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Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCGTTTTTTTCAAAATAAAAAAAGGCAATTTTGGCTATTTGTTTGTACCAATAGAATATTTTGTTTGTCCCCAGTACAATAAAACCAAAAACAAAATCCCAATAAACAAAATCAGATAAATCAAATTAAAAAAATAAGTAAAAGAAAAAAGAAAAACAGCAAACTTCACCAGTAGTCTTTTCATCTTCTTTGACAGTGGTATAATAAGGTTGAGAGTATGGTTTGCTTCTAAATTACTTAAACCCAGACAACCACCTGAAGAAGAACAACAACAACATCATCAATTAGTCATCACCCATTTCTTTCAATCTCCCACCAAATTCGGGACATACCCTTTTCTTCAAAGGTTTGGTCCAACTGTTCATTAGATCTTCTTTTCTCCCTTTCTCCATTTTTATTTTTGTTTTATCTGTTCTTCATTTTCATTTTCATTTTAATTTTTATTTTTTTGGGTAAAACTGCACCTTTTGGGTGCCCAATTGTATTTTACATTGAGGAGTGAAATATCTTAGCTTTGTAATTGAGTGAAGGGTTATTTTTAATTTTTTTGACTCAAAGCTGTTTATAGTTCTGGGAAATTTTGCCTTTTTGGGTTCATTTAGCAAGTATATATTGATGTTTGGGTGAAATTTGGTAAGTTTTATTTTTGGATTTTCTGTTGATTTTTTTTTTTGTTTTCCATATGATTCTCTTAAGTCTGAGTGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCTGAGTGATTATCTATAAGAGCTAAAAGAGCCTACTTTGTGTTGTCTTTTTGCAGTTTTTCAGCTAGAAATTAGTTTTAATATGATTTACTAATAAACTTTGAAGCTCAAGAAATTAGGATTAAGGGGTGTTAACCCTTTTTGGTAGTATTAATTATTTATTCTTTATAATTTTCTTTTGTGTAATTCTGTAATCTAATTAGATTTGTGGATGCACTATGCCTTAAATAGTTGGATGAGGTTGGATTACTATTGCCATAAGTGTTAAATTTGTCATAAGTGTCTGTATATTGCAAATGGGATTCCTGTAAGTATCAGTCAGTGCTTCAATCGATCATAATTAGAGCTTATTGTATACTGATGATGTATCATTCTGACTATAAATCATCATTTCTAAATTTTCAAAACTGTTAAATTTCATTTCCGATTCGCGGTACCTTTCCAAACAGATTTATCAACCATGGTTTCATGAGAATTAGCTTTGGAAGTCTCTTTTACTCTGTTTCCGTGAGACCGAGAATGTAATGGAACAGTTCTTGTTGGAATTATGATACCCTCATATGGGAAGAGTGGTTGATATTTGATATTGACTAATAACTTTTTTATATTAGTTGAGTGTTGGTGGGAGTAAGTTAGGAATCAGGACAGACTAATTAGCCATTCTGATCCACTAGATCTTGTGTGTTTTTGTCTGATTTAAAGAGATTAACTGTGTTTTGAGGTCCGGATCATGTAGTTTATCTACCGATCATGTCTTCTTATGATGAAGATGCGGAAACTTTACAATATACGGAGTACTAAATATATGCATCAAATTATAGGGAAATAAGCAGTGGTAAACCGGATTTATGATTGAACTATTGAAGCGGGAAACTTCAAGCCAGTATTTCCTTTGGGACCAAAGAAGATTTTTCTGCACTTTCAAGTGGCTTGTTATATAGTCTTTGCATCCCCCTTTTCCCATTTTTATGTGATTGCTATATGTTTTGTAGCAATCAAACTTCTGTTGTTCAACTCTTTCTGATATCTTTAGCTTTCTCTCTTGCATCAATTATATCTTCTGGATTTGATTGTACGGCCTTCAACTACAATTACTGGATCATATGGACTAATTATATTTTGAGCATTTTTTTTTTACGACATAAAGGAATTATACAATGATATTTGTGTGAACTGCTATGTCTGACTCTCGAGCTTAGATGCTGGTACAAATGCACAATGCAAGTTCGTGCATTCTAGGCTTTAGTGACTTGTTTGATTAGCTTTACGTGACAACTTTTTTTCAGGCTTGAAGATAGATTGAAGTAGGTTTGTTGATCTCATAATGGGTTCTGGAGATTGGTTCAAGACAAAGATCTTTAGGAAAAAAGCGAAGCTTGACAAATCAAAAAAGTCGAAGGTAAGCAAGCTATTCTTGTCTTACATATTTCAATGTGGGATGATGCTTATTTGCATATGGCAATTTCAAAACTCTTATTTCTGGAATATGCATATATTGAACGACATTACTCAATCGCTTTTAGTGCACAAATGAGGTAACAAATACTTTAAGATCAGTCCTTACCTTCTTTCCAACTATAATTAGCATGTGATGTACTGTGGATATTTGATGCACATACATTGCGTTTTATCTATAAATTTAAGCGTTTTTTGTTCAAAGATTTTCTATCTTTCCCATGTTCAAATGGATGTTCTATTTTCCTTATTTCATTCATACTAACAAGTCAAAACATATGTGTGAAAGTTCATTTCTTACTTCTTTTATTTTTTTATTTTTCTGTTAATTTCAACCATCAAGTTATAAGGGTTTAGCTTTCTCATGCGGTTGAAATTAGCTAGATTTGGGACTCTTGATTACTTCTTTATATTTCAGAACAAGTGCGTTGCCTCTAAACACAATGACTTGTAGCATTAAACTTTCTCTTCCAAGAAATTTCTCAAAAACTCAAGTCAATTGATAGGGTTTTGCTCACTTTGTTGAGAGCTTACAGATGTTGGAAACTTGGAATTGGTCAATATGTTGAATTTCTGAATCAAACCCGTCTTATTATTAGAAATGAAGAATTTGATAAATCTCATACAATTTATAATTTTTTAATCATGTGCTCATTTTAGTACTTCTTCATTTTGAAGGTAATGAATTTGTTGATAAAATTATTTGGTTTATATCAGCATGATGATTTTACGCATACTTCTGTAGCATGCCTCATGAAAATTGCTTGGTCGTCTGTGACAGGGATCTTCAGCTTCCGACAACCAAGGCGAGAAAAACAATGCTAATGGTGGTCGGGTTAACCGTAAAACTAATGGTGCTCTTGTGAAACTCAGTGAAGATGTTGCAGCAACGAAGATACAGACTGCTTTCAGAGCCTATGCGGTATGTCATGCAATTACTTACTGAGCCAGAAAGAATCAATCTTTCTTGGGAAGAGAGAAGGAATGAAGGCCATGTCATAACATAACTCTGAATGCATTTCTTTCTACTACTGCAGGCAAGGAAAGCTTTACGGCGTATGAAAGGGATAATAAGATTCCAGAAACTAACACAGTTCCAGTCTGTTAAGAAGCAGTCAACAAATACGTTGAATAGTCTGCATTTGTGGAGTACGATACAAACTCAAATTAGAGATCGGCGGCAGTGTATGGTAATTGAAGGCCGTCTTAAACAAAAACGGCTAGAGAACCAAATAAAACTTGAGGCCAAACTACATGATTTGGAGGTCTGTTTTTAATTCTTAATTGCTCATTGGTTAATCATATTAAGGGTCTGTTTGTTTCAACTTATTTTGACTTATTTCAGCAAATAAATTCAGATAAATTGAGATATTTAATATAAATTCAAATAAGTTCAACAAAAATAAGTTATTTTCAGATAATTTAACACACAGATAAGTTCAAATAAGTTTAGATAAAGTCAGATAAGTTAGTTTCAGTCAAATCCAATTGAACCAAACAAAGCCTTATATTAATTGTGTCTACATGGTTCTGTTCAAGTAACTTCTTGTGCACCTTTTTAAATATTCTTCAAGCCAATGGGAAATTGTTATCAGTTTAGACACTTGAGAGCAATTTCCTAATATTGAGTCATATAACTTTTATCCAGAGTGGTTCAATTGGTTATCTTTTCCTTTTTAAACAGACAGATGCTGAAATTGGTGTGCTTCTTTCACTTCTTGCATTTCATATTTTTTTGCTTGGAATGGCCGAAGAAGCATATTTTAGAAAATAACCAGCAATACATGTTGTAAAATTTACTCTTTTGCTTGTCCATTGTTGGTTAGTCCTTTAAATGAGAAAATACAGAAGTCCAGTATCAAATTAACTAACTCCACAAGTTTGAAGGTCATTGAAAGAAAAAGAAGAGAGTAAAGATGTTAAATGCCGACAGCATGCAATCAATCTGGAATGTCTTACAATAAAAAGAACAGATGCAATAATATGGGAGATGAATGATAGGATTATGTAATATAAGAACACAACTCTGAGTTTTCCAAGAGTTAAAATCTTATACTCGTTTTCAGGTGGAATGGAATGGTGGTGCTGATACAATGGAGGATATTCTGTCAAGGATACATCAAAGAGAAGAAGCAGCAGTGAAGCGGGAGCGAACCTTGGCTTATGCATTCTCTCATCAAGTATGTATTTTTTTGTCACGTTTGCCAATGCAATGTTTCAACCATTAATTATTAATGGGTAAAAATTATAAAAATTTGATATTATAAAACTCTAGGATGAGATGATTATAACAAGACCCCACATGGCTACATTTTTTCTTACGTATAAATCACAATTGATAGTCAAAGTATATTATATGAATAGTGCCAAAAGTACAATTGTGTTATCTAAAAAAGAACGGAGGAAGTATACTTTAACCCCTCTTCCCCCTTCCGGTTTTCTTTCTTTTGTGGGACAATATCTTACAATATCTTTCTGCACACATTGTAGTGGAGGGCAAACTCTAGTCAAAATCAAGGCTCCGATGCTTCTGAACTAGGGAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATTGCAGCTCGTCCATGGGAAAGCAGATTGTCTTCTGAGTCAACCGGCCCTAAGAAGGGGCAAAATAAGCTTACAAGCAAGGCACGGAAAAGTAGTAACTCTACAAGTACAAAAAAGTCATTTCCTTCTAAAACAGCAGTACTAAATGGAAAGGCACCTGGAAAACCCCGAAGAGTGTCCTTCCCTGGAGCTGAAAAAGCAACCAAACAAGAAGCAATCACCAAAGTGCAAGAAAACAAGCGTGAGTCATTGTCTTAGACGTAAAAAATCACATTGTCAAGCATTCGTGTAAAATAATCACTGGTTTTCATGCGAAGAATGACTATTTTTTTTACTCTTGCAGATTTATTCTTAATGTTATATATACTGGGGGGTGGTGTGAAAAATATGTTTTGCCAAGTGATGGCGAGTACATGTGTTTATTTTTTTTCCCCTTTTGCCTATAGCATCCATTCTGTTTGTAAATGTTGAAGAGAGATATACTATTTATGGTGTAAATACAAGATAATTTTTTGAGGGGTTTTGTCGGAACTAGTGAAAGGACATGTCTGTGTTGATTCAGTCTATAAGACTCAAGGAAAACCAGTACATTTTCTGAGCTACTTTCTTTAG GCGTTTTTTTCAAAATAAAAAAAGGCAATTTTGGCTATTTGTTTGTACCAATAGAATATTTTGTTTGTCCCCAGTACAATAAAACCAAAAACAAAATCCCAATAAACAAAATCAGATAAATCAAATTAAAAAAATAAGTAAAAGAAAAAAGAAAAACAGCAAACTTCACCAGTAGTCTTTTCATCTTCTTTGACAGTGGTATAATAAGGTTGAGAGTATGGTTTGCTTCTAAATTACTTAAACCCAGACAACCACCTGAAGAAGAACAACAACAACATCATCAATTAGTCATCACCCATTTCTTTCAATCTCCCACCAAATTCGGGACATACCCTTTTCTTCAAAGGCTTGAAGATAGATTGAAGTAGGTTTGTTGATCTCATAATGGGTTCTGGAGATTGGTTCAAGACAAAGATCTTTAGGAAAAAAGCGAAGCTTGACAAATCAAAAAAGTCGAAGGGATCTTCAGCTTCCGACAACCAAGGCGAGAAAAACAATGCTAATGGTGGTCGGGTTAACCGTAAAACTAATGGTGCTCTTGTGAAACTCAGTGAAGATGTTGCAGCAACGAAGATACAGACTGCTTTCAGAGCCTATGCGGCAAGGAAAGCTTTACGGCGTATGAAAGGGATAATAAGATTCCAGAAACTAACACAGTTCCAGTCTGTTAAGAAGCAGTCAACAAATACGTTGAATAGTCTGCATTTGTGGAGTACGATACAAACTCAAATTAGAGATCGGCGGCAGTGTATGGTAATTGAAGGCCGTCTTAAACAAAAACGGCTAGAGAACCAAATAAAACTTGAGGCCAAACTACATGATTTGGAGGTGGAATGGAATGGTGGTGCTGATACAATGGAGGATATTCTGTCAAGGATACATCAAAGAGAAGAAGCAGCAGTGAAGCGGGAGCGAACCTTGGCTTATGCATTCTCTCATCAATGGAGGGCAAACTCTAGTCAAAATCAAGGCTCCGATGCTTCTGAACTAGGGAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATTGCAGCTCGTCCATGGGAAAGCAGATTGTCTTCTGAGTCAACCGGCCCTAAGAAGGGGCAAAATAAGCTTACAAGCAAGGCACGGAAAAGTAGTAACTCTACAAGTACAAAAAAGTCATTTCCTTCTAAAACAGCAGTACTAAATGGAAAGGCACCTGGAAAACCCCGAAGAGTGTCCTTCCCTGGAGCTGAAAAAGCAACCAAACAAGAAGCAATCACCAAAGTGCAAGAAAACAAGCGTGAGTCATTGTCTTAGACGTAAAAAATCACATTGTCAAGCATTCGTGTAAAATAATCACTGGTTTTCATGCGAAGAATGACTATTTTTTTTACTCTTGCAGATTTATTCTTAATGTTATATATACTGGGGGGTGGTGTGAAAAATATGTTTTGCCAAGTGATGGCGAGTACATGTGTTTATTTTTTTTCCCCTTTTGCCTATAGCATCCATTCTGTTTGTAAATGTTGAAGAGAGATATACTATTTATGGTGTAAATACAAGATAATTTTTTGAGGGGTTTTGTCGGAACTAGTGAAAGGACATGTCTGTGTTGATTCAGTCTATAAGACTCAAGGAAAACCAGTACATTTTCTGAGCTACTTTCTTTAG ATGGGTTCTGGAGATTGGTTCAAGACAAAGATCTTTAGGAAAAAAGCGAAGCTTGACAAATCAAAAAAGTCGAAGGGATCTTCAGCTTCCGACAACCAAGGCGAGAAAAACAATGCTAATGGTGGTCGGGTTAACCGTAAAACTAATGGTGCTCTTGTGAAACTCAGTGAAGATGTTGCAGCAACGAAGATACAGACTGCTTTCAGAGCCTATGCGGCAAGGAAAGCTTTACGGCGTATGAAAGGGATAATAAGATTCCAGAAACTAACACAGTTCCAGTCTGTTAAGAAGCAGTCAACAAATACGTTGAATAGTCTGCATTTGTGGAGTACGATACAAACTCAAATTAGAGATCGGCGGCAGTGTATGGTAATTGAAGGCCGTCTTAAACAAAAACGGCTAGAGAACCAAATAAAACTTGAGGCCAAACTACATGATTTGGAGGTGGAATGGAATGGTGGTGCTGATACAATGGAGGATATTCTGTCAAGGATACATCAAAGAGAAGAAGCAGCAGTGAAGCGGGAGCGAACCTTGGCTTATGCATTCTCTCATCAATGGAGGGCAAACTCTAGTCAAAATCAAGGCTCCGATGCTTCTGAACTAGGGAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATTGCAGCTCGTCCATGGGAAAGCAGATTGTCTTCTGAGTCAACCGGCCCTAAGAAGGGGCAAAATAAGCTTACAAGCAAGGCACGGAAAAGTAGTAACTCTACAAGTACAAAAAAGTCATTTCCTTCTAAAACAGCAGTACTAAATGGAAAGGCACCTGGAAAACCCCGAAGAGTGTCCTTCCCTGGAGCTGAAAAAGCAACCAAACAAGAAGCAATCACCAAAGTGCAAGAAAACAAGCGTGAGTCATTGTCTTAG MGSGDWFKTKIFRKKAKLDKSKKSKGSSASDNQGEKNNANGGRVNRKTNGALVKLSEDVAATKIQTAFRAYAARKALRRMKGIIRFQKLTQFQSVKKQSTNTLNSLHLWSTIQTQIRDRRQCMVIEGRLKQKRLENQIKLEAKLHDLEVEWNGGADTMEDILSRIHQREEAAVKRERTLAYAFSHQWRANSSQNQGSDASELGKADWGWSWKERWIAARPWESRLSSESTGPKKGQNKLTSKARKSSNSTSTKKSFPSKTAVLNGKAPGKPRRVSFPGAEKATKQEAITKVQENKRESLS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo18343.1 vs. NCBI nr
Match: gi|902074542|gb|KNA03054.1| (hypothetical protein SOVF_212830 [Spinacia oleracea]) HSP 1 Score: 564.7 bits (1454), Expect = 9.700e-158 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1
BLAST of Spo18343.1 vs. NCBI nr
Match: gi|731350127|ref|XP_010686348.1| (PREDICTED: protein IQ-DOMAIN 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 421.0 bits (1081), Expect = 1.700e-114 Identity = 239/312 (76.60%), Postives = 261/312 (83.65%), Query Frame = 1
BLAST of Spo18343.1 vs. NCBI nr
Match: gi|802786659|ref|XP_012091725.1| (PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]) HSP 1 Score: 303.5 bits (776), Expect = 4.000e-79 Identity = 176/305 (57.70%), Postives = 216/305 (70.82%), Query Frame = 1
BLAST of Spo18343.1 vs. NCBI nr
Match: gi|1009106271|ref|XP_015873661.1| (PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Ziziphus jujuba]) HSP 1 Score: 299.3 bits (765), Expect = 7.600e-78 Identity = 177/306 (57.84%), Postives = 212/306 (69.28%), Query Frame = 1
BLAST of Spo18343.1 vs. NCBI nr
Match: gi|720074923|ref|XP_010279173.1| (PREDICTED: protein IQ-DOMAIN 1 [Nelumbo nucifera]) HSP 1 Score: 295.4 bits (755), Expect = 1.100e-76 Identity = 170/301 (56.48%), Postives = 213/301 (70.76%), Query Frame = 1
BLAST of Spo18343.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7A3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_212830 PE=4 SV=1) HSP 1 Score: 564.7 bits (1454), Expect = 6.800e-158 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1
BLAST of Spo18343.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BTV3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g182090 PE=4 SV=1) HSP 1 Score: 421.0 bits (1081), Expect = 1.200e-114 Identity = 239/312 (76.60%), Postives = 261/312 (83.65%), Query Frame = 1
BLAST of Spo18343.1 vs. UniProtKB/TrEMBL
Match: A0A067JB72_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21527 PE=4 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 2.800e-79 Identity = 176/305 (57.70%), Postives = 216/305 (70.82%), Query Frame = 1
BLAST of Spo18343.1 vs. UniProtKB/TrEMBL
Match: B9S963_RICCO (Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_1013270 PE=4 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 5.000e-76 Identity = 175/297 (58.92%), Postives = 206/297 (69.36%), Query Frame = 1
BLAST of Spo18343.1 vs. UniProtKB/TrEMBL
Match: B9H2L7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s05230g PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 2.700e-74 Identity = 173/308 (56.17%), Postives = 211/308 (68.51%), Query Frame = 1
BLAST of Spo18343.1 vs. ExPASy Swiss-Prot
Match: IQD1_ARATH (Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.500e-17 Identity = 81/260 (31.15%), Postives = 128/260 (49.23%), Query Frame = 1
BLAST of Spo18343.1 vs. ExPASy Swiss-Prot
Match: IQD14_ARATH (Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.500e-12 Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = 1
BLAST of Spo18343.1 vs. TAIR (Arabidopsis)
Match: AT2G33990.1 (IQ-domain 9) HSP 1 Score: 240.4 bits (612), Expect = 1.500e-63 Identity = 148/279 (53.05%), Postives = 183/279 (65.59%), Query Frame = 1
BLAST of Spo18343.1 vs. TAIR (Arabidopsis)
Match: AT3G15050.1 (IQ-domain 10) HSP 1 Score: 203.4 bits (516), Expect = 2.000e-52 Identity = 130/271 (47.97%), Postives = 166/271 (61.25%), Query Frame = 1
BLAST of Spo18343.1 vs. TAIR (Arabidopsis)
Match: AT2G26180.1 (IQ-domain 6) HSP 1 Score: 134.4 bits (337), Expect = 1.100e-31 Identity = 92/236 (38.98%), Postives = 134/236 (56.78%), Query Frame = 1
BLAST of Spo18343.1 vs. TAIR (Arabidopsis)
Match: AT3G22190.1 (IQ-domain 5) HSP 1 Score: 128.3 bits (321), Expect = 8.200e-30 Identity = 73/213 (34.27%), Postives = 123/213 (57.75%), Query Frame = 1
BLAST of Spo18343.1 vs. TAIR (Arabidopsis)
Match: AT2G26410.1 (IQ-domain 4) HSP 1 Score: 109.4 bits (272), Expect = 3.900e-24 Identity = 86/269 (31.97%), Postives = 139/269 (51.67%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo18343.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo18343.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo18343.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo18343.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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