Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTACCCAAATGCTACCTCTACCGCTACGGCGCTACCTACCTTGTCAAAACAGTTACAAATTTTACAAGTAACGTCTTAATTAGGTCAAAACGTTACTCGCTACCTCAAACGCCACCGCCGAACTCGCCCTTAATCAAGGTGTATGGGGGGTGGTCTCTTTCCAACATACGATTATACGAGTAATTTGATTTCATCATACAGAAGAAACCTTTTACTCCGTATTTCCAATTGCAATGACCCAAACACCACCTTCTGCCCCAAAGGATGATTCCAATCGCCCCGAAGCTACAGCCTCACCGATCAATAAACCTGAAAATTCTCCAGAGGAGAGAGAAAATAAGGTAATCCTACTTAGTAATGCTTTTCGAATTTCCCCAATTCTATTTGTGTTTTTTTGGGTTCCATGCATTTTTCTATTGTTTATCTGACGCCTTATTACCTTTCAATCAATGGGTTATGGCAAGAATTTGAGTCGAAGAGTCAAGGATGTCGAAATTTCAGTGCCAATTGTTTATGGAACCATTGCATTTTGGCTTGGTAGGAAGGCGACTGAGTGAGTTTTGCTTCTCTTTTGTATGGTGTTTCGATTTTGTTATTACACACCAAGTGTTTGATGAAATGTGTAAGTGAAATTTTGTGTCTTTTTGTGAATGGTATGTATTTGTTATTTCCCACCAAGTGTTTGATGAAATGCCTGAGTGAAAGTTTGTGTTTTTTTTGTTTGGTGAATGGTATGTGAAGGTCTCAATCGCATAGATGGACTGTCTATGTTCGTGGGGGAACAAATGAAGATCTGAGTGTTGTAGTAAAGCGTGTTGTTTTTCAACTCCATCCCAGTTTCAATAATCCTATAAGAGTTGTTGATTCTCCGCCTTTCGAGTTGTCTGAATGCGGTTGGGGTGAATTTGAGATTGCCATTTCACTCTACTTCCACAGTGATGCCGGTGATCGGAAGTTGGACGTGTGAGTAAAATCTCTTTGATTTCTTTGGTTTTACTGTGTTTAAGTCAAGTGTGGCAATGAAGAGTGGTTTTCTCACTGAGTGTAAATTTTGTACAGATTTCACCATTTGAAGCTATACCCTTTAGAACAGAATGGTCCACAGTCTACCAAGAAGCCCGTTGTTATGGAAACATATGATGAAGTTGTTTTTCCTGACCCTTCGGAACAGTTTCTTGCTCGTGTACAGAATCACCCTGCTGTTGTTGTGCCTCGGCTTCCTGCAGGTTTGGAGTTGCCATCTTCGGGTATGATGTGGTTCTTCTTCCGTCTTTGTTTTTATCGTGGATTTACTTTTTGTGAACTTGATTTGTCGGTTTATTTTAATGACATAGCTTCTACTGAAGAGCGCAGAGGGAGCATGAAAGATCACCCACTAGGCCATTGGTTCATGAATTTTTCGGAAGCTGATGAATTGCTGAAACTTGCTGCAGCTCGTCAACAGGTAGTTGCAATCATCTAGTTTCCAAATGAACTTCAATTTTGTAGTTTTTCTTAATGTGGGATTGACATTGGTAACGATGGTAGGAATGTGTGAATGATAATCTCTAAATTAGTGCTTGGTTAAAACTTCATCCTTTTTTTTCATTTGTGGGGTGGTTAGCTTGTTTTATGGATGCCTTTCTCTTTTATGGTAAGAGGTGGATTCTGCAATCATATTGTTGGGTTTTGAGTTGAGCTTCTTTTTTTTTTCTTCTGGTTTCGATACAACATGTTGAGAAACTATTGTTAGAAAAAAGTAATGACAATGTTCAATGTTCAAAGTTCAAACAATAATCGTCATATTTTCTGCAAGGATTGGATTGACAATAGGAGACTACAGGGTGATGAGGTTGGGTACTTTGGGGCACATAAACCATCCCTTTGCCCACTATCACAAGCTAAATAACATATTATTTCATTCCTTCTGAGTTCAAAACTTCAAATAATGAGAGGGATCTTATAGGAAAAGTCACTAGGGTGTCTTGGTAATTCTTGATGACTTTGAGTTGCTTGGTATATCCGTATATTACGCACCTAAGTAAAACATTTTCTTCATGCATAACCTCGATAATTAAGAGGATGTCTTAGTTAGACTCTATGGTATGACACCACCTCACATATGATAAGTAGAGCATAAGTCCATAAATGGCCACACATCATTGCAAGTTCCAAACTTTTGACTTTCAAGAACGCATTATACACATGCATATAAATTATTGTGTGTGTGTGTGTGTTCGCGCGTGTGTGTGTGTGTGTGTGACTGTGTGTTTGATGATGCGCATGCACATTATGTGTGTAGGCCTGCACGTGTGCGCTTGGGTGTATGATATAGTACGTATATATACATTGCTCATTTGTCCATTGATTATGCATTTACGAACATGTTATTTAACTGCTTGCACATGCTCAAACCTGTTGCTCATTTTCTTAAACCAAGATGCAAATCTTATGACTGTAAATCTATTCATTTCACTATAGAAATCCTATTTTGGGTATTTCCTTCTGATTGACATTTTTCATTTATGGCACCTTTCTGTTTCGTGATAGGTACAAGCCCATATTGTCAAGCTAAGAAGACAAATGAGTATGGTGGAGGGCTCATCCGGGACTGCGGATCCTGCCTCTGCCTTTTAAATGTATTAGCTGACTTAGAAGAAATAGCTGCCCTAGCAGCTTTTTTGAGCTTGAAAGGATTGCTGATGTATGTGGTAAAATGTAACAACGTCAAATTCATAGCTTAACATGAATTTTCTTTTCATGTGAATTGAGGGCTTTGTAAATTGTATATTCTGGAAGTGATATTTGGGCACATTAATGTGGTTCTTACGTTTTCACTTACTTTCATGTCTACATATAAATTAATCAGCTTTTGTTCTCTTCTTTTTCCTTGACTTATCCACACCTCTCCCCTAAGCTGCTTTGATGGGGAATGGTCGAAGGTTTATGAAAACTCGATTATGAATTTTCTTGTATTTTTTTGCTCCTCTCTCTGCAACAAGCAAG CTACCCAAATGCTACCTCTACCGCTACGGCGCTACCTACCTTGTCAAAACAGTTACAAATTTTACAAGTAACGTCTTAATTAGGTCAAAACGTTACTCGCTACCTCAAACGCCACCGCCGAACTCGCCCTTAATCAAGGTGTATGGGGGGTGGTCTCTTTCCAACATACGATTATACGAGTAATTTGATTTCATCATACAGAAGAAACCTTTTACTCCGTATTTCCAATTGCAATGACCCAAACACCACCTTCTGCCCCAAAGGATGATTCCAATCGCCCCGAAGCTACAGCCTCACCGATCAATAAACCTGAAAATTCTCCAGAGGAGAGAGAAAATAAGAATTTGAGTCGAAGAGTCAAGGATGTCGAAATTTCAGTGCCAATTGTTTATGGAACCATTGCATTTTGGCTTGGTAGGAAGGCGACTGAGTCTCAATCGCATAGATGGACTGTCTATGTTCGTGGGGGAACAAATGAAGATCTGAGTGTTGTAGTAAAGCGTGTTGTTTTTCAACTCCATCCCAGTTTCAATAATCCTATAAGAGTTGTTGATTCTCCGCCTTTCGAGTTGTCTGAATGCGGTTGGGGTGAATTTGAGATTGCCATTTCACTCTACTTCCACAGTGATGCCGGTGATCGGAAGTTGGACGTATTTCACCATTTGAAGCTATACCCTTTAGAACAGAATGGTCCACAGTCTACCAAGAAGCCCGTTGTTATGGAAACATATGATGAAGTTGTTTTTCCTGACCCTTCGGAACAGTTTCTTGCTCGTGTACAGAATCACCCTGCTGTTGTTGTGCCTCGGCTTCCTGCAGGTTTGGAGTTGCCATCTTCGGCTTCTACTGAAGAGCGCAGAGGGAGCATGAAAGATCACCCACTAGGCCATTGGTTCATGAATTTTTCGGAAGCTGATGAATTGCTGAAACTTGCTGCAGCTCGTCAACAGGTACAAGCCCATATTGTCAAGCTAAGAAGACAAATGAGTATGGTGGAGGGCTCATCCGGGACTGCGGATCCTGCCTCTGCCTTTTAAATGTATTAGCTGACTTAGAAGAAATAGCTGCCCTAGCAGCTTTTTTGAGCTTGAAAGGATTGCTGATGTATGTGGTAAAATGTAACAACGTCAAATTCATAGCTTAACATGAATTTTCTTTTCATGTGAATTGAGGGCTTTGTAAATTGTATATTCTGGAAGTGATATTTGGGCACATTAATGTGGTTCTTACGTTTTCACTTACTTTCATGTCTACATATAAATTAATCAGCTTTTGTTCTCTTCTTTTTCCTTGACTTATCCACACCTCTCCCCTAAGCTGCTTTGATGGGGAATGGTCGAAGGTTTATGAAAACTCGATTATGAATTTTCTTGTATTTTTTTGCTCCTCTCTCTGCAACAAGCAAG ATGACCCAAACACCACCTTCTGCCCCAAAGGATGATTCCAATCGCCCCGAAGCTACAGCCTCACCGATCAATAAACCTGAAAATTCTCCAGAGGAGAGAGAAAATAAGAATTTGAGTCGAAGAGTCAAGGATGTCGAAATTTCAGTGCCAATTGTTTATGGAACCATTGCATTTTGGCTTGGTAGGAAGGCGACTGAGTCTCAATCGCATAGATGGACTGTCTATGTTCGTGGGGGAACAAATGAAGATCTGAGTGTTGTAGTAAAGCGTGTTGTTTTTCAACTCCATCCCAGTTTCAATAATCCTATAAGAGTTGTTGATTCTCCGCCTTTCGAGTTGTCTGAATGCGGTTGGGGTGAATTTGAGATTGCCATTTCACTCTACTTCCACAGTGATGCCGGTGATCGGAAGTTGGACGTATTTCACCATTTGAAGCTATACCCTTTAGAACAGAATGGTCCACAGTCTACCAAGAAGCCCGTTGTTATGGAAACATATGATGAAGTTGTTTTTCCTGACCCTTCGGAACAGTTTCTTGCTCGTGTACAGAATCACCCTGCTGTTGTTGTGCCTCGGCTTCCTGCAGGTTTGGAGTTGCCATCTTCGGCTTCTACTGAAGAGCGCAGAGGGAGCATGAAAGATCACCCACTAGGCCATTGGTTCATGAATTTTTCGGAAGCTGATGAATTGCTGAAACTTGCTGCAGCTCGTCAACAGGTACAAGCCCATATTGTCAAGCTAAGAAGACAAATGAGTATGGTGGAGGGCTCATCCGGGACTGCGGATCCTGCCTCTGCCTTTTAA MTQTPPSAPKDDSNRPEATASPINKPENSPEERENKNLSRRVKDVEISVPIVYGTIAFWLGRKATESQSHRWTVYVRGGTNEDLSVVVKRVVFQLHPSFNNPIRVVDSPPFELSECGWGEFEIAISLYFHSDAGDRKLDVFHHLKLYPLEQNGPQSTKKPVVMETYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEERRGSMKDHPLGHWFMNFSEADELLKLAAARQQVQAHIVKLRRQMSMVEGSSGTADPASAF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo18052.1 vs. NCBI nr
Match: gi|902224681|gb|KNA19850.1| (hypothetical protein SOVF_057580 isoform A [Spinacia oleracea]) HSP 1 Score: 538.1 bits (1385), Expect = 8.700e-150 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1
BLAST of Spo18052.1 vs. NCBI nr
Match: gi|902224682|gb|KNA19851.1| (hypothetical protein SOVF_057580 isoform B [Spinacia oleracea]) HSP 1 Score: 525.0 bits (1351), Expect = 7.600e-146 Identity = 263/267 (98.50%), Postives = 263/267 (98.50%), Query Frame = 1
BLAST of Spo18052.1 vs. NCBI nr
Match: gi|731337582|ref|XP_010679864.1| (PREDICTED: transcription initiation factor TFIID subunit 14b [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 446.8 bits (1148), Expect = 2.600e-122 Identity = 223/270 (82.59%), Postives = 242/270 (89.63%), Query Frame = 1
BLAST of Spo18052.1 vs. NCBI nr
Match: gi|902043419|gb|KNA02800.1| (hypothetical protein SOVF_215260 [Spinacia oleracea]) HSP 1 Score: 409.5 bits (1051), Expect = 4.600e-111 Identity = 207/238 (86.97%), Postives = 207/238 (86.97%), Query Frame = 1
BLAST of Spo18052.1 vs. NCBI nr
Match: gi|1012128372|ref|XP_015964272.1| (PREDICTED: transcription initiation factor TFIID subunit 14b [Arachis duranensis]) HSP 1 Score: 373.6 bits (958), Expect = 2.800e-100 Identity = 188/272 (69.12%), Postives = 220/272 (80.88%), Query Frame = 1
BLAST of Spo18052.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK29_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057580 PE=4 SV=1) HSP 1 Score: 538.1 bits (1385), Expect = 6.000e-150 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1
BLAST of Spo18052.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK05_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057580 PE=4 SV=1) HSP 1 Score: 525.0 bits (1351), Expect = 5.300e-146 Identity = 263/267 (98.50%), Postives = 263/267 (98.50%), Query Frame = 1
BLAST of Spo18052.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F1R4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g130030 PE=4 SV=1) HSP 1 Score: 446.8 bits (1148), Expect = 1.800e-122 Identity = 223/270 (82.59%), Postives = 242/270 (89.63%), Query Frame = 1
BLAST of Spo18052.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6U8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_215260 PE=4 SV=1) HSP 1 Score: 409.5 bits (1051), Expect = 3.200e-111 Identity = 207/238 (86.97%), Postives = 207/238 (86.97%), Query Frame = 1
BLAST of Spo18052.1 vs. UniProtKB/TrEMBL
Match: A0A0B2RW51_GLYSO (Protein AF-9 like OS=Glycine soja GN=glysoja_003160 PE=4 SV=1) HSP 1 Score: 370.5 bits (950), Expect = 1.700e-99 Identity = 178/241 (73.86%), Postives = 207/241 (85.89%), Query Frame = 1
BLAST of Spo18052.1 vs. ExPASy Swiss-Prot
Match: TA14B_ARATH (Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana GN=TAF14B PE=1 SV=1) HSP 1 Score: 330.5 bits (846), Expect = 1.700e-89 Identity = 158/263 (60.08%), Postives = 204/263 (77.57%), Query Frame = 1
BLAST of Spo18052.1 vs. ExPASy Swiss-Prot
Match: TAF14_ARATH (Transcription initiation factor TFIID subunit 14 OS=Arabidopsis thaliana GN=TAF14 PE=1 SV=1) HSP 1 Score: 287.7 bits (735), Expect = 1.300e-76 Identity = 138/243 (56.79%), Postives = 181/243 (74.49%), Query Frame = 1
BLAST of Spo18052.1 vs. ExPASy Swiss-Prot
Match: AF9_ASHGO (Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YAF9 PE=3 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 2.700e-34 Identity = 67/158 (42.41%), Postives = 106/158 (67.09%), Query Frame = 1
BLAST of Spo18052.1 vs. ExPASy Swiss-Prot
Match: AF9_YEAST (Protein AF-9 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAF9 PE=1 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 2.800e-31 Identity = 64/171 (37.43%), Postives = 105/171 (61.40%), Query Frame = 1
BLAST of Spo18052.1 vs. ExPASy Swiss-Prot
Match: YETS4_MOUSE (YEATS domain-containing protein 4 OS=Mus musculus GN=Yeats4 PE=2 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 6.200e-31 Identity = 66/136 (48.53%), Postives = 92/136 (67.65%), Query Frame = 1
BLAST of Spo18052.1 vs. TAIR (Arabidopsis)
Match: AT5G45600.1 (YEATS family protein) HSP 1 Score: 330.5 bits (846), Expect = 9.700e-91 Identity = 158/263 (60.08%), Postives = 204/263 (77.57%), Query Frame = 1
BLAST of Spo18052.1 vs. TAIR (Arabidopsis)
Match: AT2G18000.2 (TBP-associated factor 14) HSP 1 Score: 287.7 bits (735), Expect = 7.200e-78 Identity = 138/243 (56.79%), Postives = 181/243 (74.49%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo18052.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo18052.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo18052.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo18052.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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