Spo17923 (gene)

Overview
NameSpo17923
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase subunit beta (2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta)
Locationchr2 : 19156879 .. 19159296 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCGGCGACTGAACCTTGATATACCCGAAAATAATACGTTTTTGTTACCGCGGGATATATTGGCAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGATGATATGAATCATTTGAAACATAAACGTATTAGGTCTGTCGCAGATCTCTTACAAGATCAATTCGGATTGGCTCTAGTTCGTTTAGAAAACGTGGTTCGAGGAACTATAAGTGGAGCAATTCGGCATAAATTAATACCGACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACGACTTTTGAATCTTTTTTTGGATTACACCCATTATCTCAAGTTTTGGATCGAACTAATCCATTGACACAAATAGTTCATGGGAGAAAATTGAGTTATTTGGGTCCTGGGGGATTGACAGGGCGAACCGCTAGTTTTCGGATACGAGATATCCATCCTAGTCACTACGGGCGTATTTGCCCAATTGACACATCTGAAGGAATCAATGTTGGGCTTATTGGGTCCTTAGCAATTCATGCGAGAATTGGTCCTTGGGGGTCTCTAGAAAGCCCTTATTATGAAATTTCTGAGAGATCAAAAAGGGTACAGATGCTTTATTTATCGCCAAGTAGGGATGAATACTATATGTTAGCGTCCGGAAATTCTTTGGCCCTGAATCAAGGTATTCAGGAAGAACAGGTTGTTCCAGCTCGATATCGTCAAGAATTCCTGACTATTGCGTGGGAACAGGTTCATTTTCGAAGTATCTTTTCCTTCCAATATTTTTCTATTGGAGCTTCTCTCATTCCTTTTATCGAGCACAATGATGCAAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCGCTTTCTCAGTCCGAGAAGTGCATTGTTGGAACGGGGTTGGAACGCCAAGTGGCCCTAGATTCGGGGGTTCTCGCTATAGCCGAACATGAGGGAAAGATCATTTATACCAACACTGACAAGATTGTTTTATTAGGGAATGGGAATACTGTAAGCATTCCATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCATCAAAAACCTCAGATTCCGCGGGGGAAATGTGTTAAAAAGGGGCAAATTTTAGCAGATGGTGCCGCTACAGTTGGTGGTGAGCTAGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCGTGGGAAGGTTACAATTTTGAAGATGCGGTACTCATTAGTGAGCGTCTTGTGTATGAAGATATTTATACTTCTTTTCACATACGGAAATATGAAATTCAAACTTATGTGACAAGTCAAGGTCCTGAAAAGGTCACTAGCGAAATACCACATTTAGAAGCTCATTTACTCCGCAATTTAGACAAAAATGGAATTGTGAGGTTGGGATCATGGGTAGAAACAGGTGATATTTTGGTAGGTAAATTAACGCCTCAGATGGCAAAAGAATCTTCGTATGCCCCCGAAGATAGATTATTACGAGCTATACTTGGCATTCAGGTATCCACATCAAAGGAAACTTGTCTAAAACTACCTATAGGTGGTAGGGGCCGAGTTATTGATGTGCGATGGATCCAGAAAAAGGGGGGTTCCAGTTATAATCCAGAAACGATTCATGTATATATTTCACAAAAACGTGAAATCAAAGTAGGCGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCATTTCCAGAATTTTGCTTAGACAAGATATGCCATATTTGCAAGATGGAAGACCTGTTGATATGATCTTTAACCCACTAGGAGTACCTTCACGAATGAATGTAGGACAGATATTTGAATGTTCGCTCGGGTTAGCGGGGAGTCTGCTAGATAGACATTATCGAATAGCACCTTTTGATGAGAGATATGAGCAAGAGGCTTCGAGAAAACTGGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAATCCGTGGGTATTTGAACCCGAGTATCCGGGAAAGAGTCGAATATTTGATGGAAGAACGGGAGATCCTTTTGAACAACCCGTTATAATAGGAAATCCTTATATATTGAAATTAATTCATCAAGTTGATGATAAAATTCATGGACGTTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTCGAGGAAGAGCCAAGCAAGGAGGACAGCGGGTAGGAGAAATGGAGGTTTGGGCTCTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCAGATCATATTAAAGCTCGCCAGGAAGTACTTGGTACTACGATCATTGGGGGAACAATACCTAACCCTGAAGATGCTCCAGAATCTTTTCGACTGCTCGTCCGAGAACTACGATCTTTGGCTCTGGAACTGAATCATTTCCTTGTATCTGAGAGGAATTTCCAGATTAATAGGATGGAAGCTTAA

mRNA sequence

ATGAACCGGCGACTGAACCTTGATATACCCGAAAATAATACGTTTTTGTTACCGCGGGATATATTGGCAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGATGATATGAATCATTTGAAACATAAACGTATTAGGTCTGTCGCAGATCTCTTACAAGATCAATTCGGATTGGCTCTAGTTCGTTTAGAAAACGTGGTTCGAGGAACTATAAGTGGAGCAATTCGGCATAAATTAATACCGACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACGACTTTTGAATCTTTTTTTGGATTACACCCATTATCTCAAGTTTTGGATCGAACTAATCCATTGACACAAATAGTTCATGGGAGAAAATTGAGTTATTTGGGTCCTGGGGGATTGACAGGGCGAACCGCTAGTTTTCGGATACGAGATATCCATCCTAGTCACTACGGGCGTATTTGCCCAATTGACACATCTGAAGGAATCAATGTTGGGCTTATTGGGTCCTTAGCAATTCATGCGAGAATTGGTCCTTGGGGGTCTCTAGAAAGCCCTTATTATGAAATTTCTGAGAGATCAAAAAGGGTACAGATGCTTTATTTATCGCCAAGTAGGGATGAATACTATATGTTAGCGTCCGGAAATTCTTTGGCCCTGAATCAAGGTATTCAGGAAGAACAGGTTGTTCCAGCTCGATATCGTCAAGAATTCCTGACTATTGCGTGGGAACAGGTTCATTTTCGAAGTATCTTTTCCTTCCAATATTTTTCTATTGGAGCTTCTCTCATTCCTTTTATCGAGCACAATGATGCAAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCGCTTTCTCAGTCCGAGAAGTGCATTGTTGGAACGGGGTTGGAACGCCAAGTGGCCCTAGATTCGGGGGTTCTCGCTATAGCCGAACATGAGGGAAAGATCATTTATACCAACACTGACAAGATTGTTTTATTAGGGAATGGGAATACTGTAAGCATTCCATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCATCAAAAACCTCAGATTCCGCGGGGGAAATGTGTTAAAAAGGGGCAAATTTTAGCAGATGGTGCCGCTACAGTTGGTGGTGAGCTAGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCGTGGGAAGGTTACAATTTTGAAGATGCGGTACTCATTAGTGAGCGTCTTGTGTATGAAGATATTTATACTTCTTTTCACATACGGAAATATGAAATTCAAACTTATGTGACAAGTCAAGGTCCTGAAAAGGTCACTAGCGAAATACCACATTTAGAAGCTCATTTACTCCGCAATTTAGACAAAAATGGAATTGTGAGGTTGGGATCATGGGTAGAAACAGGTGATATTTTGGTAGGTAAATTAACGCCTCAGATGGCAAAAGAATCTTCGTATGCCCCCGAAGATAGATTATTACGAGCTATACTTGGCATTCAGGTATCCACATCAAAGGAAACTTGTCTAAAACTACCTATAGGTGGTAGGGGCCGAGTTATTGATGTGCGATGGATCCAGAAAAAGGGGGGTTCCAGTTATAATCCAGAAACGATTCATGTATATATTTCACAAAAACGTGAAATCAAAGTAGGCGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCATTTCCAGAATTTTGCTTAGACAAGATATGCCATATTTGCAAGATGGAAGACCTGTTGATATGATCTTTAACCCACTAGGAGTACCTTCACGAATGAATGTAGGACAGATATTTGAATGTTCGCTCGGGTTAGCGGGGAGTCTGCTAGATAGACATTATCGAATAGCACCTTTTGATGAGAGATATGAGCAAGAGGCTTCGAGAAAACTGGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAATCCGTGGGTATTTGAACCCGAGTATCCGGGAAAGAGTCGAATATTTGATGGAAGAACGGGAGATCCTTTTGAACAACCCGTTATAATAGGAAATCCTTATATATTGAAATTAATTCATCAAGTTGATGATAAAATTCATGGACGTTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTCGAGGAAGAGCCAAGCAAGGAGGACAGCGGGTAGGAGAAATGGAGGTTTGGGCTCTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCAGATCATATTAAAGCTCGCCAGGAAGTACTTGGTACTACGATCATTGGGGGAACAATACCTAACCCTGAAGATGCTCCAGAATCTTTTCGACTGCTCGTCCGAGAACTACGATCTTTGGCTCTGGAACTGAATCATTTCCTTGTATCTGAGAGGAATTTCCAGATTAATAGGATGGAAGCTTAA

Coding sequence (CDS)

ATGAACCGGCGACTGAACCTTGATATACCCGAAAATAATACGTTTTTGTTACCGCGGGATATATTGGCAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGATGATATGAATCATTTGAAACATAAACGTATTAGGTCTGTCGCAGATCTCTTACAAGATCAATTCGGATTGGCTCTAGTTCGTTTAGAAAACGTGGTTCGAGGAACTATAAGTGGAGCAATTCGGCATAAATTAATACCGACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACGACTTTTGAATCTTTTTTTGGATTACACCCATTATCTCAAGTTTTGGATCGAACTAATCCATTGACACAAATAGTTCATGGGAGAAAATTGAGTTATTTGGGTCCTGGGGGATTGACAGGGCGAACCGCTAGTTTTCGGATACGAGATATCCATCCTAGTCACTACGGGCGTATTTGCCCAATTGACACATCTGAAGGAATCAATGTTGGGCTTATTGGGTCCTTAGCAATTCATGCGAGAATTGGTCCTTGGGGGTCTCTAGAAAGCCCTTATTATGAAATTTCTGAGAGATCAAAAAGGGTACAGATGCTTTATTTATCGCCAAGTAGGGATGAATACTATATGTTAGCGTCCGGAAATTCTTTGGCCCTGAATCAAGGTATTCAGGAAGAACAGGTTGTTCCAGCTCGATATCGTCAAGAATTCCTGACTATTGCGTGGGAACAGGTTCATTTTCGAAGTATCTTTTCCTTCCAATATTTTTCTATTGGAGCTTCTCTCATTCCTTTTATCGAGCACAATGATGCAAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCGCTTTCTCAGTCCGAGAAGTGCATTGTTGGAACGGGGTTGGAACGCCAAGTGGCCCTAGATTCGGGGGTTCTCGCTATAGCCGAACATGAGGGAAAGATCATTTATACCAACACTGACAAGATTGTTTTATTAGGGAATGGGAATACTGTAAGCATTCCATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCATCAAAAACCTCAGATTCCGCGGGGGAAATGTGTTAAAAAGGGGCAAATTTTAGCAGATGGTGCCGCTACAGTTGGTGGTGAGCTAGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCGTGGGAAGGTTACAATTTTGAAGATGCGGTACTCATTAGTGAGCGTCTTGTGTATGAAGATATTTATACTTCTTTTCACATACGGAAATATGAAATTCAAACTTATGTGACAAGTCAAGGTCCTGAAAAGGTCACTAGCGAAATACCACATTTAGAAGCTCATTTACTCCGCAATTTAGACAAAAATGGAATTGTGAGGTTGGGATCATGGGTAGAAACAGGTGATATTTTGGTAGGTAAATTAACGCCTCAGATGGCAAAAGAATCTTCGTATGCCCCCGAAGATAGATTATTACGAGCTATACTTGGCATTCAGGTATCCACATCAAAGGAAACTTGTCTAAAACTACCTATAGGTGGTAGGGGCCGAGTTATTGATGTGCGATGGATCCAGAAAAAGGGGGGTTCCAGTTATAATCCAGAAACGATTCATGTATATATTTCACAAAAACGTGAAATCAAAGTAGGCGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCATTTCCAGAATTTTGCTTAGACAAGATATGCCATATTTGCAAGATGGAAGACCTGTTGATATGATCTTTAACCCACTAGGAGTACCTTCACGAATGAATGTAGGACAGATATTTGAATGTTCGCTCGGGTTAGCGGGGAGTCTGCTAGATAGACATTATCGAATAGCACCTTTTGATGAGAGATATGAGCAAGAGGCTTCGAGAAAACTGGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAATCCGTGGGTATTTGAACCCGAGTATCCGGGAAAGAGTCGAATATTTGATGGAAGAACGGGAGATCCTTTTGAACAACCCGTTATAATAGGAAATCCTTATATATTGAAATTAATTCATCAAGTTGATGATAAAATTCATGGACGTTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTCGAGGAAGAGCCAAGCAAGGAGGACAGCGGGTAGGAGAAATGGAGGTTTGGGCTCTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCAGATCATATTAAAGCTCGCCAGGAAGTACTTGGTACTACGATCATTGGGGGAACAATACCTAACCCTGAAGATGCTCCAGAATCTTTTCGACTGCTCGTCCGAGAACTACGATCTTTGGCTCTGGAACTGAATCATTTCCTTGTATCTGAGAGGAATTTCCAGATTAATAGGATGGAAGCTTAA

Protein sequence

MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQFGLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGPWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEFLTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQIPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIHVYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRELRSLALELNHFLVSERNFQINRMEA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17923.1Spo17923.1mRNA


Homology
[Close]
BLAST of Spo17923.1 vs. NCBI nr
Match: gi|11497516|ref|NP_054924.1| (RNA polymerase beta subunit [Spinacia oleracea])

HSP 1 Score: 1623.2 bits (4202), Expect = 0.000e+0
Identity = 805/805 (100.00%), Postives = 805/805 (100.00%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF
Sbjct: 266  MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
            PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF
Sbjct: 446  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT
Sbjct: 506  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ
Sbjct: 566  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS
Sbjct: 626  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
            MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH
Sbjct: 746  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ
Sbjct: 806  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHFLVSERNFQINRMEA
Sbjct: 1046 LRSLALELNHFLVSERNFQINRMEA 1070
[Close]
BLAST of Spo17923.1 vs. NCBI nr
Match: gi|628819100|gb|AHY80533.1| (RNA polymerase beta subunit (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 1601.6 bits (4146), Expect = 0.000e+0
Identity = 794/805 (98.63%), Postives = 800/805 (99.38%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRLNL+IP+NNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  MNRRLNLNIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLENVVRGTI GAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENVVRGTIGGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
            PWGSLESPYYEISER+KRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF
Sbjct: 446  PWGSLESPYYEISERAKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT
Sbjct: 506  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQVALDSGVLAIAEHEGKIIYTNTDKIVL GNGNT+SIPLVMYQRSNKNTCMHQKPQ
Sbjct: 566  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLSGNGNTLSIPLVMYQRSNKNTCMHQKPQ 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            I R KCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS
Sbjct: 626  ISRDKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
            MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH
Sbjct: 746  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYISQKREIKVGDKVAGRHGNKGIIS+IL RQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ
Sbjct: 806  VYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHFLVSERNFQINRMEA
Sbjct: 1046 LRSLALELNHFLVSERNFQINRMEA 1070
[Close]
BLAST of Spo17923.1 vs. NCBI nr
Match: gi|1020267076|gb|AMZ03427.1| (RNA polymerase beta subunit (chloroplast) [Bienertia sinuspersici])

HSP 1 Score: 1585.5 bits (4104), Expect = 0.000e+0
Identity = 784/805 (97.39%), Postives = 798/805 (99.13%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRLNLDIP+NNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  MNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLEN VRGTI GAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENAVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
            P GSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF
Sbjct: 446  PLGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT
Sbjct: 506  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQVALDSGVLAI+EHEGKIIYTNTDKI+L GNGNT+SIPLV+YQRSNKNTCMHQKP+
Sbjct: 566  GLERQVALDSGVLAISEHEGKIIYTNTDKILLSGNGNTLSIPLVIYQRSNKNTCMHQKPR 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            IP+GKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYE+I+TS
Sbjct: 626  IPQGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYENIFTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQTYVTSQGPEKVT EIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTYVTSQGPEKVTREIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
            MAKESSYAPEDRLLRAILGIQ+STSKETCLKLPIGGRGRVIDVRWIQK+GGSSYNPE IH
Sbjct: 746  MAKESSYAPEDRLLRAILGIQISTSKETCLKLPIGGRGRVIDVRWIQKRGGSSYNPERIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYISQKREIKVGDKVAGRHGNKGIISRIL RQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ
Sbjct: 806  VYISQKREIKVGDKVAGRHGNKGIISRILPRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPE+APESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPENAPESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHFLVSE+NFQINRMEA
Sbjct: 1046 LRSLALELNHFLVSEKNFQINRMEA 1070
[Close]
BLAST of Spo17923.1 vs. NCBI nr
Match: gi|910354309|ref|YP_009160794.1| (RNA polymerase beta subunit (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 1580.8 bits (4092), Expect = 0.000e+0
Identity = 781/805 (97.02%), Postives = 795/805 (98.76%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRL LDIP+NNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  MNRRLKLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLENVVRGTI GAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENVVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
            PWGSLESPYYEISERSKRVQ+LYLSPSRDEYYMLASGN LALNQGIQEEQVVPARYRQEF
Sbjct: 446  PWGSLESPYYEISERSKRVQILYLSPSRDEYYMLASGNPLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LT+AWEQVH RSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT
Sbjct: 506  LTVAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQVALDSGVLAIAEHEGKIIYTNTDKI+L GNGNT+SIPLVMYQRSNKNTCMHQKP+
Sbjct: 566  GLERQVALDSGVLAIAEHEGKIIYTNTDKIILSGNGNTLSIPLVMYQRSNKNTCMHQKPR 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            IP+G+CVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS
Sbjct: 626  IPQGQCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQTYVTSQGPEK+TSEIPHLEAHLLRNL+KNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTYVTSQGPEKITSEIPHLEAHLLRNLNKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
             AKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH
Sbjct: 746  TAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYI QKREIKVGDKVAGRHGNKGIISRIL RQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ
Sbjct: 806  VYILQKREIKVGDKVAGRHGNKGIISRILPRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            +FECSLGL+GSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  LFECSLGLSGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGD FEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDLFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDA ESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDATESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHFLVSE+NFQINRMEA
Sbjct: 1046 LRSLALELNHFLVSEKNFQINRMEA 1070
[Close]
BLAST of Spo17923.1 vs. NCBI nr
Match: gi|836613822|ref|YP_009143631.1| (RNA polymerase beta subunit (chloroplast) [Salicornia brachiata])

HSP 1 Score: 1580.1 bits (4090), Expect = 0.000e+0
Identity = 782/804 (97.26%), Postives = 795/804 (98.88%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRLNLDIP+NNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  MNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLEN VRGTI GAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENAVRGTIGGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
             WGSLESPYYEISERSKRVQMLYLSPS+DEYYMLASGNSLALNQGIQEEQVVPARYRQEF
Sbjct: 446  LWGSLESPYYEISERSKRVQMLYLSPSKDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS+SEKCIVGT
Sbjct: 506  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSKSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQVALDSGVLAIAEHEGKIIYTNTDKI+L GNGNT+SIPLV+YQRSNKNTCMHQKP+
Sbjct: 566  GLERQVALDSGVLAIAEHEGKIIYTNTDKILLSGNGNTLSIPLVIYQRSNKNTCMHQKPR 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            I +GKCVKKGQILADGAATVGGELALGKN++VAYMPWEGYNFEDAVLISERLVYEDIYTS
Sbjct: 626  ILQGKCVKKGQILADGAATVGGELALGKNLVVAYMPWEGYNFEDAVLISERLVYEDIYTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
            MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH
Sbjct: 746  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYISQKREIKVGDKVAGRHGNKGIISRIL RQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ
Sbjct: 806  VYISQKREIKVGDKVAGRHGNKGIISRILPRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            +FECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  LFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGD FEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDAFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIP PE APESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPKPEGAPESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRME 805
            LRSLALELNHFLVSE+NFQINRME
Sbjct: 1046 LRSLALELNHFLVSEKNFQINRME 1069
[Close]
BLAST of Spo17923.1 vs. UniProtKB/TrEMBL
Match: A0A023ZPQ8_BETVU (DNA-directed RNA polymerase subunit beta OS=Beta vulgaris subsp. vulgaris GN=rpoB PE=3 SV=1)

HSP 1 Score: 1601.6 bits (4146), Expect = 0.000e+0
Identity = 794/805 (98.63%), Postives = 800/805 (99.38%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRLNL+IP+NNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  MNRRLNLNIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLENVVRGTI GAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENVVRGTIGGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
            PWGSLESPYYEISER+KRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF
Sbjct: 446  PWGSLESPYYEISERAKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT
Sbjct: 506  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQVALDSGVLAIAEHEGKIIYTNTDKIVL GNGNT+SIPLVMYQRSNKNTCMHQKPQ
Sbjct: 566  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLSGNGNTLSIPLVMYQRSNKNTCMHQKPQ 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            I R KCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS
Sbjct: 626  ISRDKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
            MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH
Sbjct: 746  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYISQKREIKVGDKVAGRHGNKGIIS+IL RQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ
Sbjct: 806  VYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHFLVSERNFQINRMEA
Sbjct: 1046 LRSLALELNHFLVSERNFQINRMEA 1070
[Close]
BLAST of Spo17923.1 vs. UniProtKB/TrEMBL
Match: A0A159ZR82_9CARY (RNA polymerase beta subunit OS=Bienertia sinuspersici GN=rpoB PE=4 SV=1)

HSP 1 Score: 1585.5 bits (4104), Expect = 0.000e+0
Identity = 784/805 (97.39%), Postives = 798/805 (99.13%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRLNLDIP+NNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  MNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLEN VRGTI GAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENAVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
            P GSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF
Sbjct: 446  PLGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT
Sbjct: 506  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQVALDSGVLAI+EHEGKIIYTNTDKI+L GNGNT+SIPLV+YQRSNKNTCMHQKP+
Sbjct: 566  GLERQVALDSGVLAISEHEGKIIYTNTDKILLSGNGNTLSIPLVIYQRSNKNTCMHQKPR 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            IP+GKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYE+I+TS
Sbjct: 626  IPQGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYENIFTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQTYVTSQGPEKVT EIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTYVTSQGPEKVTREIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
            MAKESSYAPEDRLLRAILGIQ+STSKETCLKLPIGGRGRVIDVRWIQK+GGSSYNPE IH
Sbjct: 746  MAKESSYAPEDRLLRAILGIQISTSKETCLKLPIGGRGRVIDVRWIQKRGGSSYNPERIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYISQKREIKVGDKVAGRHGNKGIISRIL RQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ
Sbjct: 806  VYISQKREIKVGDKVAGRHGNKGIISRILPRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPE+APESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPENAPESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHFLVSE+NFQINRMEA
Sbjct: 1046 LRSLALELNHFLVSEKNFQINRMEA 1070
[Close]
BLAST of Spo17923.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K9F3_9CARY (DNA-directed RNA polymerase subunit beta OS=Haloxylon persicum GN=rpoB PE=3 SV=1)

HSP 1 Score: 1580.8 bits (4092), Expect = 0.000e+0
Identity = 781/805 (97.02%), Postives = 795/805 (98.76%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRL LDIP+NNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  MNRRLKLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLENVVRGTI GAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENVVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
            PWGSLESPYYEISERSKRVQ+LYLSPSRDEYYMLASGN LALNQGIQEEQVVPARYRQEF
Sbjct: 446  PWGSLESPYYEISERSKRVQILYLSPSRDEYYMLASGNPLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LT+AWEQVH RSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT
Sbjct: 506  LTVAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQVALDSGVLAIAEHEGKIIYTNTDKI+L GNGNT+SIPLVMYQRSNKNTCMHQKP+
Sbjct: 566  GLERQVALDSGVLAIAEHEGKIIYTNTDKIILSGNGNTLSIPLVMYQRSNKNTCMHQKPR 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            IP+G+CVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS
Sbjct: 626  IPQGQCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQTYVTSQGPEK+TSEIPHLEAHLLRNL+KNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTYVTSQGPEKITSEIPHLEAHLLRNLNKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
             AKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH
Sbjct: 746  TAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYI QKREIKVGDKVAGRHGNKGIISRIL RQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ
Sbjct: 806  VYILQKREIKVGDKVAGRHGNKGIISRILPRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            +FECSLGL+GSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  LFECSLGLSGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGD FEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDLFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDA ESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDATESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHFLVSE+NFQINRMEA
Sbjct: 1046 LRSLALELNHFLVSEKNFQINRMEA 1070
[Close]
BLAST of Spo17923.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K994_9CARY (DNA-directed RNA polymerase subunit beta OS=Haloxylon ammodendron GN=rpoB PE=3 SV=1)

HSP 1 Score: 1580.8 bits (4092), Expect = 0.000e+0
Identity = 781/805 (97.02%), Postives = 795/805 (98.76%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRL LDIP+NNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  MNRRLKLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLENVVRGTI GAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENVVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
            PWGSLESPYYEISERSKRVQ+LYLSPSRDEYYMLASGN LALNQGIQEEQVVPARYRQEF
Sbjct: 446  PWGSLESPYYEISERSKRVQILYLSPSRDEYYMLASGNPLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LT+AWEQVH RSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT
Sbjct: 506  LTVAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQVALDSGVLAIAEHEGKIIYTNTDKI+L GNGNT+SIPLVMYQRSNKNTCMHQKP+
Sbjct: 566  GLERQVALDSGVLAIAEHEGKIIYTNTDKIILSGNGNTLSIPLVMYQRSNKNTCMHQKPR 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            IP+G+CVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS
Sbjct: 626  IPQGQCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQTYVTSQGPEK+TSEIPHLEAHLLRNL+KNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTYVTSQGPEKITSEIPHLEAHLLRNLNKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
             AKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH
Sbjct: 746  TAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYI QKREIKVGDKVAGRHGNKGIISRIL RQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ
Sbjct: 806  VYILQKREIKVGDKVAGRHGNKGIISRILPRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            +FECSLGL+GSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  LFECSLGLSGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGD FEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDLFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDA ESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDATESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHFLVSE+NFQINRMEA
Sbjct: 1046 LRSLALELNHFLVSEKNFQINRMEA 1070
[Close]
BLAST of Spo17923.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXB4_SALEU (DNA-directed RNA polymerase subunit beta OS=Salicornia europaea GN=rpoB PE=3 SV=1)

HSP 1 Score: 1580.1 bits (4090), Expect = 0.000e+0
Identity = 782/804 (97.26%), Postives = 795/804 (98.88%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRLNLDIP+NNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  MNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLEN VRGTI GAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENAVRGTIGGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
             WGSLESPYYEISERSKRVQMLYLSPS+DEYYMLASGNSLALNQGIQEEQVVPARYRQEF
Sbjct: 446  LWGSLESPYYEISERSKRVQMLYLSPSKDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS+SEKCIVGT
Sbjct: 506  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSKSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQVALDSGVLAIAEHEGKIIYTNTDKI+L GNGNT+SIPLV+YQRSNKNTCMHQKP+
Sbjct: 566  GLERQVALDSGVLAIAEHEGKIIYTNTDKILLSGNGNTLSIPLVIYQRSNKNTCMHQKPR 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            I +GKCVKKGQILADGAATVGGELALGKN++VAYMPWEGYNFEDAVLISERLVYEDIYTS
Sbjct: 626  ILQGKCVKKGQILADGAATVGGELALGKNLVVAYMPWEGYNFEDAVLISERLVYEDIYTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
            MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH
Sbjct: 746  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYISQKREIKVGDKVAGRHGNKGIISRIL RQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ
Sbjct: 806  VYISQKREIKVGDKVAGRHGNKGIISRILPRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            +FECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  LFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGD FEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDAFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIP PE APESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPKPEGAPESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRME 805
            LRSLALELNHFLVSE+NFQINRME
Sbjct: 1046 LRSLALELNHFLVSEKNFQINRME 1069
[Close]
BLAST of Spo17923.1 vs. ExPASy Swiss-Prot
Match: RPOB_SPIOL (DNA-directed RNA polymerase subunit beta OS=Spinacia oleracea GN=rpoB PE=3 SV=1)

HSP 1 Score: 1623.2 bits (4202), Expect = 0.000e+0
Identity = 805/805 (100.00%), Postives = 805/805 (100.00%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF
Sbjct: 266  MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
            PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF
Sbjct: 446  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT
Sbjct: 506  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ
Sbjct: 566  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS
Sbjct: 626  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
            MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH
Sbjct: 746  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ
Sbjct: 806  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHFLVSERNFQINRMEA
Sbjct: 1046 LRSLALELNHFLVSERNFQINRMEA 1070
[Close]
BLAST of Spo17923.1 vs. ExPASy Swiss-Prot
Match: RPOB_SILLA (DNA-directed RNA polymerase subunit beta OS=Silene latifolia GN=rpoB PE=3 SV=1)

HSP 1 Score: 1541.9 bits (3991), Expect = 0.000e+0
Identity = 757/805 (94.04%), Postives = 784/805 (97.39%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRLNLDIP+NNTFLLPRDILAA DHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  MNRRLNLDIPQNNTFLLPRDILAATDHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLENVVRGTI GAIRHKLIPTPQNLVTSTPLTTT+ESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENVVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
              GSLESP+Y+ISERS  VQML+LSPS DEYYM+++GNSLALNQGIQEEQVVPARYRQEF
Sbjct: 446  LLGSLESPFYKISERSAMVQMLFLSPSIDEYYMVSTGNSLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LTIAWEQVH RSIF FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT
Sbjct: 506  LTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQ ALDSG+LAIAEHEGKI+YT+TDKI+  GNG+  SIPLVMYQRSNKNTCMHQ P+
Sbjct: 566  GLERQAALDSGILAIAEHEGKILYTDTDKIIFSGNGDIQSIPLVMYQRSNKNTCMHQNPR 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            IPRGKC+KKGQILADGAATVGGELALGKN+LVAYMPWEGYNFEDAVLISERLVYEDIYTS
Sbjct: 626  IPRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFEDAVLISERLVYEDIYTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKY+IQTYVTSQGPE+VTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYDIQTYVTSQGPERVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
            MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH
Sbjct: 746  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYI QKREIKVGDKVAGRHGNKGIIS+IL RQDMPYLQDGRPVDM+FNPLGVPSRMNVGQ
Sbjct: 806  VYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            IFECSLGLAG LLDRHYRIAPFDERYEQEASRKLVFSELY+ASKQT+ PW+FEPEYPGKS
Sbjct: 866  IFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSEPWIFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGD FEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDLFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHIKARQ+VLGTTIIGGTIPNPEDAPESFRLL+RE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQDVLGTTIIGGTIPNPEDAPESFRLLIRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHFLVSE+ FQINRMEA
Sbjct: 1046 LRSLALELNHFLVSEKTFQINRMEA 1070
[Close]
BLAST of Spo17923.1 vs. ExPASy Swiss-Prot
Match: RPOB_PANGI (DNA-directed RNA polymerase subunit beta OS=Panax ginseng GN=rpoB PE=3 SV=1)

HSP 1 Score: 1539.2 bits (3984), Expect = 0.000e+0
Identity = 755/805 (93.79%), Postives = 782/805 (97.14%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRLNLDI +NNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 267  MNRRLNLDISQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 326

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLENVVRGTI GA+RHKLIPTPQNLVTSTPLTTT+ESFFGLHPLSQVLDRTNPLT
Sbjct: 327  GLALVRLENVVRGTICGALRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLT 386

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 387  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 446

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
             WGSLESP+YEISERSK  +MLYLSP +DEYYM+A+GNSLALNQGIQEEQVVPARYRQEF
Sbjct: 447  RWGSLESPFYEISERSKGARMLYLSPGKDEYYMVAAGNSLALNQGIQEEQVVPARYRQEF 506

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LTIAWEQVH RSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS+SEKCIVGT
Sbjct: 507  LTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 566

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQ A+DSG LAIAEHEGKIIYT+TDKI+L GNGNT+SIPLV+YQRSNKNTCMHQKPQ
Sbjct: 567  GLERQAAIDSGALAIAEHEGKIIYTDTDKILLSGNGNTLSIPLVIYQRSNKNTCMHQKPQ 626

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            + RGKC+KKGQILA GAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS
Sbjct: 627  VQRGKCIKKGQILAHGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 686

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEI+T+VTSQGPE+VT+EIPHLEAHLLRNLDKNGIV LGSWVETGDILVGKLTPQ
Sbjct: 687  FHIRKYEIKTHVTSQGPERVTNEIPHLEAHLLRNLDKNGIVMLGSWVETGDILVGKLTPQ 746

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
            M KESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQK+GGSSYNPE I 
Sbjct: 747  MVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKRGGSSYNPEMIR 806

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYISQKREIKVGDKVAGRHGNKGIIS+IL RQDMPYLQDGRPVDM+FNPLGVP RMNVGQ
Sbjct: 807  VYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPPRMNVGQ 866

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            IFECSLGLAG LLDRHYRIAPFDERYEQEASRKLVFSELYEA KQTANPWVFEPEYPGKS
Sbjct: 867  IFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEAGKQTANPWVFEPEYPGKS 926

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGDPFEQPVIIG PYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 927  RIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 986

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHI+ARQEVLGTTIIGGTIPNP+DAPESFRLLVRE
Sbjct: 987  GEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPNPQDAPESFRLLVRE 1046

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHF VSE+NFQINR EA
Sbjct: 1047 LRSLALELNHFFVSEKNFQINRKEA 1071
[Close]
BLAST of Spo17923.1 vs. ExPASy Swiss-Prot
Match: RPOB_VITVI (DNA-directed RNA polymerase subunit beta OS=Vitis vinifera GN=rpoB PE=3 SV=1)

HSP 1 Score: 1538.1 bits (3981), Expect = 0.000e+0
Identity = 755/805 (93.79%), Postives = 785/805 (97.52%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            +NRRLNLDIP+NNTFLLP+DILAAADHLIGMKFGMG LDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  INRRLNLDIPQNNTFLLPQDILAAADHLIGMKFGMGILDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLAL+RLENVVRGTI GAIRHKLIPTPQNLVTSTP+TTT+ESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALIRLENVVRGTICGAIRHKLIPTPQNLVTSTPVTTTYESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRK SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEF 240
             WGSLESP+YEISERSK+V+MLYLSPSRDEYYM+A+GNSLALNQGIQEEQVVPARYRQEF
Sbjct: 446  HWGSLESPFYEISERSKKVRMLYLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARYRQEF 505

Query: 241  LTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 300
            LTIAWEQVH RSIF FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS+SEKCIVGT
Sbjct: 506  LTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 565

Query: 301  GLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQ 360
            GLERQ ALDSGV  IAEHEGKI+YT+TDKI+L GNG+T+SIPLVMYQRSNKNTCMHQK Q
Sbjct: 566  GLERQAALDSGVPVIAEHEGKIVYTDTDKIILSGNGDTLSIPLVMYQRSNKNTCMHQKAQ 625

Query: 361  IPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTS 420
            + RGKC+KKGQILADGAATVGGELALGKNVLVAYMPWEGYN EDAVLISERLVY DIYTS
Sbjct: 626  VRRGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYGDIYTS 685

Query: 421  FHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQ 480
            FHIRKYEIQT+VTSQGPE++T++IPHLEAHLLRNLDKNGIV LGSWVETGDILVGKLTPQ
Sbjct: 686  FHIRKYEIQTHVTSQGPERITNKIPHLEAHLLRNLDKNGIVILGSWVETGDILVGKLTPQ 745

Query: 481  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 540
            MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETI 
Sbjct: 746  MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIR 805

Query: 541  VYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQ 600
            VYISQKREIKVGDKVAGRHGNKGIIS+IL RQDMPYLQDGRPVDM+FNPLGVPSRMNVGQ
Sbjct: 806  VYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQ 865

Query: 601  IFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 660
            IFECSLGLAG LLDRHYRIAPFDE+YEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS
Sbjct: 866  IFECSLGLAGGLLDRHYRIAPFDEKYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKS 925

Query: 661  RIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 720
            RIFDGRTGDPFEQPVIIG PYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV
Sbjct: 926  RIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRV 985

Query: 721  GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 780
            GEMEVWALEGFGVAHILQEMLTYKSDHI+ARQEVLGTTIIGGTIPNPEDAPESFRLLVRE
Sbjct: 986  GEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPNPEDAPESFRLLVRE 1045

Query: 781  LRSLALELNHFLVSERNFQINRMEA 806
            LRSLALELNHFLVSE+NFQINR EA
Sbjct: 1046 LRSLALELNHFLVSEKNFQINRKEA 1070
[Close]
BLAST of Spo17923.1 vs. ExPASy Swiss-Prot
Match: RPOB_EUCGG (DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus GN=rpoB PE=3 SV=1)

HSP 1 Score: 1536.9 bits (3978), Expect = 0.000e+0
Identity = 757/807 (93.80%), Postives = 787/807 (97.52%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            MNRRLNLDIP+NNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQF
Sbjct: 266  MNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQF 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLALVRLENVV+GTI GAIRHKLIPTPQNLVTSTPLTTT+ESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALVRLENVVKGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 445

Query: 181  PWGSLESPYYEISERS--KRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQ 240
              GSLESP+YEISERS  K+V+MLYLSPSRDEYYM+A+GNSLALNQ IQEEQVVPARYRQ
Sbjct: 446  QGGSLESPFYEISERSKSKKVRMLYLSPSRDEYYMIAAGNSLALNQRIQEEQVVPARYRQ 505

Query: 241  EFLTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIV 300
            EFLTIAWEQV+ RSIF FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS+SEKCIV
Sbjct: 506  EFLTIAWEQVNLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIV 565

Query: 301  GTGLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQK 360
            GTGLERQ ALDSGV AIAEHEGKIIYTNTDKI+LLGNG+T+SIPLVMYQRSNKNTCMHQK
Sbjct: 566  GTGLERQAALDSGVTAIAEHEGKIIYTNTDKIILLGNGDTLSIPLVMYQRSNKNTCMHQK 625

Query: 361  PQIPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIY 420
            PQ+PRGKC+KKGQILADGAATVGGELALGKNVLVAY+PWEGYNFEDAVLISERLVYEDIY
Sbjct: 626  PQVPRGKCIKKGQILADGAATVGGELALGKNVLVAYLPWEGYNFEDAVLISERLVYEDIY 685

Query: 421  TSFHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLT 480
            TSFHIRKYEIQT+VTSQGPE++T+EIPHLEAHLLRNLDKNGIV LGSWVE GD+LVGKLT
Sbjct: 686  TSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIVMLGSWVEAGDVLVGKLT 745

Query: 481  PQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPET 540
            PQ AKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGS+YNPET
Sbjct: 746  PQTAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSNYNPET 805

Query: 541  IHVYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNV 600
            I VYI QKREIKVGDKVAGRHGNKGIIS+IL RQDMPYLQDGRPVDM+FNPLGVPSRMNV
Sbjct: 806  ICVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNV 865

Query: 601  GQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 660
            GQIFECSLGLAG LLDRHYRIAPFDERYEQEASRKLVFSELYEAS+QTANPWVFEPEYPG
Sbjct: 866  GQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEASQQTANPWVFEPEYPG 925

Query: 661  KSRIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQ 720
            KSRIFDGRTGDPFEQPVIIG PYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQ
Sbjct: 926  KSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQ 985

Query: 721  RVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLV 780
            RVGEMEVWALEGFGVAHILQEMLTYKSDHI+ARQEVLGTTIIGGTIP P+DAPESFRLLV
Sbjct: 986  RVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPKDAPESFRLLV 1045

Query: 781  RELRSLALELNHFLVSERNFQINRMEA 806
            RELRSL+LELNHFLVSE+NFQINR EA
Sbjct: 1046 RELRSLSLELNHFLVSEKNFQINRKEA 1072
[Close]
BLAST of Spo17923.1 vs. TAIR (Arabidopsis)
Match: ATCG00190.1 (RNA polymerase subunit beta)

HSP 1 Score: 1509.6 bits (3907), Expect = 0.000e+0
Identity = 738/806 (91.56%), Postives = 779/806 (96.65%), Query Frame = 1 

		  

Query: 1    MNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQF 60
            +N RLNL+IP+NN FLLPRD+LAAADHLIGMKFGMGTLDDMNHLK+KRIRSVADLLQDQ 
Sbjct: 266  INWRLNLNIPQNNIFLLPRDVLAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQL 325

Query: 61   GLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLT 120
            GLAL RLENVV+GTISGAIRHKLIPTPQNLVTSTPLTTT+ESFFGLHPLSQVLDRTNPLT
Sbjct: 326  GLALARLENVVKGTISGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLT 385

Query: 121  QIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIG 180
            QIVHGRKLSYLGPGGLTGRTA+FRIRDIHPSHYGRICPIDTSEGINVGLIGSL+IHARIG
Sbjct: 386  QIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGRICPIDTSEGINVGLIGSLSIHARIG 445

Query: 181  PWGSLESPYYEISERSK--RVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQ 240
             WGSLESP+YE+ E+SK  R++ML+LSPS+DEYYM+A+GNSLALN+GIQEEQ VPARYRQ
Sbjct: 446  DWGSLESPFYELFEKSKKARIRMLFLSPSQDEYYMIAAGNSLALNRGIQEEQAVPARYRQ 505

Query: 241  EFLTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIV 300
            EFLTIAWE+VH RSIF FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS+SEKCIV
Sbjct: 506  EFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIV 565

Query: 301  GTGLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQK 360
            GTGLERQVALDSGV AIAEHEGKI+YT+T+KIV  GNG+T+SIPL+MYQRSNKNTCMHQK
Sbjct: 566  GTGLERQVALDSGVPAIAEHEGKILYTDTEKIVFSGNGDTLSIPLIMYQRSNKNTCMHQK 625

Query: 361  PQIPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIY 420
            PQ+ RGKC+KKGQILADGAATVGGELALGKN+LVAYMPWEGYNFEDAVLISE LVY DIY
Sbjct: 626  PQVRRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFEDAVLISECLVYGDIY 685

Query: 421  TSFHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLT 480
            TSFHIRKYEIQT+VT+QGPE++T EIPHLE  LLRNLDKNGIV LGSWVETGDILVGKLT
Sbjct: 686  TSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRNLDKNGIVMLGSWVETGDILVGKLT 745

Query: 481  PQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPET 540
            PQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRW+QKKGGSSYNPE 
Sbjct: 746  PQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEI 805

Query: 541  IHVYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNV 600
            I VYISQKREIKVGDKVAGRHGNKGIIS+IL RQDMPYLQDGRPVDM+FNPLGVPSRMNV
Sbjct: 806  IRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNV 865

Query: 601  GQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 660
            GQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG
Sbjct: 866  GQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 925

Query: 661  KSRIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQ 720
            KSRIFDGRTGDPFEQPVIIG PYILKLIHQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQ
Sbjct: 926  KSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQ 985

Query: 721  RVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLV 780
            RVGEMEVWALEGFGVAHILQEMLTYKSDHI+ARQEVLGTTIIGGTIP PEDAPESFRLLV
Sbjct: 986  RVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLV 1045

Query: 781  RELRSLALELNHFLVSERNFQINRME 805
            RELRSLALELNHFLVSE+NFQINR E
Sbjct: 1046 RELRSLALELNHFLVSEKNFQINRKE 1071
[Close]
BLAST of Spo17923.1 vs. TAIR (Arabidopsis)
Match: AT4G21710.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 166.0 bits (419), Expect = 9.500e-41
Identity = 116/424 (27.36%), Postives = 186/424 (43.87%), Query Frame = 1 

		  

Query: 383  ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKY-----EIQTYVTSQGP 442
            +L  G N +VA   + GYN ED+V++++  +    + S   R Y     ++ T V     
Sbjct: 779  QLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 838

Query: 443  EKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAI 502
                     +       LD +G+   G+ V   D+++GK TP ++++ +     R  R  
Sbjct: 839  RPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQGQSSRYTRRD 898

Query: 503  LGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIHVYISQKREIKVGDKVAG 562
              I +  S+           G V  V       G  +    + V +   R  ++GDK + 
Sbjct: 899  HSISLRHSET----------GMVDQVLLTTNADGLRF----VKVRVRSVRIPQIGDKFSS 958

Query: 563  RHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQIFECSLGLAGSLLDRHY 622
            RHG KG +     ++DMP+  +G   D+I NP  +PSRM +GQ+ EC +G   + + +  
Sbjct: 959  RHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1018

Query: 623  RIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVII 682
               PF +      S+ L     ++   Q            G  R+++G TG P    + +
Sbjct: 1019 DATPFTDVTVDNISKAL-----HKCGYQMR----------GFERMYNGHTGRPLTAMIFL 1078

Query: 683  GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHIL 742
            G  Y  +L H VDDKIH R  G   ++T+QP  GR++ GG R GEME   +   G AH L
Sbjct: 1079 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL 1138

Query: 743  QEMLTYKSDHIKARQ-EVLGTTIIGGTIPNPEDA--------------PESFRLLVRELR 787
            +E L  +SD  +    EV G   I     N  +               P + +LL +EL 
Sbjct: 1139 KERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELM 1172
[Close]
BLAST of Spo17923.1 vs. TAIR (Arabidopsis)
Match: AT5G45140.1 (nuclear RNA polymerase C2)

HSP 1 Score: 151.4 bits (381), Expect = 2.400e-36
Identity = 115/419 (27.45%), Postives = 183/419 (43.68%), Query Frame = 1 

		  

Query: 383  ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEI--QTYVTSQGPEKV 442
            +L  G+N  VA M + GY+ EDA+++++  +         ++K     Q Y        +
Sbjct: 754  KLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRIL 813

Query: 443  TSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI 502
              +    +A  ++ LD +G+   G  +   DI + K  P            +   A+   
Sbjct: 814  IPQRTGPDAEKMQILDDDGLATPGEIIRPNDIYINKQVP-------VDTVTKFTSALSDS 873

Query: 503  QVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIHVYISQKREIKVGDKVAGRHG 562
            Q   ++E   K P G    V  V     K G       I   I   R  ++GDK + RHG
Sbjct: 874  QYRPAREY-FKGPEGETQVVDRVALCSDKKGQL----CIKYIIRHTRRPELGDKFSSRHG 933

Query: 563  NKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIA 622
             KG+   I+ ++D P+ + G   D+I NP G PSRM VG++ E     AG    R +  +
Sbjct: 934  QKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGS 993

Query: 623  PFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGNP 682
             F ER       + + + L E              Y GK  ++ G +G+P E  + +G  
Sbjct: 994  AFGERSGHADKVETISATLVEKGFS----------YSGKDLLYSGISGEPVEAYIFMGPI 1053

Query: 683  YILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM 742
            Y  KL H V DK+H R SG   ++T+QP  G++K GG RVGEME   L  +G + ++ E 
Sbjct: 1054 YYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYER 1113

Query: 743  LTYKSDHIKAR---------------QEVLGTTIIGGTIPNPEDAPESFRLLVRELRSL 785
            L   SD  + +               ++ + TT   G        P + +LL +EL+S+
Sbjct: 1114 LMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQELQSM 1150
[Close]
BLAST of Spo17923.1 vs. TAIR (Arabidopsis)
Match: AT3G23780.1 (nuclear RNA polymerase D2A)

HSP 1 Score: 120.6 bits (301), Expect = 4.600e-27
Identity = 93/376 (24.73%), Postives = 162/376 (43.09%), Query Frame = 1 

		  

Query: 387  GKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTYVTSQGPEKVTSEI-- 446
            G+N +VA     GYN ED++++++  +   ++ S  IR Y+ +         K   E+  
Sbjct: 769  GQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQ 828

Query: 447  ---PHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQ 506
                H +   + +L+ +G   +G+ + TGDI++G+ T   A  S                
Sbjct: 829  FGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHS---------------- 888

Query: 507  VSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIHVYISQKREIKVGDKVAGRHGN 566
                    +KL    RG V  V       G ++      V + Q R   +GDK +  HG 
Sbjct: 889  --------IKLKHTERGIVQKVVLSSNDEGKNFAA----VSLRQVRSPCLGDKFSSMHGQ 948

Query: 567  KGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQIFECSL--GLAGSLLDRHYRI 626
            KG++  +  +Q+ P+   G   D++ NP   PSR   GQ+ E +L  G+A  +       
Sbjct: 949  KGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPI------- 1008

Query: 627  APFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYP---------GKSRIFDGRTGDP 686
                    Q+      +++L   +   + P V E             G  R+++GR+G+ 
Sbjct: 1009 --------QKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEM 1068

Query: 687  FEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEG 746
                + +G  +  +L+H  +DK+  R++G    +T+QP+  R + GG + GEME   L  
Sbjct: 1069 MRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1101
[Close]
BLAST of Spo17923.1 vs. TAIR (Arabidopsis)
Match: AT3G18090.1 (nuclear RNA polymerase D2B)

HSP 1 Score: 119.8 bits (299), Expect = 7.800e-27
Identity = 92/369 (24.93%), Postives = 163/369 (44.17%), Query Frame = 1 

		  

Query: 387 GKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTYVTSQGPEKVTSEI-- 446
           G+N +VA     GYN ED++++++  +   ++ S  IR Y+ +         K   E+  
Sbjct: 651 GQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSEKRKKMDELVQ 710

Query: 447 ---PHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQ 506
               + +   + +L+ +G   +G+ + TGDI++G+ T   A  S                
Sbjct: 711 FGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHS---------------- 770

Query: 507 VSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIHVYISQKREIKVGDKVAGRHGN 566
                   +KL    RG V  V       G ++      V + Q R   +GDK +  HG 
Sbjct: 771 --------IKLKHTERGIVQKVVLSSNDEGKNFAA----VSLRQVRSPCLGDKFSSMHGQ 830

Query: 567 KGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQIFECSL--GLAGSLLDRHYRI 626
           KG++  +  +Q+ P+   G   D++ NP   PSR   GQ+ E +L  G+A  +  +    
Sbjct: 831 KGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSS 890

Query: 627 APFDE--RYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVII 686
           A + +  R+    S   V     +  +   + W       G  R+++GR+G+     + +
Sbjct: 891 AAYTKLTRHATPFSTPGVTEITEQLHRAGFSRW-------GNERVYNGRSGEMMRSLIFM 950

Query: 687 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHIL 746
           G  +  +L+H  ++K+  R++G    +T+QP+  R + GG R GEME   L   G +  L
Sbjct: 951 GPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGASANL 984
The following BLAST results are available for this feature:
BLAST of Spo17923.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|11497516|ref|NP_054924.1|0.0e+0100.RNA polymerase beta subunit [S... [more]
gi|628819100|gb|AHY80533.1|0.0e+098.6RNA polymerase beta subunit (p... [more]
gi|1020267076|gb|AMZ03427.1|0.0e+097.3RNA polymerase beta subunit (c... [more]
gi|910354309|ref|YP_009160794.1|0.0e+097.0RNA polymerase beta subunit (c... [more]
gi|836613822|ref|YP_009143631.1|0.0e+097.2RNA polymerase beta subunit (c... [more]
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BLAST of Spo17923.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A023ZPQ8_BETVU0.0e+098.6DNA-directed RNA polymerase su... [more]
A0A159ZR82_9CARY0.0e+097.3RNA polymerase beta subunit OS... [more]
A0A0K0K9F3_9CARY0.0e+097.0DNA-directed RNA polymerase su... [more]
A0A0K0K994_9CARY0.0e+097.0DNA-directed RNA polymerase su... [more]
A0A0G2QXB4_SALEU0.0e+097.2DNA-directed RNA polymerase su... [more]
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BLAST of Spo17923.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPOB_SPIOL0.0e+0100.DNA-directed RNA polymerase su... [more]
RPOB_SILLA0.0e+094.0DNA-directed RNA polymerase su... [more]
RPOB_PANGI0.0e+093.7DNA-directed RNA polymerase su... [more]
RPOB_VITVI0.0e+093.7DNA-directed RNA polymerase su... [more]
RPOB_EUCGG0.0e+093.8DNA-directed RNA polymerase su... [more]
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BLAST of Spo17923.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
ATCG00190.10.0e+091.5RNA polymerase subunit beta[more]
AT4G21710.19.5e-4127.3DNA-directed RNA polymerase fa... [more]
AT5G45140.12.4e-3627.4nuclear RNA polymerase C2[more]
AT3G23780.14.6e-2724.7nuclear RNA polymerase D2A[more]
AT3G18090.17.8e-2724.9nuclear RNA polymerase D2B[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6GENE3D2.40.270.10coord: 549..692
score: 2.2E-72coord: 384..410
score: 2.2
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6PFAMPF00562RNA_pol_Rpb2_6coord: 316..714
score: 3.7E
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 552..564
scor
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 716..791
score: 4.6
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 1..50
score: 7.2
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 111..179
score: 1.6
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 417..548
score: 3.0
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..323
score: 0.0coord: 339..797
score:
NoneNo IPR availableGENE3D2.40.50.100coord: 313..383
score: 2.2
NoneNo IPR availableGENE3D3.90.1100.10coord: 39..190
score: 2.7E-86coord: 257..311
score: 2.7
NoneNo IPR availablePANTHERPTHR20856:SF20DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 1..323
score: 0.0coord: 339..797
score:
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..796
score: 3.05E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006814 sodium ion transport
biological_process GO:0015979 photosynthesis
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006554 lysine catabolic process
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0023014 signal transduction by protein phosphorylation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0010467 gene expression
biological_process GO:0009451 RNA modification
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009987 cellular process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
cellular_component GO:0005763 mitochondrial small ribosomal subunit
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0000786 nucleosome
cellular_component GO:0009365 protein histidine kinase complex
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005730 nucleolus
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009523 photosystem II
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0000155 phosphorelay sensor kinase activity
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0005488 binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0005506 iron ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo084400.86Barchart | Table
Spo261270.86Barchart | Table
Spo094130.85Barchart | Table
Spo250040.85Barchart | Table
Spo255550.82Barchart | Table
Spo062010.82Barchart | Table
Spo042770.82Barchart | Table
Spo195600.81Barchart | Table
Spo028510.81Barchart | Table
Spo255370.81Barchart | Table
Spo247180.81Barchart | Table
Spo006260.81Barchart | Table
Spo058750.80Barchart | Table
Spo179240.80Barchart | Table
Spo255380.78Barchart | Table
Spo247080.78Barchart | Table
Spo062000.78Barchart | Table
Spo119040.77Barchart | Table
Spo247070.77Barchart | Table
Spo195610.76Barchart | Table
Spo170100.75Barchart | Table
Spo247190.75Barchart | Table
Spo164850.75Barchart | Table
Spo139590.74Barchart | Table
Spo164900.74Barchart | Table
Spo225720.73Barchart | Table
Spo261260.73Barchart | Table
Spo042780.73Barchart | Table
Spo106270.72Barchart | Table
Spo148150.72Barchart | Table
Spo179250.72Barchart | Table
Spo118740.72Barchart | Table
Spo180440.71Barchart | Table
Spo164840.70Barchart | Table
Spo148160.70Barchart | Table
Spo017480.70Barchart | Table
Spo164860.70Barchart | Table
Spo136500.69Barchart | Table
Spo054120.68Barchart | Table
Spo273570.68Barchart | Table
Spo051810.68Barchart | Table
Spo111240.68Barchart | Table
Spo247170.68Barchart | Table
Spo225730.68Barchart | Table
Spo179270.67Barchart | Table
Spo224450.67Barchart | Table
Spo040470.67Barchart | Table
Spo193360.66Barchart | Table
Spo096750.66Barchart | Table
Spo211710.65Barchart | Table
Spo190640.65Barchart | Table
Spo123620.65Barchart | Table
Spo212510.65Barchart | Table