-62100.ribosomal protein 5 precursor ... [more]
gi|902240533|gb|KNA26006.1|1.7e-5995.7hypothetical protein SOVF_0005... [more]
gi|132961|sp|P27684.1|PSRP5_SPIOL5.4e-5895.7RecName: Full=50S ribosomal pr... [more]
gi|731324870|ref|XP_010673204.1|1.2e-4176.7PREDICTED: 50S ribosomal prote... [more]
gi|697105791|ref|XP_009606723.1|1.2e-1750.3PREDICTED: 50S ribosomal prote... [more]
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BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S2M7_SPIOL1.2e-5995.7Uncharacterized protein OS=Spi... [more]
A0A0J8CMB5_BETVU8.4e-4276.7Uncharacterized protein OS=Bet... [more]
V4SSM9_9ROSI5.5e-1745.5Uncharacterized protein OS=Cit... [more]
A0A067EU38_CITSI5.5e-1745.5Uncharacterized protein OS=Cit... [more]
M0U133_MUSAM7.2e-1748.3Uncharacterized protein OS=Mus... [more]
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BLAST of Spo19459.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSRP5_SPIOL3.4e-6095.750S ribosomal protein 5 alpha,... [more]
PSRP5_PEA1.5e-1243.350S ribosomal protein 5, chlor... [more]
PSRP5_ARATH2.2e-1141.150S ribosomal protein 5, chlor... [more]
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BLAST of Spo19459.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G56910.11.3e-1241.1plastid-specific 50S ribosomal... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRODOMPD031914coord: 16..142
score: 1.0
NoneNo IPR availablePANTHERPTHR34678FAMILY NOT NAMEDcoord: 2..142
score: 9.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0045040 protein import into mitochondrial outer membrane
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0010951 negative regulation of endopeptidase activity
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0048481 plant ovule development
biological_process GO:0006364 rRNA processing
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0006547 histidine metabolic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0006427 histidyl-tRNA aminoacylation
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006508 proteolysis
biological_process GO:0015979 photosynthesis
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006810 transport
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0009396 folic acid-containing compound biosynthetic process
biological_process GO:0010342 endosperm cellularization
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006457 protein folding
biological_process GO:0031167 rRNA methylation
biological_process GO:0006396 RNA processing
biological_process GO:0009658 chloroplast organization
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0031425 chloroplast RNA processing
biological_process GO:0045727 positive regulation of translation
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006419 alanyl-tRNA aminoacylation
biological_process GO:0006522 alanine metabolic process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0060003 copper ion export
biological_process GO:0015940 pantothenate biosynthetic process
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0000914 phragmoplast assembly
biological_process GO:0042793 plastid transcription
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0071840 cellular component organization or biogenesis
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0052889 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0008380 RNA splicing
biological_process GO:0071702 organic substance transport
biological_process GO:0033036 macromolecule localization
biological_process GO:0018874 benzoate metabolic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0006782 protoporphyrinogen IX biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009657 plastid organization
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0009157 deoxyribonucleoside monophosphate biosynthetic process
biological_process GO:0016310 phosphorylation
biological_process GO:0006574 valine catabolic process
biological_process GO:0006568 tryptophan metabolic process
biological_process GO:0006554 lysine catabolic process
biological_process GO:0046251 limonene catabolic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006635 fatty acid beta-oxidation
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0005634 nucleus
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0009508 plastid chromosome
cellular_component GO:0005829 cytosol
cellular_component GO:0009509 chromoplast
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
cellular_component GO:0005835 fatty acid synthase complex
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009536 plastid
cellular_component GO:0005777 peroxisome
cellular_component GO:0005950 anthranilate synthase complex
cellular_component GO:0016020 membrane
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0045298 tubulin complex
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0005618 cell wall
cellular_component GO:0042644 chloroplast nucleoid
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
cellular_component GO:0009295 nucleoid
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004633 phosphopantothenoylcysteine decarboxylase activity
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0016301 kinase activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0016719 carotene 7,8-desaturase activity
molecular_function GO:0004049 anthranilate synthase activity
molecular_function GO:0052886 9,9'-dicis-carotene:quinone oxidoreductase activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0052887 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0070330 aromatase activity
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0016773 phosphotransferase activity, alcohol group as acceptor
molecular_function GO:0016740 transferase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0008017 microtubule binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0004300 enoyl-CoA hydratase activity
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0051750 delta3,5-delta2,4-dienoyl-CoA isomerase activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0004853 uroporphyrinogen decarboxylase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0019136 deoxynucleoside kinase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0004821 histidine-tRNA ligase activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0000049 tRNA binding
molecular_function GO:0004813 alanine-tRNA ligase activity
molecular_function GO:0004008 copper-exporting ATPase activity
molecular_function GO:0008693 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity
molecular_function GO:0030272 5-formyltetrahydrofolate cyclo-ligase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0004314 [acyl-carrier-protein] S-malonyltransferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo273460.82Barchart | Table
Spo237670.80Barchart | Table
Spo031950.79Barchart | Table
Spo174910.79Barchart | Table
Spo233840.78Barchart | Table
Spo271630.78Barchart | Table
Spo071140.77Barchart | Table
Spo112410.75Barchart | Table
Spo169550.74Barchart | Table
Spo095360.74Barchart | Table
Spo008720.73Barchart | Table
Spo022210.73Barchart | Table
Spo037730.73Barchart | Table
Spo104730.73Barchart | Table
Spo271020.73Barchart | Table
Spo085890.73Barchart | Table
Spo153020.72Barchart | Table
Spo181030.72Barchart | Table
Spo246900.72Barchart | Table
Spo109160.72Barchart | Table
Spo223260.72Barchart | Table
Spo150150.72Barchart | Table
Spo172910.71Barchart | Table
Spo075960.71Barchart | Table
Spo092670.71Barchart | Table
Spo219800.71Barchart | Table
Spo058330.71Barchart | Table
Spo131070.71Barchart | Table
Spo104930.70Barchart | Table
Spo280980.70Barchart | Table
Spo140130.70Barchart | Table
Spo241530.70Barchart | Table
Spo098030.70Barchart | Table
Spo225920.70Barchart | Table
Spo013050.70Barchart | Table
Spo119510.70Barchart | Table
Spo222010.70Barchart | Table
Spo046820.70Barchart | Table
Spo258510.69Barchart | Table
Spo137310.69Barchart | Table
Spo056800.69Barchart | Table
Spo114460.69Barchart | Table
Spo233250.69Barchart | Table
Spo209520.69Barchart | Table
Spo272100.69Barchart | Table
Spo181110.69Barchart | Table
Spo089700.69Barchart | Table
Spo245900.69Barchart | Table
Spo200270.69Barchart | Table
Spo020680.68Barchart | Table
Spo015420.68Barchart | Table
Spo103880.68Barchart | Table
Spo246790.68Barchart | Table
Spo252440.68Barchart | Table
Spo203870.68Barchart | Table
Spo037080.68Barchart | Table
Spo005790.68Barchart | Table
Spo069490.68Barchart | Table
Spo121270.68Barchart | Table
Spo014370.68Barchart | Table
Spo129590.68Barchart | Table
Spo030180.67Barchart | Table
Spo003910.67Barchart | Table
Spo046530.67Barchart | Table
Spo057020.67Barchart | Table
Spo058530.67Barchart | Table
Spo086800.67Barchart | Table
Spo117390.67Barchart | Table
Spo127260.67Barchart | Table
Spo148330.67Barchart | Table
Spo215310.67Barchart | Table
Spo256150.67Barchart | Table
Spo260060.67Barchart | Table
Spo269110.67Barchart | Table
Spo171100.66Barchart | Table
Spo166860.66Barchart | Table
Spo272910.66Barchart | Table
Spo144840.66Barchart | Table
Spo123020.66Barchart | Table
Spo117680.66Barchart | Table
Spo225430.66Barchart | Table
Spo113460.66Barchart | Table
Spo226540.66Barchart | Table
Spo107050.66Barchart | Table
Spo079550.66Barchart | Table
Spo076770.66Barchart | Table
Spo073060.66Barchart | Table
Spo072970.66Barchart | Table
Spo248570.66Barchart | Table
Spo071870.66Barchart | Table
Spo008540.66Barchart | Table
Spo001780.66Barchart | Table
Spo033040.66Barchart | Table
Spo049080.65Barchart | Table
Spo106240.65Barchart | Table
Spo079670.65Barchart | Table
Spo194010.65Barchart | Table
Spo300340.65Barchart | Table
Spo173670.65Barchart | Table
Spo001550.65Barchart | Table
Spo019700.65Barchart | Table
Spo178870.65Barchart | Table
Spo192180.65Barchart | Table