Spo19293 (gene)

Overview
NameSpo19293
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDUF1677 family protein
Locationchr3 : 27158569 .. 27158886 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTAGAAATAGTAAAATGCGAGTGTTGTGGATTGAAAGAAGAATGCACAGTAGAATACATAAATGCAATAAAAGAAAACTACAATGGAAAATGGCTATGTGGGTTATGCTCAGAAGCAGTGCGAGATGAAGTTAATAGGAATGGTGTTGAAGACGCTGTGAGAGCGCACATGTCTTTCTGCAGCAACTATAATTCCAGCCCGGCTTCGAGGGTCGCTGATGGTATGCGCCAGATGTTAAGAAGAAGGTCTGGAGAGTTGTCTCATTCTACTAAAAAATATGGAAGATCATCTAGTGCTCCTCAAGTCCTTTGA

mRNA sequence

ATGGAAGTAGAAATAGTAAAATGCGAGTGTTGTGGATTGAAAGAAGAATGCACAGTAGAATACATAAATGCAATAAAAGAAAACTACAATGGAAAATGGCTATGTGGGTTATGCTCAGAAGCAGTGCGAGATGAAGTTAATAGGAATGGTGTTGAAGACGCTGTGAGAGCGCACATGTCTTTCTGCAGCAACTATAATTCCAGCCCGGCTTCGAGGGTCGCTGATGGTATGCGCCAGATGTTAAGAAGAAGGTCTGGAGAGTTGTCTCATTCTACTAAAAAATATGGAAGATCATCTAGTGCTCCTCAAGTCCTTTGA

Coding sequence (CDS)

ATGGAAGTAGAAATAGTAAAATGCGAGTGTTGTGGATTGAAAGAAGAATGCACAGTAGAATACATAAATGCAATAAAAGAAAACTACAATGGAAAATGGCTATGTGGGTTATGCTCAGAAGCAGTGCGAGATGAAGTTAATAGGAATGGTGTTGAAGACGCTGTGAGAGCGCACATGTCTTTCTGCAGCAACTATAATTCCAGCCCGGCTTCGAGGGTCGCTGATGGTATGCGCCAGATGTTAAGAAGAAGGTCTGGAGAGTTGTCTCATTCTACTAAAAAATATGGAAGATCATCTAGTGCTCCTCAAGTCCTTTGA

Protein sequence

MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMSFCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo19293.1Spo19293.1mRNA


Homology
[Close]
BLAST of Spo19293.1 vs. NCBI nr
Match: gi|902112069|gb|KNA03797.1| (hypothetical protein SOVF_205700 [Spinacia oleracea])

HSP 1 Score: 217.6 bits (553), Expect = 1.000e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS 60
           MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS
Sbjct: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS 60

Query: 61  FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL 106
           FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL
Sbjct: 61  FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL 105
[Close]
BLAST of Spo19293.1 vs. NCBI nr
Match: gi|661897363|emb|CDO99075.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 155.6 bits (392), Expect = 4.800e-35
Identity = 75/113 (66.37%), Postives = 93/113 (82.30%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNR----NGVEDAVR 60
           ME+E+VKC+CCGLKE+CT +YI+ +K N++GKWLCGLCSEAVRDEVNR    +G+++AV+
Sbjct: 1   MEIELVKCDCCGLKEDCTQDYISEVKANFDGKWLCGLCSEAVRDEVNRGKKQSGMDEAVK 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGEL-----SHSTKKYGRSSSAPQV 105
           AHM+FC  Y S+PA RVADGMRQMLRRRSG+L     S S+KKY RSSS  QV
Sbjct: 61  AHMAFCRKYKSNPAIRVADGMRQMLRRRSGDLSSSSSSSSSKKYSRSSSTSQV 113
[Close]
BLAST of Spo19293.1 vs. NCBI nr
Match: gi|747086412|ref|XP_011090706.1| (PREDICTED: uncharacterized protein LOC105171331 [Sesamum indicum])

HSP 1 Score: 154.1 bits (388), Expect = 1.400e-34
Identity = 75/111 (67.57%), Postives = 90/111 (81.08%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRN----GVEDAVR 60
           ME+E+VKCECCGLKEECT +YIN +K  ++GKWLCGLCSEAVRDEV+R     GV++AV+
Sbjct: 1   MEIELVKCECCGLKEECTQDYINGVKAKFDGKWLCGLCSEAVRDEVSRGKKQFGVDEAVK 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGELS---HSTKKYGRSSSAPQV 105
           AHMSFC  Y S+PA RVADGMRQMLRRR+G+ S    S+KKY RS+S  QV
Sbjct: 61  AHMSFCRKYKSNPAIRVADGMRQMLRRRAGDSSSSPSSSKKYSRSASTSQV 111
[Close]
BLAST of Spo19293.1 vs. NCBI nr
Match: gi|720000644|ref|XP_010256092.1| (PREDICTED: uncharacterized protein LOC104596560 [Nelumbo nucifera])

HSP 1 Score: 152.5 bits (384), Expect = 4.000e-34
Identity = 74/114 (64.91%), Postives = 92/114 (80.70%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRN----GVEDAVR 60
           ME+E+VKCECCGLKE+CT +YI+ +K N+NGKWLCGLCSEAVRDEVNR     G+E+A++
Sbjct: 1   MEIELVKCECCGLKEDCTQDYISEVKANFNGKWLCGLCSEAVRDEVNRGKKPFGMEEAMK 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGELSH------STKKYGRSSSAPQV 105
           AHMSFC  + S+PA RVADGMRQ+LRRRSG+LS       ++KKY RS+S  QV
Sbjct: 61  AHMSFCRKFKSNPAVRVADGMRQLLRRRSGDLSSPQSTTTASKKYLRSASTSQV 114
[Close]
BLAST of Spo19293.1 vs. NCBI nr
Match: gi|747051034|ref|XP_011071601.1| (PREDICTED: uncharacterized protein LOC105157009 [Sesamum indicum])

HSP 1 Score: 152.5 bits (384), Expect = 4.000e-34
Identity = 72/112 (64.29%), Postives = 93/112 (83.04%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNR-----NGVEDAV 60
           M++E+VKCECCGLKE+CT +YI+ +K N++GKWLCGLCSEAVRDEVNR     +G+E+AV
Sbjct: 1   MDIELVKCECCGLKEDCTQDYISKVKANFDGKWLCGLCSEAVRDEVNRAGKKQSGMEEAV 60

Query: 61  RAHMSFCSNYNSSPASRVADGMRQMLRRRSGELS---HSTKKYGRSSSAPQV 105
           +AHMSFC  Y S+PA +VADGMRQMLRRRSG++S    S+KKY RS+S  ++
Sbjct: 61  KAHMSFCRKYKSNPAVKVADGMRQMLRRRSGDMSTSPSSSKKYSRSASTSRM 112
[Close]
BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q936_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_205700 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.100e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS 60
           MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS
Sbjct: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS 60

Query: 61  FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL 106
           FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL
Sbjct: 61  FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL 105
[Close]
BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Match: A0A068TRZ0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026095001 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.300e-35
Identity = 75/113 (66.37%), Postives = 93/113 (82.30%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNR----NGVEDAVR 60
           ME+E+VKC+CCGLKE+CT +YI+ +K N++GKWLCGLCSEAVRDEVNR    +G+++AV+
Sbjct: 1   MEIELVKCDCCGLKEDCTQDYISEVKANFDGKWLCGLCSEAVRDEVNRGKKQSGMDEAVK 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGEL-----SHSTKKYGRSSSAPQV 105
           AHM+FC  Y S+PA RVADGMRQMLRRRSG+L     S S+KKY RSSS  QV
Sbjct: 61  AHMAFCRKYKSNPAIRVADGMRQMLRRRSGDLSSSSSSSSSKKYSRSSSTSQV 113
[Close]
BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Match: W9R930_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005427 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.400e-33
Identity = 73/113 (64.60%), Postives = 90/113 (79.65%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRN----GVEDAVR 60
           M++E+VKCECCGLKE+CT +YI  +K  ++GKWLCGLCSEAVRDEV+      G+E+AV+
Sbjct: 1   MDIELVKCECCGLKEDCTQDYITDVKAKFDGKWLCGLCSEAVRDEVSNGKKPFGMEEAVK 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGEL-----SHSTKKYGRSSSAPQV 105
           AHMSFC  + S+PA RVADGMRQMLRRRSG+L     S S+KKY RSSS+ QV
Sbjct: 61  AHMSFCRKFKSNPAVRVADGMRQMLRRRSGDLSSSPSSSSSKKYSRSSSSSQV 113
[Close]
BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Match: A0A059D154_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01080 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.100e-33
Identity = 77/128 (60.16%), Postives = 89/128 (69.53%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRN--------GVE 60
           ME+E+VKCECCGLKE+CT +YI+ +K  + GKWLCGLCSEAVRDEVNR         GVE
Sbjct: 1   MEIEMVKCECCGLKEDCTQDYISQVKSKFEGKWLCGLCSEAVRDEVNRANSNNKKPFGVE 60

Query: 61  DAVRAHMSFCSNYNSSPASRVADGMRQMLRRRSGEL----------------SHSTKKYG 105
           +AV AHMSFC  Y SSPA RVADGMRQMLRRRSG+L                S S+KKY 
Sbjct: 61  EAVGAHMSFCRKYKSSPAFRVADGMRQMLRRRSGDLSSSSSSSSSSSLSSSSSSSSKKYS 120
[Close]
BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Match: D7T702_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03650 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.100e-33
Identity = 74/110 (67.27%), Postives = 88/110 (80.00%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNG----VEDAVR 60
           ME+E+VKCECCGLKE+CT EYI+ +K  ++GKWLCGLCSEAVRDEVNR      +EDAV 
Sbjct: 1   MEIELVKCECCGLKEDCTQEYISEVKAKFDGKWLCGLCSEAVRDEVNRGKKPYCLEDAVI 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGELSHS---TKKYGRSSSAPQ 104
           AHMSFC  + S+PA RVADGMRQMLRRRSG++S S   +KKY RS+S  Q
Sbjct: 61  AHMSFCRKFKSNPAVRVADGMRQMLRRRSGDMSSSPSASKKYTRSASTSQ 110
[Close]
BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Match: AT4G14819.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 137.5 bits (345), Expect = 4.700e-33
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNG--VEDAVRAH 60
           ME+E V CECCGL E+CT  YI+ +K N+ GKWLCGLCSEAV DE +R+   VE+AV AH
Sbjct: 1   MEIESVTCECCGLMEDCTQHYISKVKANFAGKWLCGLCSEAVSDEFSRSSKTVEEAVNAH 60

Query: 61  MSFCSNYNSSPASRVADGMRQMLRRRSGELS-HSTKKYGRSSS 101
           MSFC  +N++PA  VADGMRQMLRRRSGELS   +KK+GRS++
Sbjct: 61  MSFCGKFNANPAELVADGMRQMLRRRSGELSPKMSKKFGRSNT 103
[Close]
BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Match: AT3G22540.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 133.3 bits (334), Expect = 8.900e-32
Identity = 65/106 (61.32%), Postives = 86/106 (81.13%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNR---NGVEDAVRA 60
           ME+E V+CECCGL E+CT +YI+ +K N++ KWLCGLCSEAVRDEV+R     V++AV+A
Sbjct: 1   MEIESVRCECCGLMEDCTQDYISEVKSNFDNKWLCGLCSEAVRDEVSRRKMTTVDEAVKA 60

Query: 61  HMSFCSNY-NSSPASRVADGMRQMLRRRSGELSHS--TKKYGRSSS 101
           H+SFC  +   +PA  VADGMRQMLRRRSGEL++S  +KK+GRS++
Sbjct: 61  HVSFCGKFKKDNPAVHVADGMRQMLRRRSGELTNSSTSKKFGRSNT 106
[Close]
BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Match: AT1G79770.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 99.0 bits (245), Expect = 1.900e-21
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1 

		  

Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAV---RDEVNRNGVEDAVRA 60
           +EVE  KCECCG++EECT+EYI  ++E + GKW+CGLCSEAV   RD+    G+E A++ 
Sbjct: 50  VEVEKAKCECCGMREECTMEYIERVREKFFGKWICGLCSEAVKEERDKREEEGLEGALKE 109

Query: 61  HMSFCSNYN----SSPASRVADGMRQMLRR 84
           HMS C  +N      PA   AD MR MLRR
Sbjct: 110 HMSACLRFNKLGREYPALFQADAMRDMLRR 139
[Close]
BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Match: AT1G72510.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 87.4 bits (215), Expect = 5.600e-18
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1 

		  

Query: 2   EVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRN----GVEDAVRA 61
           E + V C+CCGL EECT  YI  ++E Y GKW+CGLCSEAV+ EV R       E+A+  
Sbjct: 33  EPDSVTCDCCGLTEECTQSYIEMVRERYMGKWICGLCSEAVKYEVMRTKRLLTTEEAMAR 92

Query: 62  HMSFCSNYNSS-----PASRVADGMRQMLRR 84
           HM+ C+ + SS     P   +   MRQ+LR+
Sbjct: 93  HMNMCNKFKSSSPPPNPTGHLISAMRQILRK 123
[Close]
BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Match: AT5G25840.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 86.7 bits (213), Expect = 9.600e-18
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1 

		  

Query: 2   EVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDE---VNRNGV------E 61
           EVE  KCECCG+ EECT EYI+ ++  ++GK +CGLC +AV  E   +N + V      E
Sbjct: 42  EVEDAKCECCGMSEECTPEYIHRVRSKFSGKLICGLCEKAVEGEMEKMNNSEVLMEKRRE 101

Query: 62  DAVRAHMSFCSNYN----SSPASRVADGMRQMLRRRSGELSHSTKK----YGRSSSAPQV 106
           +AV+ HMS CS +N    S P    A+ +++ML++RS ++  +TK       RSSS    
Sbjct: 102 EAVKVHMSACSRFNRLGRSYPVLYQAEAVKEMLKKRSKKMVGATKPEKGGLARSSSCMPA 161
The following BLAST results are available for this feature:
BLAST of Spo19293.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902112069|gb|KNA03797.1|1.0e-53100.hypothetical protein SOVF_2057... [more]
gi|661897363|emb|CDO99075.1|4.8e-3566.3unnamed protein product [Coffe... [more]
gi|747086412|ref|XP_011090706.1|1.4e-3467.5PREDICTED: uncharacterized pro... [more]
gi|720000644|ref|XP_010256092.1|4.0e-3464.9PREDICTED: uncharacterized pro... [more]
gi|747051034|ref|XP_011071601.1|4.0e-3464.2PREDICTED: uncharacterized pro... [more]
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BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q936_SPIOL7.1e-54100.Uncharacterized protein OS=Spi... [more]
A0A068TRZ0_COFCA3.3e-3566.3Uncharacterized protein OS=Cof... [more]
W9R930_9ROSA2.4e-3364.6Uncharacterized protein OS=Mor... [more]
A0A059D154_EUCGR4.1e-3360.1Uncharacterized protein OS=Euc... [more]
D7T702_VITVI4.1e-3367.2Putative uncharacterized prote... [more]
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BLAST of Spo19293.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT4G14819.14.7e-3365.0Protein of unknown function (D... [more]
AT3G22540.18.9e-3261.3Protein of unknown function (D... [more]
AT1G79770.11.9e-2153.3Protein of unknown function (D... [more]
AT1G72510.15.6e-1846.1Protein of unknown function (D... [more]
AT5G25840.19.6e-1841.3Protein of unknown function (D... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012876Protein of unknown function DUF1677, plantPFAMPF07911DUF1677coord: 3..83
score: 3.5
NoneNo IPR availablePANTHERPTHR33108FAMILY NOT NAMEDcoord: 1..101
score: 1.9
NoneNo IPR availablePANTHERPTHR33108:SF2SUBFAMILY NOT NAMEDcoord: 1..101
score: 1.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010260 animal organ senescence
biological_process GO:0006468 protein phosphorylation
biological_process GO:0030001 metal ion transport
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009408 response to heat
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo022670.70Barchart | Table
Spo015920.67Barchart | Table
Spo116300.66Barchart | Table
Spo011350.65Barchart | Table