Spo17924 (gene)

Overview
NameSpo17924
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase (2.7.7.6)
Locationchr2 : 19161043 .. 19163228 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCAGGAGAAATTAGTACAAGAAGCCGTAGATACACTTCTTGATAATGGAATCCGTGGCCAGCCAATGAGGGATGGTCATAATAAAGTTTACAAGTCATTTTCAGATGTAATTGAGGGTAAAGAGGGAAGATTTCGTGAGACTTTACTTGGTAAACGGGTCGATTATTCCGGACGTTCCGTCATTGTCGTAGGCCCTTCACTTTCATTACACCGATGTGGATTGCCTCGTGAAATTGCAATAGAGCTCTTCCAGACATTTGTAATTCGTGGTCTAATTAGGCAACATCTTGCTTCGAACATAGGAGTTGCTAAGCGTAAAATTCGGGAAAAAGAGCCGATTGTATGGAAAATACTGCAGGAAGTTATGCAGGGGCATCCTGTATTATTAAATAGAGCACCTACTCTTCATAGATTAGGTATACAGGCGTTCCAACCTATTTTAGTGGAAGGGCGCGCTATTTGTTTACATCCGTTAGTTTGTAAAGGATTCAACGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCCCGTTTACTTATGTTTTCTCATATGAATCTTTTGTCTCCAGCTATTGGCGATCCCATTTCCGTACCAACCCAAGATATGCTTATTGGACTCTATATATTAACGAGCGGGAATCGTCGAGGTATTTGTGCAAATAGATATAATCCATGGAATCACAAAACCTATCAAAATGAAAGAATTGATGATACTAATTATAAGTCTATGAAAGAACCCTTTTTTTGTAATTTCTATGATGCAATTGGAGCTTATCGTCAGAAAAGAATTCATTTAGATAGCCCTTTGTGGCTCCGGTGGCAACTAGATCAACGCATTATTGCTTCAAAAGAAGCTCCCATTGAAGTTCACTATGAATCTTTGGGCACCTATCATGAGATTTATGCGCACTATCTAATAATAAGAAGTGTAAAAAAAGAAATTATTGATATATATATTCGAACTACTGTTGGTCATATTTCTCTTTATCGAGAAATTGAAGAAGCTATACAAGGATTTTATCAAGCCTGCTCATAAAGTACTTAATCATATTTGGCGAATTCGAGTCTTTCAGGTTCAACTAGGATTATAATTTTTGAATTTTTAGGTCAATTAAGATCAAGAAAAGGAAGTTTTCTAATCACTAACTCAATCCCATTCATTGTCGAATCCTACTCAGCAGAATATGGAGGTACTTATGGCAGAACGGGCCAATTTGGTCTTTCACAATAAAGCGATAGATGGAACTGCCATGAAACGACTTATTAGTAGATTAATAGATCATTTTGGAATGGCATATACGTCACACATCCTAGATCAACTAAAGACTCTGGGTTTCCAGCAAGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAAGGATGGCTAGTCCAAGATGCTGAACAGCAAAGTTTGATTTTGGAAAAACACCACCATTATGGGAATGTACACGCGGTAGAAAAATTACGTCAATCCATTGAGATATGGTATTCTACAAGTGAATATTTGCGACAAGAAATGAATCCCAATTTTAGGATGACTGACCCTTATAATCCAGTCCATATAATGTCTTTTTCGGGAGCTAGAGGAAATGTGTCTCAGGTACATCAATTAGTAGGTATGAGAGGATTAATGTCGGATCCACAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGGGAAGGACTCTCTTTAACAGAATATATAATTTCTTGTTACGGAGCCCGCAAAGGGGTTGTGGATACTGCTGTACGAACATCCGATGCTGGATATCTCACGCGCAGGCTTGTCGAAGTAGTTCAACATATTGTTGTGCGTAGAAGAGATTGTGGCACCATTCGAGGTATTTCTGTAAGTCCTCAAAACAGTACGATGCCGGAAAGAATTTTGATCCAAACATTAATTGGTCGTGTATTAGCAGACGATATATATATGGGTTCACGATGCATTGCCACCCGAAATCAAGATATCGGGGTTGGACTTGTCAATCGATTCATAACGCTTCGAACCCAACTAATATCCATCCGAACTCCTTTTACTTGTAGGAGTGCGTCTTGGATCTGTCGATTATGTTATGGCCGGAGTCCTACTCACGGCGGCCTGGTTGAATTGGGAGAAGCTGTAG

mRNA sequence

ATGTGTCAGGAGAAATTAGTACAAGAAGCCGTAGATACACTTCTTGATAATGGAATCCGTGGCCAGCCAATGAGGGATGGTCATAATAAAGTTTACAAGTCATTTTCAGATGTAATTGAGGGTAAAGAGGGAAGATTTCGTGAGACTTTACTTGGTAAACGGGTCGATTATTCCGGACGTTCCGTCATTGTCGTAGGCCCTTCACTTTCATTACACCGATGTGGATTGCCTCGTGAAATTGCAATAGAGCTCTTCCAGACATTTGTAATTCGTGGTCTAATTAGGCAACATCTTGCTTCGAACATAGGAGTTGCTAAGCGTAAAATTCGGGAAAAAGAGCCGATTGTATGGAAAATACTGCAGGAAGTTATGCAGGGGCATCCTGTATTATTAAATAGAGCACCTACTCTTCATAGATTAGGTATACAGGCGTTCCAACCTATTTTAGTGGAAGGGCGCGCTATTTGTTTACATCCGTTAGTTTGTAAAGGATTCAACGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCCCGTTTACTTATGTTTTCTCATATGAATCTTTTGTCTCCAGCTATTGGCGATCCCATTTCCGTACCAACCCAAGATATGCTTATTGGACTCTATATATTAACGAGCGGGAATCGTCGAGGAGTGCGTCTTGGATCTGTCGATTATGTTATGGCCGGAGTCCTACTCACGGCGGCCTGGTTGAATTGGGAGAAGCTGTAG

Coding sequence (CDS)

ATGTGTCAGGAGAAATTAGTACAAGAAGCCGTAGATACACTTCTTGATAATGGAATCCGTGGCCAGCCAATGAGGGATGGTCATAATAAAGTTTACAAGTCATTTTCAGATGTAATTGAGGGTAAAGAGGGAAGATTTCGTGAGACTTTACTTGGTAAACGGGTCGATTATTCCGGACGTTCCGTCATTGTCGTAGGCCCTTCACTTTCATTACACCGATGTGGATTGCCTCGTGAAATTGCAATAGAGCTCTTCCAGACATTTGTAATTCGTGGTCTAATTAGGCAACATCTTGCTTCGAACATAGGAGTTGCTAAGCGTAAAATTCGGGAAAAAGAGCCGATTGTATGGAAAATACTGCAGGAAGTTATGCAGGGGCATCCTGTATTATTAAATAGAGCACCTACTCTTCATAGATTAGGTATACAGGCGTTCCAACCTATTTTAGTGGAAGGGCGCGCTATTTGTTTACATCCGTTAGTTTGTAAAGGATTCAACGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCCCGTTTACTTATGTTTTCTCATATGAATCTTTTGTCTCCAGCTATTGGCGATCCCATTTCCGTACCAACCCAAGATATGCTTATTGGACTCTATATATTAACGAGCGGGAATCGTCGAGGAGTGCGTCTTGGATCTGTCGATTATGTTATGGCCGGAGTCCTACTCACGGCGGCCTGGTTGAATTGGGAGAAGCTGTAG

Protein sequence

MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGVRLGSVDYVMAGVLLTAAWLNWEKL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17924.1Spo17924.1mRNA


Homology
[Close]
BLAST of Spo17924.1 vs. NCBI nr
Match: gi|11497515|ref|NP_054923.1| (RNA polymerase beta' subunit [Spinacia oleracea])

HSP 1 Score: 462.6 bits (1189), Expect = 4.400e-127
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. NCBI nr
Match: gi|1020267075|gb|AMZ03426.1| (DNA-directed RNA polymerase subunit gamma (chloroplast) [Bienertia sinuspersici])

HSP 1 Score: 462.6 bits (1189), Expect = 4.400e-127
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. NCBI nr
Match: gi|836613821|ref|YP_009143630.1| (RNA polymerase beta subunit (chloroplast) [Salicornia brachiata])

HSP 1 Score: 462.2 bits (1188), Expect = 5.700e-127
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEP+VWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPVVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. NCBI nr
Match: gi|836642794|ref|YP_009143798.1| (RNA polymerase beta subunit (chloroplast) [Salicornia bigelovii])

HSP 1 Score: 462.2 bits (1188), Expect = 5.700e-127
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEP+VWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPVVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. NCBI nr
Match: gi|910354308|ref|YP_009160793.1| (RNA polymerase beta (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 461.8 bits (1187), Expect = 7.500e-127
Identity = 226/229 (98.69%), Postives = 229/229 (100.00%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNK+YKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKIYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIG+AKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGIAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Match: A0A159ZRP9_9CARY (DNA-directed RNA polymerase subunit gamma OS=Bienertia sinuspersici GN=rpoC1 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 3.100e-127
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXT8_SALEU (DNA-directed RNA polymerase subunit OS=Salicornia europaea GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 4.000e-127
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEP+VWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPVVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXJ2_SALBI (DNA-directed RNA polymerase subunit OS=Salicornia bigelovii GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 4.000e-127
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEP+VWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPVVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QX55_9CARY (DNA-directed RNA polymerase subunit OS=Salicornia brachiata GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 4.000e-127
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEP+VWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPVVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K865_9CARY (DNA-directed RNA polymerase subunit OS=Haloxylon ammodendron GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 5.200e-127
Identity = 226/229 (98.69%), Postives = 229/229 (100.00%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNK+YKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKIYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIG+AKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGIAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Match: RPOC1_SPIOL (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 2.700e-129
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Match: RPOC1_BUXMI (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 1.200e-127
Identity = 224/229 (97.82%), Postives = 228/229 (99.56%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQH+ASNIGVAK KIREKEPIVW+IL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY+LTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Match: RPOC1_ATRBE (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 456.4 bits (1173), Expect = 2.000e-127
Identity = 223/229 (97.38%), Postives = 227/229 (99.13%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAK KIREKEPIVW+IL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQ EARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY+LTSGNRRG+
Sbjct: 502 SLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Match: RPOC1_COFAR (DNA-directed RNA polymerase subunit beta' OS=Coffea arabica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 2.600e-127
Identity = 222/229 (96.94%), Postives = 228/229 (99.56%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPM+DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAK KIREKEPIVW+IL
Sbjct: 385 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKNKIREKEPIVWEIL 444

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLY+LTSGNRRG+
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGI 553
[Close]
BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Match: RPOC1_ACOCL (DNA-directed RNA polymerase subunit gamma OS=Acorus calamus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 3.400e-127
Identity = 222/229 (96.94%), Postives = 227/229 (99.13%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIG+AK KIREKEPIVW+IL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGIAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY+LT GNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTMGNRRGI 550
[Close]
BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 450.3 bits (1157), Expect = 7.900e-127
Identity = 220/229 (96.07%), Postives = 226/229 (98.69%), Query Frame = 1 

		  

Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAK +IREK+PIVW+IL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR ICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY+LTSG RRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGI 550
[Close]
BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Match: AT5G60040.2 (nuclear RNA polymerase C1)

HSP 1 Score: 109.8 bits (273), Expect = 2.500e-24
Identity = 68/208 (32.69%), Postives = 108/208 (51.92%), Query Frame = 1 

		  

Query: 39  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELF 98
           ++GK GRFR  L GKRV+++GR+VI   P+L +   G+P  +A             IE  
Sbjct: 356 LKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKL 415

Query: 99  QTFVIRGLIRQHLASNI-----------GVAKRKIREKEPIVWKILQEVMQGHPVLLNRA 158
           +  V  G  +   A N+           G  +++I ++  I   + + + +G  VL NR 
Sbjct: 416 RQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQ 475

Query: 159 PTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFS 218
           P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM  
Sbjct: 476 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGV 535

Query: 219 HMNLLSPAIGDPISVPTQDMLIGLYILT 223
             NL +P  G+ +   TQD L   +++T
Sbjct: 536 QNNLCTPKNGEILVASTQDFLTSSFLIT 563
[Close]
BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Match: AT4G35800.1 (RNA polymerase II large subunit)

HSP 1 Score: 107.5 bits (267), Expect = 1.300e-23
Identity = 70/245 (28.57%), Postives = 114/245 (46.53%), Query Frame = 1 

		  

Query: 5   KLVQEAVDTLLDNGIRGQPMRDGHN-KVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 64
           +L+Q  + T  DN + GQP     + +  KS    ++ KEGR R  L+GKRVD+S R+VI
Sbjct: 305 QLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 364

Query: 65  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLAS----------------------- 124
              P++++   G+P  IA+ L     +     + L                         
Sbjct: 365 TPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDG 424

Query: 125 ---NIGVAKRKIREKEPIVWKILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL 184
              ++   K+   +   + +K+ + +  G  VL NR P+LH++ I   +  ++      L
Sbjct: 425 QRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRL 484

Query: 185 HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIG 223
           +  V   +NADFDGD+M +HVP S E +AE   LM     ++SP    P+    QD L+G
Sbjct: 485 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLG 544
[Close]
BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Match: AT1G63020.1 (nuclear RNA polymerase D1A)

HSP 1 Score: 80.9 bits (198), Expect = 1.300e-15
Identity = 55/191 (28.80%), Postives = 95/191 (49.74%), Query Frame = 1 

		  

Query: 47  RETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASN----- 106
           ++ LLGKR D++ R+V+V  PSL L+  G+P  IA  L  +  +    ++ L ++     
Sbjct: 310 KDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTL 369

Query: 107 IGVAKRKIREKEPIVW----------KILQEVMQGHPVLLNRAPTLHRLGIQAFQP-ILV 166
           +   +  +R  + +V           KI + +M G  VL+NR P++H+  + A    IL 
Sbjct: 370 LDNKEMHVRRGDRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILP 429

Query: 167 EGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVP 222
               + L+P+ C  F  DFDGD +  +VP S++A+ E   L+     L++   G  +   
Sbjct: 430 TTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSL 489
[Close]
BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Match: AT2G40030.1 (nuclear RNA polymerase D1B)

HSP 1 Score: 72.4 bits (176), Expect = 4.500e-13
Identity = 67/232 (28.88%), Postives = 103/232 (44.40%), Query Frame = 1 

		  

Query: 11  VDTLLD-----NGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVV 70
           VDT L         R   MR G +K+  S S   +    + R   + K   +S RSVI  
Sbjct: 273 VDTYLQVRGTAKAARNIDMRYGVSKISDSSSS--KAWTEKMRTLFIRKGSGFSSRSVITG 332

Query: 71  GPSLSLHRCGLPREIAIEL-FQTFVI---RGLIRQHLASNI------GVAKRKIRE--KE 130
                ++  G+P EIA  + F+  V    RG +++ +   +      G     +R+  K 
Sbjct: 333 DAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQGSTTYSLRDGSKG 392

Query: 131 PIVWK----ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 190
               K    + + VM G  V +NR PT H+  +QA +  + E   + ++PL+C   +ADF
Sbjct: 393 HTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADF 452

Query: 191 DGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYIL 222
           DGD + +  P SL A+AE   L      LLS   G  I     D L+ L ++
Sbjct: 453 DGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVM 502
The following BLAST results are available for this feature:
BLAST of Spo17924.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|11497515|ref|NP_054923.1|4.4e-12799.5RNA polymerase beta' subunit [... [more]
gi|1020267075|gb|AMZ03426.1|4.4e-12799.5DNA-directed RNA polymerase su... [more]
gi|836613821|ref|YP_009143630.1|5.7e-12799.1RNA polymerase beta subunit (c... [more]
gi|836642794|ref|YP_009143798.1|5.7e-12799.1RNA polymerase beta subunit (c... [more]
gi|910354308|ref|YP_009160793.1|7.5e-12798.6RNA polymerase beta (chloropla... [more]
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BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A159ZRP9_9CARY3.1e-12799.5DNA-directed RNA polymerase su... [more]
A0A0G2QXT8_SALEU4.0e-12799.1DNA-directed RNA polymerase su... [more]
A0A0G2QXJ2_SALBI4.0e-12799.1DNA-directed RNA polymerase su... [more]
A0A0G2QX55_9CARY4.0e-12799.1DNA-directed RNA polymerase su... [more]
A0A0K0K865_9CARY5.2e-12798.6DNA-directed RNA polymerase su... [more]
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BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPOC1_SPIOL2.7e-12999.5DNA-directed RNA polymerase su... [more]
RPOC1_BUXMI1.2e-12797.8DNA-directed RNA polymerase su... [more]
RPOC1_ATRBE2.0e-12797.3DNA-directed RNA polymerase su... [more]
RPOC1_COFAR2.6e-12796.9DNA-directed RNA polymerase su... [more]
RPOC1_ACOCL3.4e-12796.9DNA-directed RNA polymerase su... [more]
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BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
ATCG00180.17.9e-12796.0DNA-directed RNA polymerase fa... [more]
AT5G60040.22.5e-2432.6nuclear RNA polymerase C1[more]
AT4G35800.11.3e-2328.5RNA polymerase II large subuni... [more]
AT1G63020.11.3e-1528.8nuclear RNA polymerase D1A[more]
AT2G40030.14.5e-1328.8nuclear RNA polymerase D1B[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 106..192
score: 1.8E-27coord: 52..101
score: 2.
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 1..222
score: 1.6E
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 197..224
score: 1.
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 3..50
score: 2.1
NoneNo IPR availableGENE3D2.40.40.20coord: 57..84
score: 7.9E-39coord: 125..196
score: 7.9
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..230
score: 4.2E
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 3..226
score: 5.72E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0009853 photorespiration
biological_process GO:0006554 lysine catabolic process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0009451 RNA modification
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0015979 photosynthesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008152 metabolic process
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0019253 reductive pentose-phosphate cycle
cellular_component GO:0009523 photosystem II
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005730 nucleolus
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0009055 electron transfer activity
RNA-Seq Expression