Spo18618 (gene)

Overview
NameSpo18618
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_05167 : 21 .. 5636 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCAGTAATTTTTCTGGAGCAGGTCTTAGTTCTGGAACATACCATGATTGTTAGTTGACCTTGGGATCCTAATGGAAGTTTGGATGAGATAAACTGCAGTCCCNCCCCCCCCCCCTCTCCCCGTGTATCCATGATACGATTGTTATCTTTTGTTACCTTTCTTTCTGTGAGTGCCTTTGTCTTTGATCCCGAGGTGGTTTGTATATGTTTGTACTATACTTGATATGAGCTTTCTCAAAATACTTCAACATGTATACTATTTTTGCTGATTAGTAAATTTATTCGACTATGACAAGGTTATGTGGTTGCTCAAGGAAGACCAATGAGAGAGGATCATGGCGATCGCCTTCCTTGCTGTGGTATTGGTTGTGGCTGGTTCTTGTAATGTCTCGCTCCCTTTCCCTTTGTTTCCCTCTGAGTTCATCCTTTGATTCGTGTTCGCTTCACTAAATAAGAATTAACTCACTTGAATACACATTAATGAGAGCTTCTAGGTGGTTGAATGGTGAAATAGAGAACAGAATATTTATGTATGAACTAATGGCCCATGAATGAAATCAATTGTTGTGTTAGTAATATAAAATCAGTCCACTAAGTGCCTGATTGGTCAATTTTCTAAAATAAGTGCTCAGTTGGTTGAATAGTCTTTGTAACAAGAAAAGAGAACATCAACAACCGCCTACTCAGTCACTAAGCTGAATTTTGGTATTTTCCTTATCCATGGGTCATGTCTCATAACATACATCCTCTCTCCATTCTTTAACATTCTTGTAACTTATTGTAGACTATTGTTTCTAGGAAAATGTGAAAATGGGGAATGGGGTGTAAGAAAAAGATAGATAAAGTAAGAGGGGACGGGTGTATAAAGAAGGTGGAAAGGTCTAAATATTATAGGGAATAGGGGTAACCGGGTAAGATGGTAAAATGTAAACTGCAAAAAGTAGAATAAAATAGGATTAGTACATTATTAAACACCCCAAGACGGGGAAGTAAATAGAACATTAAAGAACGGAGATAGAATTTGCTAAGCTTTGTCCAATACTAAAACGGAAGATGAAATAGGGAAGGATTTAAGAGAGCCTAAAACTAGTGCCCCCATATCACACCTTCCTGATCATTCACATAATAACATAAAGTGTTTTAATTTCTCCAATTGCAAAAAATAGGTCTCGGTTTCAATGGTGCTTATTAATTGTATTCTTTTGTTTGAAGGTTCATAATCGGGTTCTTCCTTGGTGGTATCCCTTGGTATATCGGGGCATTTTATCTGGTTTGTTGCAGAACTGATGTCGAACAAAGAGAGAAGCCAGGATATATTGCCTGTACAGTTGGTGTAAGTTTTGTCTCTCTTGCCTTGCCTCTTAATCCGTTTACTCAGTTCCATCATACATCTACTATATCTTCATCTTTTCAAATTTTTAGTAGATGATGAGTAATTTTGATTCCGTGAGAAGAAAGTATTTCCTTGTTGCTGCTTGTGCCTTGTGGAGTGACGATTCTTCTGAACATATGATCATTATACAGCGCATTGTCGGTTTTTGGTTAAGAAGTAGAGGAAATAGAAAATAGGAGTTGTTCATGTTGGAGAGAAATGTGCGGCTGAAAGTCCTTTCCCTACTATGGAAGTTTGATGATCTACTTGTGCTATGAGCTTTCATTAAAGTATTGGGAGAGCAAGTTTCATGAAAAGCCTATAGCTGTTTTGTGTTTAAACCAAAACTCTAAAGTGTTTAGGATTAGAATATTTGACCAGAACTCTATTTTGAGAACAGGGCTTTATTCTTAGGACGTGCTTGGAATAAGGGTTCAGTTAAACGGCTACATCCATTTGTCCATTGTGGAAACTACCGTGGATCTTAAGCTGTTATTTATAATAGTTAAAGAGGGTAGAAATCATCCCATGTTGCTGGTTAATAGGTTCTCCTACCGTCTCCTATAGTCGTAATTTACTCAGGTCATGAGGGTAAAGTGTTCTTTCACCAAGTTAACAACCATCAATATCATGCAAAATAAGAGCACTTATACCAAAGGTAAGGAGTAGTAAGGGCGAACTTAAGTTAATCTTCAAGGTATTTTCAAGATGCAAGTACGAGAAAAACTTGACCATTCATCATCTATTTTGATTTCCACAAGCAACTGCTTTAGGGAGCGTTATATTCACCTTTAAAAAATAAGTTAAGTTCAGATAAGTTCCAATAATTTCGGATAAGTTAAGATAAGCTCCAATAAGTTTGGATAATTTCAGATAAGTTCCAATAAGTTCGGATAAATTCAGATAAGTTACAATTAGGTCTAATAAATTTCAATATTATTAATATAATAATAATAATAATTATTACTCCATATGTCCCACATTACTTGTCACACTTTCCTTTTTCTTCCGTCTCAGATTACTTGTTACACTTTTAAATTAGGAATGACCCCACAATTATTATATTGTCTCTCTCTTCTCACTAAAAAAAAGTTTGCTCCCCACTCTCTCTCATTCAATTTTAAAATACCCCACTAACTACTATCACATCTATTTTTTCAATAAAATAACAACTGATAACCAAATAATCACTTATCACCTAAAACTTTATGCAAATGTAAGTGTAACGAGTAATGTGGGACGGAGGGAGTATTGTTATTTTGATTCTTATTGTTATATCATTATTATTATTATGATATTACAATTATAATTATAAATAACAAGATACGATATTAACTCGAACCTATAAGAACCCAAACCCGACGAAAATCGACCCGTTTCATTCCGCTACCCGATTAACCGGATCAGACATGAACATGACCTGATATGATTCCCGATCTGACAACCCAATCCGACATTACCCAATCCCATTCTATATGATCCCGAACAGTAAAAACCCGAATCAATTTTTAACCGAACCCGTTTCAACCCGGACCTGTTAAAAAGCGGAATCGTTTCAACCCGAACCCGCTTAAACTTGGGCCCATTTCAACCCGTACCGTATAAATCCAAACCCGTTCAAACTCGGACCTTTTCAACCCGGACCAGTATAACCCCTGACGCGTTTCAATTATTATTATTATTTATTATTTTATTATTTTATTTGAAGTATTATTTTTATTAATATTATTATTTTATTATTAATATTTATTATTATTATTATTATTATTATTATTTATTTTTATTATTTTTATTATTATTTATTATTTCCTCCGTTTGGAAATACTCACAACGGTGGTCACTCTCACGCATACGAATGCACAATTTTGATCGTTAGTATCTTGAATTTTGTTCAAGCAAAAATTATAAAAAGTTGATATTTTGAAAATACGCATTGAGACGATTTAGACGAATCTAACAAGACCCCATATGACTATGTTTTATCTGACATAGAACTTACCAAGAATAGTCAAGTAGAATATGTGAATAGTGTAAAAAGTTCAAACGTTGCGAACTTTTCTAAACGGAGGAAGTATTATTATTTATTATTATTGTAAATTATTTTCATTATTGTTATTTATTTATAATAATAATAAGTTCCAGTCAGGTCTAATAAGGTCAAAGCAGGTTTGATCAACTCCAATAAGTTCAGATAAGTTCCGATAAATTCCAACAAGTTTAGATAAGTTAAGATTAGATAAACTTAGGTCAGATAAGTTGAATAGAACACATGCTTAGTATCTTTCTTGTGCTCTTTTTACTGTTGTACAGTGCGACTAGCACACTATTTCTATACTTCATAGGGGGAGCCATGGTTTTCCACCAATTCTGTTTACTTTTATTTCACGGTGTCATCTTTCATAAGTAACATAACCGCACTTGTTGAATTTTCATGATCCATAATTTTTATTGATTCTTTATGCAAAATGAGTTTTTTTTATTAACCTGAAAGGTCCACTCACTACTGAATCACTGGTGACTCTGTTGGCAAATGTTATACAATTATAATGGACTAGATTGTCTCATGGTAGAACTTTTTAGCTGTTAAGTAGCAGAGAACTAATTTCTTCTCAATCTGTCATCTGACGAGTTTTGAACTTTTAAGAACTTTGGTGTTTTAGCTGTTAAGTAGCATACTTCAGACAATCGGACCCCCTTAAACCCACCTCCTGGCTCCTGCCACATATAACCCCGTGGTTTATACTTTGGCAAATGAGTTTTTAATAGGATATTGTGAAAGAATATTTTAGATCTTTAATGCTTCTTTTATAGGGTTTTGTATTGTTGCTCATCAAAATATATCACAAAAGTTGTACGCTGTATCAAGTATTAAATTTAGTACAATATGTAAGGAACGAGCTTACTGCTTACCAGATAGCTTCATGCAAATACTCGCTCCGTCCCTCAATACTCGCTCCGCTTTCCTGATAAAGCCGTATCTTAATATTCACCTCGTTTCTATAAATGACATACTTTTACTATTATAATATCATTTCTCTTACTTAACTATGGATCCACATATATTCTTATTTCCTAACAAAAACATTAAAAAATTCAACTCTCACCCCACCCCCACCAACACCCCTTTAGTTGACATACTTCCCACTAACTATATTAGAAAAATCCACACTATCAACTACCACCTAATAAATTAATAAGTCAACTAAGTTACCTAAAACTTTGTGCTGGTCAAACCGTGGCGAGTAAGGGACAGAGGGAGTACTAGAGAACTGATTCCAATAAATAGCCCTGAGTATGATATGATTTTTCTCCCCCTAGTGTTCCAGTTCTATTGGCAGTTCTTACTATATTCTTGAAGGTGTACAACTTAACATGGTTTTATGGACCTTCACTAGCCGATTCCTTAGGTATCTTTACTGTCTGTGGAAACTTCTTTGATGCTTAAAGGGTGAACAATCATGAACGATGTTTTTATATATGCATTTATTTAGAGCCGCATCACGTTAGTTACGGCCTCAAATGTTTATTTTAGAACCATGTTTGTTAGCTATTATTTGATTCTTAAAATTAGGCTTGTGATGCAGTTATTGTATCCAAGAAGATGAGACCTTAAACAATTTAACATGGGTTAATTAATTAACACAATCTGGAAGCAGTCTTTACTCATAACTCACTTTGCGCTGATATTTTGTGCTGATTTTGCAGACTGTCGTGGCTATTATAGCCACTGTTTTCGGTGTGGCAAAATTTAATTACTGAGTATCCTTGCGCATGGAAAAGAAACCCGTGGGTATACATGTGCATTTGCTTGTGAGTCGTTGAGCAGTTTTTCAAGTTAAGGAGAGGTTCCAATAGTTTGTTGTACTAGTGCCTAAAGTGATTAGACATATAAATAATCTTTGTTGTGAATCTTTTTCTGTATATAAACTTGTTTACAACGATTTGTGTCAGTAGAACTAAGCATTAAGCATTTGTACGTTTGTATAAAATCTTGTGTATTTGATCACATGAATTATATCATAAAACTGGGATTCTATGTCAGCAGCCATTGTAGCTTGATACTCCATCATGTTATTCTCAAATCTGGTTACATTTACGCATTGGCGGATGGCGGATGGCGGATGTTGCTGCATCAAGCTCCAGCAGCATCTTGCTGCACAAACCCAATTGCCTGATTTCAGTTTCTCTATTTATATCAAACTACTAATGCTGTTATGCTACGTCTCAGCTCTCTCGATTTACC

mRNA sequence

AACCAGTAATTTTTCTGGAGCAGGTCTTAGTTCTGGAACATACCATGATTGTTAGTTGACCTTGGGATCCTAATGGAAGTTTGGATGAGATAAACTGCAGTCCCNCCCCCCCCCCCTCTCCCCGTGTATCCATGATACGATTGTTATCTTTTGTTACCTTTCTTTCTGTGAGTGCCTTTGTCTTTGATCCCGAGGTGGTTTGTATATGTTTGTACTATACTTGATATGAGCTTTCTCAAAATACTTCAACATGTATACTATTTTTGCTGATTAGTAAATTTATTCGACTATGACAAGGTTATGTGGTTGCTCAAGGAAGACCAATGAGAGAGGATCATGGCGATCGCCTTCCTTGCTGTGGTATTGGTTGTGGCTGGTTCTTGTTCATAATCGGGTTCTTCCTTGGTGGTATCCCTTGGTATATCGGGGCATTTTATCTGGTTTGTTGCAGAACTGATGTCGAACAAAGAGAGAAGCCAGGATATATTGCCTGTACAGTTGGTACTGTCGTGGCTATTATAGCCACTGTTTTCGGTGTGGCAAAATTTAATTACTGAGTATCCTTGCGCATGGAAAAGAAACCCGTGGGTATACATGTGCATTTGCTTGTGAGTCGTTGAGCAGTTTTTCAAGTTAAGGAGAGGTTCCAATAGTTTGTTGTACTAGTGCCTAAAGTGATTAGACATATAAATAATCTTTGTTGTGAATCTTTTTCTGTATATAAACTTGTTTACAACGATTTGTGTCAGTAGAACTAAGCATTAAGCATTTGTACGTTTGTATAAAATCTTGTGTATTTGATCACATGAATTATATCATAAAACTGGGATTCTATGTCAGCAGCCATTGTAGCTTGATACTCCATCATGTTATTCTCAAATCTGGTTACATTTACGCATTGGCGGATGGCGGATGGCGGATGTTGCTGCATCAAGCTCCAGCAGCATCTTGCTGCACAAACCCAATTGCCTGATTTCAGTTTCTCTATTTATATCAAACTACTAATGCTGTTATGCTACGTCTCAGCTCTCTCGATTTACC

Coding sequence (CDS)

ATGAGAGAGGATCATGGCGATCGCCTTCCTTGCTGTGGTATTGGTTGTGGCTGGTTCTTGTTCATAATCGGGTTCTTCCTTGGTGGTATCCCTTGGTATATCGGGGCATTTTATCTGGTTTGTTGCAGAACTGATGTCGAACAAAGAGAGAAGCCAGGATATATTGCCTGTACAGTTGGTACTGTCGTGGCTATTATAGCCACTGTTTTCGGTGTGGCAAAATTTAATTACTGA

Protein sequence

MREDHGDRLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGTVVAIIATVFGVAKFNY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo18618.1Spo18618.1mRNA


Homology
[Close]
BLAST of Spo18618.1 vs. NCBI nr
Match: gi|902188845|gb|KNA11242.1| (hypothetical protein SOVF_136910 [Spinacia oleracea])

HSP 1 Score: 172.6 bits (436), Expect = 2.800e-40
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

		  

Query: 1   MREDHGDRLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVG 60
           MREDHGDRLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVG
Sbjct: 86  MREDHGDRLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVG 145

Query: 61  TVVAIIATVFGVAKFNY 78
           TVVAIIATVFGVAKFNY
Sbjct: 146 TVVAIIATVFGVAKFNY 162
[Close]
BLAST of Spo18618.1 vs. NCBI nr
Match: gi|1021036548|gb|KZM94331.1| (hypothetical protein DCAR_017574 [Daucus carota subsp. sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.400e-20
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 1 

		  

Query: 8   RLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGTVVAIIA 67
           RLPCCGIGC WFLFIIGFFL GIPWYIGAF L+C R D   REKPGY+ACT+  V+A IA
Sbjct: 86  RLPCCGIGCAWFLFIIGFFLAGIPWYIGAFVLLCARYD--HREKPGYVACTIAAVLAAIA 145

Query: 68  TVFGV 73
            VFG+
Sbjct: 146 VVFGL 148
[Close]
BLAST of Spo18618.1 vs. NCBI nr
Match: gi|595875425|ref|XP_007212180.1| (hypothetical protein PRUPE_ppa012647mg [Prunus persica])

HSP 1 Score: 105.1 bits (261), Expect = 5.400e-20
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 

		  

Query: 2   REDHGDRLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGT 61
           R  H  RLPCCG+G GW LFIIGFFLGGIPWY+G F L+C R  V+ REKPGY+ACT+ +
Sbjct: 85  RPVHERRLPCCGMGIGWLLFIIGFFLGGIPWYVGTFILLCVR--VDYREKPGYVACTIAS 144

Query: 62  VVAIIATVFGVAK 75
           ++A+IA   G  K
Sbjct: 145 ILAVIAVTLGATK 155
[Close]
BLAST of Spo18618.1 vs. NCBI nr
Match: gi|590611451|ref|XP_007022107.1| (60S ribosomal protein L18a, plant, putative [Theobroma cacao])

HSP 1 Score: 105.1 bits (261), Expect = 5.400e-20
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 1 

		  

Query: 8   RLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGTVVAIIA 67
           RLPCCGIG GWFLFIIGFFLG IPWYIG F LVC R  ++ REKPGYIACT+  ++A IA
Sbjct: 94  RLPCCGIGIGWFLFIIGFFLGAIPWYIGLFILVCAR--IDYREKPGYIACTIAAILATIA 153

Query: 68  TVFGVAK 75
            V GV K
Sbjct: 154 IVLGVTK 158
[Close]
BLAST of Spo18618.1 vs. NCBI nr
Match: gi|297853132|ref|XP_002894447.1| (hypothetical protein ARALYDRAFT_474484 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 104.8 bits (260), Expect = 7.100e-20
Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = 1 

		  

Query: 7   DRLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGTVVAII 66
           +RLPCCG+G GWFLFIIGF LG IPWYIG F LVC R D   REKPGYIACT+  VVA I
Sbjct: 82  NRLPCCGLGLGWFLFIIGFLLGAIPWYIGVFILVCARIDT--REKPGYIACTIAAVVATI 141

Query: 67  ATVFGV 73
           A VFGV
Sbjct: 142 AIVFGV 145
[Close]
BLAST of Spo18618.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVD6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136910 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.900e-40
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

		  

Query: 1   MREDHGDRLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVG 60
           MREDHGDRLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVG
Sbjct: 86  MREDHGDRLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVG 145

Query: 61  TVVAIIATVFGVAKFNY 78
           TVVAIIATVFGVAKFNY
Sbjct: 146 TVVAIIATVFGVAKFNY 162
[Close]
BLAST of Spo18618.1 vs. UniProtKB/TrEMBL
Match: A0A164YCZ9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_017574 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.900e-21
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 1 

		  

Query: 8   RLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGTVVAIIA 67
           RLPCCGIGC WFLFIIGFFL GIPWYIGAF L+C R D   REKPGY+ACT+  V+A IA
Sbjct: 86  RLPCCGIGCAWFLFIIGFFLAGIPWYIGAFVLLCARYD--HREKPGYVACTIAAVLAAIA 145

Query: 68  TVFGV 73
            VFG+
Sbjct: 146 VVFGL 148
[Close]
BLAST of Spo18618.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HD55_SOLCH (Putative 60S ribosomal protein L18a-like protein-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.200e-20
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1 

		  

Query: 8   RLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGTVVAIIA 67
           RLPCCG+G GWFLFIIGFFLG IPWYIGAF L+C R D   REKPG+IACT+   +A++A
Sbjct: 90  RLPCCGMGIGWFLFIIGFFLGAIPWYIGAFLLLCARLD--YREKPGFIACTLAATLALVA 149

Query: 68  TVFGVAKFNY 78
              GV K NY
Sbjct: 150 VTLGVTKVNY 157
[Close]
BLAST of Spo18618.1 vs. UniProtKB/TrEMBL
Match: A0A061FAA9_THECC (60S ribosomal protein L18a, plant, putative OS=Theobroma cacao GN=TCM_032256 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.800e-20
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 1 

		  

Query: 8   RLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGTVVAIIA 67
           RLPCCGIG GWFLFIIGFFLG IPWYIG F LVC R  ++ REKPGYIACT+  ++A IA
Sbjct: 94  RLPCCGIGIGWFLFIIGFFLGAIPWYIGLFILVCAR--IDYREKPGYIACTIAAILATIA 153

Query: 68  TVFGVAK 75
            V GV K
Sbjct: 154 IVLGVTK 158
[Close]
BLAST of Spo18618.1 vs. UniProtKB/TrEMBL
Match: M5WI28_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012647mg PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.800e-20
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 

		  

Query: 2   REDHGDRLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGT 61
           R  H  RLPCCG+G GW LFIIGFFLGGIPWY+G F L+C R  V+ REKPGY+ACT+ +
Sbjct: 85  RPVHERRLPCCGMGIGWLLFIIGFFLGGIPWYVGTFILLCVR--VDYREKPGYVACTIAS 144

Query: 62  VVAIIATVFGVAK 75
           ++A+IA   G  K
Sbjct: 145 ILAVIAVTLGATK 155
[Close]
BLAST of Spo18618.1 vs. ExPASy Swiss-Prot
Match: R18AL_ARATH (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 9.500e-17
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 1 

		  

Query: 9   LPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGTVVAIIAT 68
           LPCCG+G GWFLFI+GF  GGIPWY+GAF ++   T V+ REK GY+AC++ +VV +IA 
Sbjct: 90  LPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLV--TSVDHREKAGYVACSIASVVYLIAV 149

Query: 69  VFGV 73
           + G+
Sbjct: 150 MLGM 151
[Close]
BLAST of Spo18618.1 vs. TAIR (Arabidopsis)
Match: AT1G53560.1 (Ribosomal protein L18ae family)

HSP 1 Score: 102.8 bits (255), Expect = 9.500e-23
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 1 

		  

Query: 7   DRLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGTVVAII 66
           +RLPCCG+G GWFLFIIGF LG IPWY+G F LVC R D   REKPGY+ACT+  VVA I
Sbjct: 82  NRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARID--PREKPGYVACTIAAVVATI 141

Query: 67  ATVFGV 73
             VFGV
Sbjct: 142 TIVFGV 145
[Close]
BLAST of Spo18618.1 vs. TAIR (Arabidopsis)
Match: AT1G17080.1 (Ribosomal protein L18ae family)

HSP 1 Score: 97.4 bits (241), Expect = 4.000e-21
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 

		  

Query: 8   RLPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGTVVAIIA 67
           RLPCCGIG GWFLFI+GFFLG IPWY+G F ++  R  ++ REKPGYIACT+  ++A IA
Sbjct: 84  RLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGRR-IDYREKPGYIACTIAAILATIA 143

Query: 68  TVFGVAK 75
            + GV+K
Sbjct: 144 VILGVSK 149
[Close]
BLAST of Spo18618.1 vs. TAIR (Arabidopsis)
Match: AT1G29970.2 (60S ribosomal protein L18A-1)

HSP 1 Score: 79.0 bits (193), Expect = 1.500e-15
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 

		  

Query: 9   LPCCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTV 60
           LPCCG+G GWFLFI+GF  GGIPWY+GAF ++   T V+ REK GY+AC++
Sbjct: 90  LPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLV--TSVDHREKAGYVACSI 138
[Close]
BLAST of Spo18618.1 vs. TAIR (Arabidopsis)
Match: AT3G14595.1 (Ribosomal protein L18ae family)

HSP 1 Score: 73.6 bits (179), Expect = 6.100e-14
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 1 

		  

Query: 11  CCGIGCGWFLFIIGFFLGGIPWYIGAFYLVCCRTDVEQREKPGYIACTVGTVVAIIATVF 70
           CCGIG GW LFI+GFF   +PWYIG F L+  R     RE+PGYIAC VG V A I  +F
Sbjct: 67  CCGIGIGWVLFILGFFFA-LPWYIGFFLLLFSRNP---RERPGYIACAVGAVFATIIVIF 126

Query: 71  GVAK 75
           G  +
Sbjct: 127 GTVR 126
The following BLAST results are available for this feature:
BLAST of Spo18618.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902188845|gb|KNA11242.1|2.8e-40100.hypothetical protein SOVF_1369... [more]
gi|1021036548|gb|KZM94331.1|1.4e-2073.8hypothetical protein DCAR_0175... [more]
gi|595875425|ref|XP_007212180.1|5.4e-2061.6hypothetical protein PRUPE_ppa... [more]
gi|590611451|ref|XP_007022107.1|5.4e-2071.660S ribosomal protein L18a, pl... [more]
gi|297853132|ref|XP_002894447.1|7.1e-2074.2hypothetical protein ARALYDRAF... [more]
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BLAST of Spo18618.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QVD6_SPIOL1.9e-40100.Uncharacterized protein OS=Spi... [more]
A0A164YCZ9_DAUCA9.9e-2173.8Uncharacterized protein OS=Dau... [more]
A0A0V0HD55_SOLCH2.2e-2067.1Putative 60S ribosomal protein... [more]
A0A061FAA9_THECC3.8e-2071.660S ribosomal protein L18a, pl... [more]
M5WI28_PRUPE3.8e-2061.6Uncharacterized protein OS=Pru... [more]
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BLAST of Spo18618.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
R18AL_ARATH9.5e-1757.860S ribosomal protein L18a-lik... [more]
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BLAST of Spo18618.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT1G53560.19.5e-2369.7Ribosomal protein L18ae family[more]
AT1G17080.14.0e-2162.6Ribosomal protein L18ae family[more]
AT1G29970.21.5e-1562.760S ribosomal protein L18A-1[more]
AT3G14595.16.1e-1456.2Ribosomal protein L18ae family[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR1005260S RIBOSOMAL PROTEIN L18Acoord: 7..74
score: 2.2
NoneNo IPR availablePANTHERPTHR10052:SF9SUBFAMILY NOT NAMEDcoord: 7..74
score: 2.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006096 glycolytic process
biological_process GO:0009860 pollen tube growth
biological_process GO:0071901 negative regulation of protein serine/threonine kinase activity
biological_process GO:0007050 cell cycle arrest
biological_process GO:0006952 defense response
biological_process GO:0009607 response to biotic stimulus
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0030048 actin filament-based movement
biological_process GO:0046786 viral replication complex formation and maintenance
biological_process GO:0009827 plant-type cell wall modification
biological_process GO:0048513 animal organ development
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0045176 apical protein localization
biological_process GO:0019530 taurine metabolic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0010540 basipetal auxin transport
biological_process GO:0048825 cotyledon development
biological_process GO:0010229 inflorescence development
biological_process GO:0009911 positive regulation of flower development
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006334 nucleosome assembly
biological_process GO:0009987 cellular process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006810 transport
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0048316 seed development
biological_process GO:0030259 lipid glycosylation
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0015979 photosynthesis
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0016036 cellular response to phosphate starvation
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0006508 proteolysis
biological_process GO:0006629 lipid metabolic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0019375 galactolipid biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0008152 metabolic process
biological_process GO:0030968 endoplasmic reticulum unfolded protein response
biological_process GO:0009298 GDP-mannose biosynthetic process
biological_process GO:0006000 fructose metabolic process
biological_process GO:0006525 arginine metabolic process
biological_process GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline
biological_process GO:0042908 xenobiotic transport
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0006560 proline metabolic process
biological_process GO:0010260 animal organ senescence
biological_process GO:0006013 mannose metabolic process
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009410 response to xenobiotic stimulus
biological_process GO:0006821 chloride transport
biological_process GO:0010118 stomatal movement
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0019722 calcium-mediated signaling
biological_process GO:0034220 ion transmembrane transport
biological_process GO:0044070 regulation of anion transport
biological_process GO:0019853 L-ascorbic acid biosynthetic process
biological_process GO:0006457 protein folding
biological_process GO:0007165 signal transduction
biological_process GO:0009646 response to absence of light
biological_process GO:0055085 transmembrane transport
biological_process GO:0006950 response to stress
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006816 calcium ion transport
biological_process GO:0007030 Golgi organization
biological_process GO:0009651 response to salt stress
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0007033 vacuole organization
biological_process GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process
biological_process GO:0001101 response to acid chemical
biological_process GO:0009725 response to hormone
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0010043 response to zinc ion
biological_process GO:0009744 response to sucrose
biological_process GO:0033591 response to L-ascorbic acid
biological_process GO:0046680 response to DDT
biological_process GO:0046686 response to cadmium ion
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005770 late endosome
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005622 intracellular
cellular_component GO:0000786 nucleosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009705 plant-type vacuole membrane
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0052728 capsorubin synthase activity
molecular_function GO:0052727 capsanthin synthase activity
molecular_function GO:0042578 phosphoric ester hydrolase activity
molecular_function GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
molecular_function GO:0005506 iron ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0008886 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004476 mannose-6-phosphate isomerase activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0016887 ATPase activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0031418 L-ascorbic acid binding
molecular_function GO:0004656 procollagen-proline 4-dioxygenase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0008080 N-acetyltransferase activity
molecular_function GO:0050200 plasmalogen synthase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0051507 beta-sitosterol UDP-glucosyltransferase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity
molecular_function GO:0008194 UDP-glycosyltransferase activity
molecular_function GO:0008375 acetylglucosaminyltransferase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0004351 glutamate decarboxylase activity
molecular_function GO:0005544 calcium-dependent phospholipid binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0043531 ADP binding
molecular_function GO:0005247 voltage-gated chloride channel activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo267900.77Barchart | Table
Spo171970.76Barchart | Table
Spo163450.75Barchart | Table
Spo142700.74Barchart | Table
Spo136400.74Barchart | Table
Spo173450.74Barchart | Table
Spo050670.73Barchart | Table
Spo281460.73Barchart | Table
Spo223630.73Barchart | Table
Spo148300.73Barchart | Table
Spo003140.73Barchart | Table
Spo259290.73Barchart | Table
Spo236260.73Barchart | Table
Spo229210.73Barchart | Table
Spo100860.72Barchart | Table
Spo267390.72Barchart | Table
Spo046150.72Barchart | Table
Spo230440.72Barchart | Table
Spo190690.72Barchart | Table
Spo134780.72Barchart | Table
Spo104490.72Barchart | Table
Spo080090.72Barchart | Table
Spo154470.72Barchart | Table
Spo257960.71Barchart | Table
Spo133170.71Barchart | Table
Spo121340.71Barchart | Table
Spo267030.71Barchart | Table
Spo266880.71Barchart | Table
Spo251700.71Barchart | Table
Spo044360.71Barchart | Table
Spo213500.71Barchart | Table
Spo207880.71Barchart | Table
Spo077800.71Barchart | Table
Spo196680.71Barchart | Table
Spo091800.71Barchart | Table
Spo174500.71Barchart | Table
Spo154060.71Barchart | Table
Spo126660.70Barchart | Table
Spo012760.70Barchart | Table
Spo228790.70Barchart | Table
Spo043000.70Barchart | Table
Spo024640.70Barchart | Table
Spo255820.70Barchart | Table
Spo159490.70Barchart | Table
Spo261350.70Barchart | Table
Spo014480.70Barchart | Table
Spo271980.70Barchart | Table
Spo219660.70Barchart | Table
Spo180460.70Barchart | Table
Spo149110.69Barchart | Table
Spo054960.69Barchart | Table
Spo068520.69Barchart | Table
Spo076330.69Barchart | Table
Spo087530.69Barchart | Table
Spo126880.69Barchart | Table
Spo170440.69Barchart | Table
Spo179080.69Barchart | Table
Spo198120.69Barchart | Table
Spo214940.69Barchart | Table
Spo258530.68Barchart | Table
Spo238540.68Barchart | Table
Spo119230.68Barchart | Table
Spo187020.68Barchart | Table
Spo019250.68Barchart | Table
Spo131410.68Barchart | Table
Spo123760.68Barchart | Table
Spo001990.68Barchart | Table
Spo232990.68Barchart | Table
Spo059150.68Barchart | Table
Spo029790.68Barchart | Table
Spo105710.68Barchart | Table
Spo202480.68Barchart | Table
Spo202680.68Barchart | Table
Spo093050.68Barchart | Table
Spo116300.68Barchart | Table
Spo194530.67Barchart | Table
Spo078960.67Barchart | Table
Spo247790.67Barchart | Table
Spo001350.67Barchart | Table
Spo017260.67Barchart | Table
Spo207560.67Barchart | Table
Spo102610.67Barchart | Table
Spo217910.67Barchart | Table
Spo241330.67Barchart | Table
Spo265030.67Barchart | Table
Spo054900.67Barchart | Table
Spo039070.67Barchart | Table
Spo018760.67Barchart | Table
Spo165610.67Barchart | Table
Spo146550.67Barchart | Table
Spo100310.67Barchart | Table
Spo171990.67Barchart | Table
Spo258660.67Barchart | Table
Spo179560.67Barchart | Table
Spo019520.67Barchart | Table
Spo188440.67Barchart | Table
Spo045140.66Barchart | Table
Spo135920.66Barchart | Table
Spo146670.66Barchart | Table
Spo157500.66Barchart | Table
Spo268790.66Barchart | Table
Spo083390.66Barchart | Table
Spo194310.66Barchart | Table
Spo198390.66Barchart | Table
Spo201490.66Barchart | Table
Spo203450.66Barchart | Table
Spo062400.66Barchart | Table
Spo217480.66Barchart | Table
Spo055080.66Barchart | Table
Spo234630.66Barchart | Table
Spo025540.66Barchart | Table
Spo024430.66Barchart | Table
Spo256890.66Barchart | Table
Spo258030.66Barchart | Table
Spo011740.66Barchart | Table
Spo126570.66Barchart | Table
Spo109900.65Barchart | Table
Spo089910.65Barchart | Table
Spo011600.65Barchart | Table
Spo270000.65Barchart | Table
Spo099040.65Barchart | Table
Spo168280.65Barchart | Table
Spo102340.65Barchart | Table
Spo161880.65Barchart | Table
Spo103730.65Barchart | Table
Spo012260.65Barchart | Table
Spo238520.65Barchart | Table
Spo058140.65Barchart | Table
Spo004010.65Barchart | Table
Spo249400.65Barchart | Table
Spo118540.65Barchart | Table
Spo120050.65Barchart | Table