Spo18887 (gene) | SpinachBase

Overview


Name	Spo18887
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ribosomal protein S6 family protein
Location	SpoScf_00622 : 131347 .. 139307 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTCTATGACTGTGTGCTATTACTGAAACCCCACGTGAAGCAGGAATCCTTGATGGACTTGGTTGCTAGGGTGGGGAAACACGTTTATGCTCGAAATGGTGTGCTGACGGAGATAAAGTCTTTTGGAACTGTTCATCTGGGTTATGGTATTAAGAAGCTTGATGGAAGATACTTTCAGGTAATGACGTGGACTGTCTGTTTTATTTCTATTTGTATTTCAGTCTGAAACTCTTGACTATAATTTTACGTATCAGTTTGTCAAGTGATCACATTGCCTTATGCTTTTAATCATGTTTATATTATTTATCTGTTGCTAGAATAACTGCTTACTTGTCAGCTTTCAGCTTTCAGATCACTGATTTATTCATTTTATTGTTTACTTGTTGCCGTTTTGGGGCCTGGGGCTAATATATGAATTAGTTTGGGACAGTTGCTTTTCTCTTTTGAGTAGAAAATTTCTGTCATTACTCATTGAACTGAAGGCAAAATTTTCAGGAGTGAATGTCTACATGGAAGCCATTATGGCAAGAAACATTCATGCTGTTGTCCAGTTCTTGTTGGACTATAGGATTGACCCAGAATCATTTATATGGTTAGAATATCAAGGAAGCTTAAACCTGAAGGTGAAACTGTGAAAGTATCTTTCATGAATATTGCCTTAACTTTGCATACTATTCTGTGAGCTAACTTCTCACATGAAAGGTTAAGTATATAACGGCTATATGAGGATTCTTTGACTATATTAAAGGAGGGTATTTGTTAAAGAAAGAGAATAGGAGAAGCGATTAGAATCAAACTGGGAAGGTTAATTAAAAGAGGGGTGCACTTCACAACCTTATTGTTCTCCACTGAGTTCAGATCTCCAGGAGAAAAAGGAAACAAGATTGTCACTTTGCTACTGCATAGTGACATTGTTTCTTTAATCAAAGGAAGACAAGATGTGCATTCTTGTTAGGAAAAATTCTAGGCACTTAATTTGTATTTTGTTTAACCGCTTCTATCGCTTGTTTTTTAATCATCATGAACATTTTTTTCCTCGTTTTTGAAGTTTTTCGGGGGGAGGGGAAGTGATGTGGGTAGTGGAAGTTATTCCACAGAATATTGCCATTTTAGGAATATTCCTCATGAGTTAGATCAAGTGTATTTGGATAGCTTTTCAATAATCTGGGTTTATTACCTTGAAAGATACTGAAGACAAAACCATATGCTTAGCTGATTAATTTGATATTTTGTGTTGCCATTTTTCCTATAGCTTTTTAAAAAGTGCCTTAATTTACAGCTTTCCCTGTTTGACTTTGTTGGGAAGGTCTCTTTTATTCTTTTGGTTCTTGTGCTTGAATTTAAGGATAAGGAGATTGTGAACTTGTAGGCACTCGGCAGTTGTAGGTTTCAAGTTAAGGATAAGGAAATTGTTTTTCCTCCCTTTTGAGGTAGTAAGGGGGCGTTTGGTAGGGGGTCTTCATCAAAGGGAAAGGGAATCAACTAGTATGATTCCCTTTGTTGTTGTTTGTTAAGCATGTTTTGTCATTCCCTTTACCCTTTTTTCTGATTCACTTACCCCATAAATCCTCTACATTGAAACCCCACCCCCCCAGGTATTTCGATTCCCATTCCTTCCTCACCACCCAAAATCGTTGACCACCATTGACCAACATTATAACACAACCACCACCATCTGAACCACCTTCACCGGCGACCCATCCACCTTACCCCACCCACTCACCTTCTCCCTCGCCGCACCGCCGCCTCTCCATCCACCTCACACCCACCCGATACTACCATGAAACCACCACGCAACCACCCCTCACCACGACGAAACCTCCACACAACCACCCCTCACCACCACGAAACCTCCACACAATCACCCCTCACCACCACGAAACCTCCACACAACCACCCCTCACCACCACGAAGGTTATCTGCATTTGACCCCTCCTTCACTCGTCCTACGTGGAAATGTGGGAGCCTCATTTGAGACACTGGGTAGTGATCATGGTTAAGGATTTAGGGTATATGTGTATACTGGACCTGAATGGGAAGACCTTTTGCAGTTTGTTTTCTTTGTCTCTAGAATTTACATAGGAACGTCGTTTGTTGTTGGTAGTTCATATACTTCCTTCACGAGCCATGAGTTACTGGTACTTTGGTAGGAATTGACTATTTGGTACGACAGTTCTTGATTGACAGATGAAGTTTCGGACAATACTGTGCTTGAATCCTACTTCCTCCGTTCTTATTTACATCTAAAGAATTTTTACGTCTTAAGAGACACTTAAATAAGAATCAAACTCTAAGCAATGAATATGTGACAAAGGTTTATTTTTAAACTTTCAAAGACTCAATTATAATATTTAGTACTAGTGATGAACAGATGTAATTGTTTAATTTTGTGGATAGGATGAATAGATCTCAAGTCTCGCAAGTTTAAGGATCTCTTTCTATTTGCAACCATTAACATCTACACAAGTCACAACAGGTGGTGATAAAGCTTAATTCAAGATTTCAAGCCAAAAGCTCTCAATTACATTATTCTAATCACATCTGTAGCTATTAATAGCCCTTAGGCTTATTTATAAGACCCTAAAATCTCCCGCTAGCTTTCTCATTAGGTAACATATTTATGCTAGATTCTTGCCCAAAAAAAAGCCAGAAAATTAATTATAGATCTTCTAAAAGCCAGTCAATGCATTCTATAGTTCTCGTATTTCAGATGTGACGAAGTTCACATAATGTTACCATATCTTCTCTCTTTCTTCAGCATCTCCATTAGCAAACACATTAATGTGATTCTTGATGCATAGCCAGCAATGTATAACATGCAAGTAACTGACAATTTGACTAAAGAAGAGAGAAATCTAGCAGCTCAAGAACAAACAAATGTGATAGAAACTTTGTTATCCAGGTTCAATGCTTCAATTAGCTTAATTTAACACACATGAGACACAGTTTGAAGAATTTTGATGCCCAGCAGTTCAGGATTGCAATTATGCACAGTCCAGTATTATTTTGACAAGTTCAAATGCATTTGGTCTAACGAGCATATGAAAGTCCTTTAGTTGAATGGGAAAGATGAAGCGGACTGAAATTCATTTTTAGGCCTATCAAGTGCTCAACCTACTTTGCAGCTAACCCCATTAATGACAGGTCATATTGACAGTTAGTATAGATTTATATGGATTCTTGATATGTACGTATTATCATCAGAATAAGTTCATTAAGCATATAAAGAAGTGTCTTGTAGCTCATAGATAAAATTAATTATGCTCAGATCTTTAATTAATGATTTTGCAAGATTCAAGGTTCAAGGCTCAATGAAGTAAGGCTTGATAGGCGGGTAGGTGTAATGAACTAAATAGTAAAGGTTATAATGGGTAGTGCAAGTAGTATTAGTGCTAGAAGACAAATTAGGTGGTTAGAGTGGAGAGACTATAAATAAGGGAACACTAGGTTTAGAAGGCAGGTTGAGAAATTGGTAAAGTTTAGGCTTTGGAGAGTGGTGACCTCAAGTCACTAAACCTAGAGATTGGTGGCCTCAAGTCACTACTTTTTATATCCCATTTTGTGTTCATCATCTTTCTAGCAAATTAATATAATTTCTAGTTTTCTACCAGTAATTTCTGCTTAAATTAGCCAGTTCATCTCATTTGGTATCAGAGCGGTACAGTTCTGGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATCTGGTAGGAGGGCCGGTGACTTTGCAAGTGGGTTTACTGGTGGTGGTCGGGATGGTCTCCCTGGAAAATCTGGTGGAGAATCTGACGGACTTGTGAACGGTAGAGCTTCTGTTTTGCAAGCGGTGGATCTTGGGCGAGCAGATCCGGTGGTGGACCCAGATTTTTTTTTGGCAAGAATGACGACAATGATAAATGTTTACTCACCGGTGAGAATTCCGGTGGAGCACAGCGGCAATAGCGGTGGGACTTGCAAAAACAAATTTCCAGAAAAATTGTGTGGAAGAAACCTTGTTGGATTAATAATTGGCTGGGAGGGGAAGTCACTTGTAGAAGAGGGGGCCAGTAGGCAAATTGGTAAATGGACCAAAGTATAACATGACTGACAACACTAGGGAAATCTGGCTGCTAGTGCCACTTGCATCTAAGGGAAGGGAAGAGCTACAGGTTAACCTAATTAATTTTGGTGAAGAAATGAAGCTTAGTGGGCTTAGCCATTTAAAAGCCTTATTTTCTTTTATAGAAGAAAGCCAAACAGAGGGCTTTAGGCCCAATGTCCTTTCCCAAGCTCTGAGCCTCCATTACTCCAACCCTCAATTCACAACCCAAAGCAACTTACCCAACATCAATCCTGCCCAATTTGTGAGACTCGAATTACCCACCACACAACTCAATCATTCACCCAGCCCAATTTACAACAAACCCACCCAACCTTTTATTTGTAAACCAAATCTCTTTTCAGATTTGCCCAACCCAAAAGCTTACAATCAAATATCAAAATCATCTACCCGCATAATCATTCCCACTCTCACCTTAATTTCATCACATGACAGTTTTTTACCTCCCCATGACAACTTGATCAGTTTGCTTGCAACACTCAGCAAGGAAGAGCTTGAACGGCTATGGCAACACTACTATGAAGATAACATTGACCAGCTTTATAGGGGCCGAGAATCGAGTGCCGATTATTATCCACCTTGAGGACAAGGTGGAAGTTTAGGGGGTCGGTATTGTAATGAACTAAATAGTAAAGGTTATAATGGGTAGTGCAAGTAGTATTAGTGCTAGAAGACAAATTAGGTGGTTAGAGTAGAGAGACTATAAATAAGGGAACACTAGGTTTAGAAGGCAGGTTGAGAAATTGGTAAAGTTTAGGCTTTGGAGAGTGGTGACCTCAAGTCACTAAACCTAGAGATTGGTGGCCTCAAGTCACTACTTTTTATATCCCATTTTGTGTTCATCATCTTTCTAGCAAATTAATATAATTTCTAGTTTTCTACCGGTAATTTCTGCTCAAATTAGCCAGTTCATCTCAGTAGGTCATATACTTGTGTTGCAAACTTATAGCATGGCTAGTGGATATCTCCCAAAGGCTAATTTTTTATAAATGTATTGCACTTTGAACATAGCTAGTCTAGGTTTTGTTTGAGCAGTACCCTAGCGAATCCATTCCCCTATCTTCTTAAATTTACGTCTAACTGAGAAACTTAATCAAATTGATCTGTTTGTTAACTAATTTTGTACCATTGCTTTCTTTGGCTATTCAAAACCTTAAAGTGAATCATAATGTTTGAGTTTGTACATATCCTCCATCATAAGGCCAACTAAGGTTAGACTCGTTAAATTGTTAGAGGGCCTATCACTGAAGCTCATTAGGTCAACAAAAGTTTGAGGGCTGTTTCAAACAATGCTTGCTTTGTTTGACATAATTGTAAACCAGGATTGCTACGTTCAGTATCTTGGTAGTTGATATTTGAGTTTAATAAGTAAAATAGTTGTGTTAATTTCATGGAAGAAATGTATGAAGTCAAACTAGGTTGAGGTGAATAACCCGTCGAAGGTTTTAGAAGCTAGTATGGGGGTATGTATGGCTTGGTTAGATGAAGAACAAAGGGAGAGGGGTCAAGATAAGGATATTAGGTTCCTTCATTTTCAGGTTATAGACTTCTTATCTTATCGTCATGGTAGCATAAGTCCATTTGGATACTACAGTTCTTAGACCTTTTGATTTTACTAGGTTGGCCAGTAGTCGGACCTTGCATCCACTAATAGATAGCTGGCCAGTTGTACCTTCTGATTCAACTAGAGATTGGCTTTGTGAAGCTTTTGTGAAGAGAACGAAGGCAATATCTAGGAGACTAGAACTGGTCCTATTAATGATATTAAATGTGTGATAAATAAAAGTTGGGTAAACCATGATGGACATCCCTTGTGACGTGGGAGCAATGTTTGGGATGGGGTGAGGATATGCTAAACTCAGAAACACTCTCTTCCCACTGAGGTTGAAGCCTGGTATATCTTTGGGCGAAATTTTGTTGATGTTCTAGTTCTTTGTTTGGAAGATGGATTAAGTTCAATTAGCTAGGATTTCCCTTTTTCCGTCTTTTTGGTTAAGCTGGTGGATTTTTTTTTAATGTGATTTATTTGTGTGTTGCTCTTCTTTAGCAAGTGATTTGCTTTTCCTAGTTCAAATTATATCAACCCTGCTGTTTCATCAAAATTGAGGTATTTGTCTCTGGTATGTCTCTCCCAACTGTTTTTGACTGTATTTTCATGCGCTAATTTTCTGTCCACGATTGTTATGGAGCTTGGATATGTTTTCTTTGTGAAATCACACGATGTTCAGATTTTTACTAGCTGTGCTATATCAGGGAATATACAAAGACAATGCTTAATAGTTTTGCATGTAAAATTTTGTTTCATTGTAGGGAAAACTAATGCAGATGACCATGATGGCAACACCCAATATAAACAAGGAGCTTCATTACTTGAACAAAGAAGACCGACTATTACGATGGCTCATTGTGAAACATCGAAACACAAGGTTTGGGCTTGACAGCATGGATGATGAATATTTAAGAAGTGAACTAAAGAAATTCGATAAGCGTAGCATATACGGTTCAGATGAGGATAAGGATAAGGATGAAGACAATGATGATGACGAGTATGATGAGGAGGCTGACAAGCAAGATGGTTGAGGATCATTGGTTCCTGTGTGACTTGCTGTTACTGAAGCTCGTTCTTGCGTTTTTTGGCAGAATGCATATGCAACTCTCTACTGATGTTCCTTTGCGTTTCTTGCTTTTTTTGGCAGAATGCATTTGCTTATGTTTTAAACATTTGTACCTTTTTGACATAGAGAGTATGTATAGTGTACTTCACTTGTCCTGTAATAAATCGTATACCTGAATTATCTCCTTTCCTCAAAATTTTAGGATGTTGTGGGTTCTATTAAAAACCCTTTGAACTTAATTGCCGTGAACTGTTGAAACCTTCAATTATGTGAAGCCAGATGACCTGGAAGTAGACCTGGTAAAATTGACCCGATCCGAATGATCCGATTCATTACCCGATTTTGATCCTAAATGACGACCCAAAATCAACTCGAAACCCAAAATATCCGAGTCAAAACCGAAATTCAAATTTACCCGAATCAAAATATAAACAGATTCGAAATTGATTGAACCCGAAATGATCTGACACCCGAATCTACCTGAGCCGAATTAACCTGAATTGATTTTCAACAGAAACTGAAGTACACAAATCGAAAATAACTGTAAAATTTGAATTAATCGAAACCGAG

mRNA sequence

ATGCCACTCTATGACTGTGTGCTATTACTGAAACCCCACGTGAAGCAGGAATCCTTGATGGACTTGGTTGCTAGGGTGGGGAAACACGTTTATGCTCGAAATGGTGTGCTGACGGAGATAAAGTCTTTTGGAACTGTTCATCTGGGTTATGGTATTAAGAAGCTTGATGGAAGATACTTTCAGGGAAAACTAATGCAGATGACCATGATGGCAACACCCAATATAAACAAGGAGCTTCATTACTTGAACAAAGAAGACCGACTATTACGATGGCTCATTGTGAAACATCGAAACACAAGGTTTGGGCTTGACAGCATGGATGATGAATATTTAAGAAGTGAACTAAAGAAATTCGATAAGCGTAGCATATACGGTTCAGATGAGGATAAGGATAAGGATGAAGACAATGATGATGACGAGTATGATGAGGAGGCTGACAAGCAAGATGGTTGAGGATCATTGGTTCCTGTGTGACTTGCTGTTACTGAAGCTCGTTCTTGCGTTTTTTGGCAGAATGCATATGCAACTCTCTACTGATGTTCCTTTGCGTTTCTTGCTTTTTTTGGCAGAATGCATTTGCTTATGTTTTAAACATTTGTACCTTTTTGACATAGAGAGTATGTATAGTGTACTTCACTTGTCCTGTAATAAATCGTATACCTGAATTATCTCCTTTCCTCAAAATTTTAGGATGTTGTGGGTTCTATTAAAAACCCTTTGAACTTAATTGCCGTGAACTGTTGAAACCTTCAATTATGTGAAGCCAGATGACCTGGAAGTAGACCTGGTAAAATTGACCCGATCCGAATGATCCGATTCATTACCCGATTTTGATCCTAAATGACGACCCAAAATCAACTCGAAACCCAAAATATCCGAGTCAAAACCGAAATTCAAATTTACCCGAATCAAAATATAAACAGATTCGAAATTGATTGAACCCGAAATGATCTGACACCCGAATCTACCTGAGCCGAATTAACCTGAATTGATTTTCAACAGAAACTGAAGTACACAAATCGAAAATAACTGTAAAATTTGAATTAATCGAAACCGAG

Coding sequence (CDS)

ATGCCACTCTATGACTGTGTGCTATTACTGAAACCCCACGTGAAGCAGGAATCCTTGATGGACTTGGTTGCTAGGGTGGGGAAACACGTTTATGCTCGAAATGGTGTGCTGACGGAGATAAAGTCTTTTGGAACTGTTCATCTGGGTTATGGTATTAAGAAGCTTGATGGAAGATACTTTCAGGGAAAACTAATGCAGATGACCATGATGGCAACACCCAATATAAACAAGGAGCTTCATTACTTGAACAAAGAAGACCGACTATTACGATGGCTCATTGTGAAACATCGAAACACAAGGTTTGGGCTTGACAGCATGGATGATGAATATTTAAGAAGTGAACTAAAGAAATTCGATAAGCGTAGCATATACGGTTCAGATGAGGATAAGGATAAGGATGAAGACAATGATGATGACGAGTATGATGAGGAGGCTGACAAGCAAGATGGTTGA

Protein sequence

MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYFQGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDKRSIYGSDEDKDKDEDNDDDEYDEEADKQDG

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo18887.1	Spo18887.1	mRNA

Homology

[Close]

BLAST of Spo18887.1 vs. NCBI nr
Match: gi|902183856|gb|KNA10190.1| (hypothetical protein SOVF_146720 [Spinacia oleracea])

HSP 1 Score: 294.3 bits (752), Expect = 1.200e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1


		  
Query: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60
           MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF
Sbjct: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60

Query: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120
           QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK
Sbjct: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120

Query: 121 RSIYGSDEDKDKDEDNDDDEYDEEADKQDG 151
           RSIYGSDEDKDKDEDNDDDEYDEEADKQDG
Sbjct: 121 RSIYGSDEDKDKDEDNDDDEYDEEADKQDG 150

[Close]

BLAST of Spo18887.1 vs. NCBI nr
Match: gi|902236166|gb|KNA24248.1| (hypothetical protein SOVF_017350 isoform A [Spinacia oleracea])

HSP 1 Score: 264.6 bits (675), Expect = 1.000e-67
Identity = 136/150 (90.67%), Postives = 143/150 (95.33%), Query Frame = 1


		  
Query: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60
           MPLYDCVLLLKPHVK+ESLMDLVARVGKHVYARNGVL EIK+FGTVHLGYGIKKLDGRYF
Sbjct: 1   MPLYDCVLLLKPHVKRESLMDLVARVGKHVYARNGVLAEIKTFGTVHLGYGIKKLDGRYF 60

Query: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120
           QG+LMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFD+
Sbjct: 61  QGQLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDE 120

Query: 121 RSIYGSDEDKDKDEDNDDDEYDEEADKQDG 151
           RSIY    D +KDED DDDEYD+EA+KQDG
Sbjct: 121 RSIY----DLNKDEDKDDDEYDDEAEKQDG 146

[Close]

BLAST of Spo18887.1 vs. NCBI nr
Match: gi|595808118|ref|XP_007202721.1| (hypothetical protein PRUPE_ppa012847mg [Prunus persica])

HSP 1 Score: 220.7 bits (561), Expect = 1.700e-54
Identity = 106/142 (74.65%), Postives = 128/142 (90.14%), Query Frame = 1


		  
Query: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60
           MPLYDC+LL+KPHV++E+LMDLVARV KHVY RNGVLT++KSFGTV LGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLVKPHVRKEALMDLVARVSKHVYRRNGVLTDMKSFGTVQLGYGIKKLDGRYY 60

Query: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120
           QG+LMQMTMMATPNINKELHYLNKEDRLLRWL+VKHR+T++GL+ + +E   SE+ +  +
Sbjct: 61  QGQLMQMTMMATPNINKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEEDANSEVNRLHR 120

Query: 121 RSIYGSDEDKDKDEDNDDDEYD 143
            SIY  DED+D+DED+DDDEYD
Sbjct: 121 SSIYDDDEDEDEDEDDDDDEYD 142

[Close]

BLAST of Spo18887.1 vs. NCBI nr
Match: gi|694421137|ref|XP_009338428.1| (PREDICTED: uncharacterized protein LOC103930780 [Pyrus x bretschneideri])

HSP 1 Score: 215.3 bits (547), Expect = 7.200e-53
Identity = 104/148 (70.27%), Postives = 131/148 (88.51%), Query Frame = 1


		  
Query: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60
           MPLYDC+LLLKPHV++ESLMDLVARV KHVY RNGV+T++KSFGTV LGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLLKPHVRKESLMDLVARVSKHVYRRNGVITDMKSFGTVQLGYGIKKLDGRYY 60

Query: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120
           QG+LMQMTMM+TPNINKELHYLNKEDRLLRWL+VKHR T++G + + +E  ++E  K  +
Sbjct: 61  QGQLMQMTMMSTPNINKELHYLNKEDRLLRWLLVKHRETKYGQEFLSEEDSKTEFNKLQR 120

Query: 121 RSIYGSDEDKDKDEDNDDDEYDEEADKQ 149
            SIYG DED+D+DED+DDD+ + +A+++
Sbjct: 121 SSIYGMDEDEDEDEDDDDDDEEYDAEQE 148

[Close]

BLAST of Spo18887.1 vs. NCBI nr
Match: gi|731366425|ref|XP_010695064.1| (PREDICTED: uncharacterized protein LOC104907773 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 214.9 bits (546), Expect = 9.400e-53
Identity = 109/143 (76.22%), Postives = 124/143 (86.71%), Query Frame = 1


		  
Query: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60
           MPLYDCVLL KPHV ++++ DL+ARVGKHVYARNGVLTE+KS   V LGYGIKKLDGRYF
Sbjct: 1   MPLYDCVLLFKPHVNKQAITDLIARVGKHVYARNGVLTELKSIREVQLGYGIKKLDGRYF 60

Query: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120
           QGKLMQMTMMATPNINKELHYLNKEDRLLRWL+VKHR+T++GLD  ++E  +SEL KF  
Sbjct: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLLVKHRDTKYGLDYFENEDSKSELSKFTS 120

Query: 121 RSIYGSDEDKDKDEDNDDDEYDE 144
           RSIY  D D D+ ED+DDDEYDE
Sbjct: 121 RSIY-DDADMDEVEDDDDDEYDE 142

[Close]

BLAST of Spo18887.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSH3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_146720 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.500e-77
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1


		  
Query: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60
           MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF
Sbjct: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60

Query: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120
           QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK
Sbjct: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120

Query: 121 RSIYGSDEDKDKDEDNDDDEYDEEADKQDG 151
           RSIYGSDEDKDKDEDNDDDEYDEEADKQDG
Sbjct: 121 RSIYGSDEDKDKDEDNDDDEYDEEADKQDG 150

[Close]

BLAST of Spo18887.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RXR8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_017350 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 7.200e-68
Identity = 136/150 (90.67%), Postives = 143/150 (95.33%), Query Frame = 1


		  
Query: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60
           MPLYDCVLLLKPHVK+ESLMDLVARVGKHVYARNGVL EIK+FGTVHLGYGIKKLDGRYF
Sbjct: 1   MPLYDCVLLLKPHVKRESLMDLVARVGKHVYARNGVLAEIKTFGTVHLGYGIKKLDGRYF 60

Query: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120
           QG+LMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFD+
Sbjct: 61  QGQLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDE 120

Query: 121 RSIYGSDEDKDKDEDNDDDEYDEEADKQDG 151
           RSIY    D +KDED DDDEYD+EA+KQDG
Sbjct: 121 RSIY----DLNKDEDKDDDEYDDEAEKQDG 146

[Close]

BLAST of Spo18887.1 vs. UniProtKB/TrEMBL
Match: M5WAU7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012847mg PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.200e-54
Identity = 106/142 (74.65%), Postives = 128/142 (90.14%), Query Frame = 1


		  
Query: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60
           MPLYDC+LL+KPHV++E+LMDLVARV KHVY RNGVLT++KSFGTV LGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLVKPHVRKEALMDLVARVSKHVYRRNGVLTDMKSFGTVQLGYGIKKLDGRYY 60

Query: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120
           QG+LMQMTMMATPNINKELHYLNKEDRLLRWL+VKHR+T++GL+ + +E   SE+ +  +
Sbjct: 61  QGQLMQMTMMATPNINKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEEDANSEVNRLHR 120

Query: 121 RSIYGSDEDKDKDEDNDDDEYD 143
            SIY  DED+D+DED+DDDEYD
Sbjct: 121 SSIYDDDEDEDEDEDDDDDEYD 142

[Close]

BLAST of Spo18887.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAI9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g097280 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.600e-53
Identity = 109/143 (76.22%), Postives = 124/143 (86.71%), Query Frame = 1


		  
Query: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60
           MPLYDCVLL KPHV ++++ DL+ARVGKHVYARNGVLTE+KS   V LGYGIKKLDGRYF
Sbjct: 1   MPLYDCVLLFKPHVNKQAITDLIARVGKHVYARNGVLTELKSIREVQLGYGIKKLDGRYF 60

Query: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120
           QGKLMQMTMMATPNINKELHYLNKEDRLLRWL+VKHR+T++GLD  ++E  +SEL KF  
Sbjct: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLLVKHRDTKYGLDYFENEDSKSELSKFTS 120

Query: 121 RSIYGSDEDKDKDEDNDDDEYDE 144
           RSIY  D D D+ ED+DDDEYDE
Sbjct: 121 RSIY-DDADMDEVEDDDDDEYDE 142

[Close]

BLAST of Spo18887.1 vs. UniProtKB/TrEMBL
Match: M5X450_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012769mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.900e-52
Identity = 105/145 (72.41%), Postives = 128/145 (88.28%), Query Frame = 1


		  
Query: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60
           MPLYDC+LL+KPHV++E+LMDLVARV KHVY RNGVLT +KSFGTV LGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLVKPHVRKEALMDLVARVSKHVYRRNGVLTNMKSFGTVQLGYGIKKLDGRYY 60

Query: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120
           QG+LMQMTMMATPNINKELHYLNKEDRLLRWL+VKHR+T++GL+ + ++  +SE+ +F  
Sbjct: 61  QGQLMQMTMMATPNINKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDAKSEVSRFHP 120

Query: 121 RSIYGSD---EDKDKDEDNDDDEYD 143
            SIY  D   ED+D+DED+DD+EYD
Sbjct: 121 SSIYDDDEEEEDEDEDEDSDDNEYD 145

[Close]

BLAST of Spo18887.1 vs. TAIR (Arabidopsis)
Match: AT3G18760.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.500e-43
Identity = 84/132 (63.64%), Postives = 106/132 (80.30%), Query Frame = 1


		  
Query: 1   MPLYDCVLLLKPHVKQESLMDLVARVGKHVYARNGVLTEIKSFGTVHLGYGIKKLDGRYF 60
           MPLYDC+LL KP +++E L+DLVAR+GKHVY+RNGVLTEIKSFG V LGYGI+KLDGR++
Sbjct: 1   MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query: 61  QGKLMQMTMMATPNINKELHYLNKEDRLLRWLIVKHRNTRFGLDSMDDEYLRSELKKFDK 120
           QG+LMQ+TMM TPN+NKELHYLNKED+LLRWL+VKHR+ + G    +D    +   +   
Sbjct: 61  QGQLMQITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIGQSEKEDSL--TVPNRLTS 120

Query: 121 RSIY-GSDEDKD 132
            S+Y GS  D+D
Sbjct: 121 GSLYDGSSSDED 130

The following BLAST results are available for this feature:

BLAST of Spo18887.1 vs. NCBI nr
BLAST of Spo18887.1 vs. UniProtKB/TrEMBL
BLAST of Spo18887.1 vs. ExPASy Swiss-Prot
BLAST of Spo18887.1 vs. TAIR (Arabidopsis)

BLAST of Spo18887.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902183856\|gb\|KNA10190.1\|	1.2e-76	100.	hypothetical protein SOVF_1467...	[more]
gi\|902236166\|gb\|KNA24248.1\|	1.0e-67	90.6	hypothetical protein SOVF_0173...	[more]
gi\|595808118\|ref\|XP_007202721.1\|	1.7e-54	74.6	hypothetical protein PRUPE_ppa...	[more]
gi\|694421137\|ref\|XP_009338428.1\|	7.2e-53	70.2	PREDICTED: uncharacterized pro...	[more]
gi\|731366425\|ref\|XP_010695064.1\|	9.4e-53	76.2	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo18887.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QSH3_SPIOL	8.5e-77	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RXR8_SPIOL	7.2e-68	90.6	Uncharacterized protein OS=Spi...	[more]
M5WAU7_PRUPE	1.2e-54	74.6	Uncharacterized protein OS=Pru...	[more]
A0A0J8BAI9_BETVU	6.6e-53	76.2	Uncharacterized protein OS=Bet...	[more]
M5X450_PRUPE	1.9e-52	72.4	Uncharacterized protein OS=Pru...	[more]

BLAST of Spo18887.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo18887.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G18760.1	1.5e-43	63.6	Translation elongation factor...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 4..95 score: 7.0
IPR000529	Ribosomal protein S6	unknown	SSF54995	Ribosomal protein S6	coord: 1..99 score: 4.06
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 1..98 score: 1.5
None	No IPR available	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 1..143 score: 5.3
None	No IPR available	PANTHER	PTHR21011:SF5	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MVE11	coord: 1..143 score: 5.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0015031	protein transport
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0030154	cell differentiation
biological_process	GO:0006412	translation
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0009642	response to light intensity
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0042646	plastid nucleoid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo02826	0.74	Barchart \| Table
Spo26489	0.72	Barchart \| Table
Spo17056	0.72	Barchart \| Table
Spo18617	0.71	Barchart \| Table
Spo19253	0.68	Barchart \| Table
Spo10623	0.67	Barchart \| Table
Spo04709	0.67	Barchart \| Table
Spo03139	0.66	Barchart \| Table
Spo18184	0.66	Barchart \| Table
Spo19090	0.66	Barchart \| Table
Spo12867	0.66	Barchart \| Table
Spo11246	0.65	Barchart \| Table
Spo11163	0.65	Barchart \| Table