Spo17836 (gene)

Overview
NameSpo17836
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionAP-4 complex subunit sigma
Locationchr2 : 24261916 .. 24270206 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAATCAGTATCAACACCATGGTCTAGTGCCGTTATAAAATAGAAACTCCTCTCTTCAAAAATAAAAGTTTGTGAAGTCCTGAAATTGCAATTACTGTCGCCCTCGCCCCTGCAAAACAAAAGAGCAAAAGTATCAGCTGAACCAAAATTCATTGAATTTCATCTCACAGTGGGAAGTTAGATCAAGGATCAAAAGATGACAATTAGATTCGTGTTAATGGTGAACAAACAAGGCCAAACTCGTCTAGCACAGTACTACGAGTACCTCACTATCGACCAGCGCCGTGCTCTTGAGGGTGAAATCGTCCGCAAGTGCCTCGCCCGTAACGAGCAACAGGTTTCTCTCTTTCTTTGATCTCTATCTACAATTTTAAAATCATGGATTTTCTTAGCAATCAGCAATGTATCTGCGTACCGTTGAAATCAAGCTCGTTATTTTGGGGAATTTTTGGATCAATTCGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTAGTTCTGTAACGGGTCTTAGAATTTGTCGTCAATATGAACATTGCGAGTCAAATCTGATTGTGGGTATTTTATATTTTATTGATTGTGTATGATCTTATTCCTGGGTTCCGTCGAAATTGAGCTAATTGGTTTGGGGAAAATTTGGATCAATTATGTATTTTCCCTTTCTGTATTGGATTATGCAATTTGTCATCAATATGAACAATGTTGATTGTGGGTATTTGTGGATTTGAACAGTAGATGTCCTTAGTGGGATGTATGATCTTGTTTTTGTTGCAATCAATTTTGGGTTGTTTAGGGTTTTAATCCCTTTTTCTAGAGAAATTGATGTCAGTTTAATCCATGATTGAATTGAAAGGAAAGGTTTTTATGTGAATTGTGAGTGTGATCTTGGATTATTAATGACTGGCAACAGAAATCTCTTAATTTGATAAGCTGAAGTGTGCAATTTGAGTATTTGGAGGTGCCCTAACTTTGTTTCATTCATGCGATGTGATAAATCCAGCTATCTGTCTGATTTTGTCTGTGTGAAAAGTTTGTAAATTTATGTTATTTCAATATTTTTCCATGTTTGGTGTCCCTTATCCTGCATTGTTTACATCCTAGGAAATTTTGTCAGTTTAGTTGTGATTTTGTTACGCATTAGTTTAGCTGCTGATTTTAAAAATTTTAAATTTGTTCGACAAGTGTGTTTGTATTGATTGTGCTTATCGTTTGACTCATTACTAAAAGAACATTCCTCTCTTTGGCGTGACAGTGTTCATTTGTGGAGCATCGCAATTACAAGATTGTATATAGGCGCTATGCATCACTCTTTTTCTTGGTTGGAGTTGACAATGATGAGGTGATAATTAAGCTCTTATTGTAGTCTTCATTTGGCTTGCCATGTTATTTTAAGCTGTATTCTTGAAATAGTTTATCTAGTTAGGTTTTAAACTGCTTATAGCTGTTCTCTATGTGACTGCACCAGTATGTACAGATGTATTTGCAGTTTGCACACGTGTTCACTTTTATGATAACTCTTTTGGGCGTCAGGCTTCTTATAAACCATATACCTCTGGTAGTCTGAAATCTGTTATATTTTGAAGTCGAGCTTTTTCTACTTATAAAGGGAAAAAAGGTCTTGGAACCTCATATATAGGTACTCTTAGTTATCATTTGGTCGGACATTGGAAGTTAGATTTCTTAGGCCTTTGCAAGTCTCATGGAGCCCAACTTGCTGGGAAGTTGGGAAGTGTAGAACATGTTGTTTGGTTAAGTGAAAGCAAAAGGTCTTGCGCGCACAGGGTGTACAATAAATTTATTGTACACCAAGATAACTTTTATGCAGGTTCTTATAACTTTAACCTACTTTTTTTGTAACTTTATATTATAAAAATAAAAAGTTGATAGATAAATATTTTAAAGGTTAAATGATTAATTTATACATTAATAGTTATTTTGAAAAAATAATTTTTATTCAAATGAAAAAAATTATCATTAAAAAATAGATGACATTTGTTTGTTAGGAAAAAATAATTTTTATTCAAATGAGTCAGCTAAACGACCACTTAGATTCTTATATTAGGAATACTATTCATGTTTCTTCCATCTGTTTGTTGTCAATTGCTAGGTTTTGTGTGGATTCTTATTGAGCTACAACAATAATACCCTGTGTTAATCCTGCCTTTTTTGTTCAGTAATGTGCTGTAATAAGGTGCTCTAGGTCAAAAGGGTTTCTTTCAATGTCAGTTGGGAAAAGTGGGGCAGTTGTTTAGTGATATCCTAAGTTACTTGGACTCGGGTACTAGTGTCGGACACGGGTATGTGTCCAGGTGTCCGACTCGACTATTGTGAAAAAAATTCATGATTTAAGCCGAAAATGAAGTGTCAGAGTGTCCATATCCATGTCGGAGTGTAGAGGGCCCGACACGGGTACTTGAGCTAAAATGAAGAGTCTGAGTAACATAGGTGATATCTATTGATTCCCAACAATCTTTTCTTATACATTGTTTCGAATTACATCATTTCCTCCTTTCGTTCTCCTAAAGACTATGGTTCTGTTGGGGAATGGGGGTATAGTCTCATCATTTGATGATATTTCATGTGGTACTTTAAACCAAAAGATACCAGTTGAATTGTTCTGCAGCTTACGTTTTCTATAGGTGACTGATATTTTTTCCATTAGAATGTTATTTTTTTCTGGTAAGTAAATAGTATATTACTCCAAGAAATCAATACAACCTATCCACTTTGTTATTAGAGAACAAACCTTCTAGGAAGGACCCTTCTCTGATAAAAAGTTGCGAAACTAGGCTAACAGGCCATAATACAACAATTCTAAAACTCACAACAAACAACCAAGACTAATTACAAATTTTCCATCCATGTTTTGTCAACTTGGCTGACTTTCCTTCCCATCACTCCTCTTATTCTAGCTTTAATTTCTACTTCTATGCCTTTCACTACTGTCTGAACCCTTTGAACCTTTTTCTCCCGAAGTGAATTGTTCCTTGCTTGCCAAATTGCATAGACTGTTGCTGCAATCGTAGCATAAACAAACAGTAGCTCTTCTGAACCTTGAGCCCTTATAGTCTCTACTAACCCATTCCAGGAGCTGTAGGAGATTCCTGTGAGTACCAATACCTAATATCCAATTCAGAGAATGAGTGATGCAATTCCTACTGAACTGGCATTCAAAAAATAGGTGGTTATGACTTTCATCTTGAGTACCACAGATAAGGCATTTAGCATCACTACAAATACCTCTCTTGTACAATCGATCTTTAGGTAGTGTTCTCTTTACCTGAATATCACTTATCTTATCTTATCTTATTGGCCCTGCTATCTTATTTTATCTTATCTTATTGACCTTTATCTTATCTTATCTGAACGTATTGACCCTTATCTTATCTTATTGACCCTTATTGACCCTTATCTTATCTTATCTTATCTTATTGAAACTTATAGTATTACCTTATGTAATATTTACCCCACTTTATCTTATCTTATCTTATCTTATTGGCCCTGAACTTATCTTATCTTATCTTATTGACCCTGAACTTATCTTATTTTATCTTATCTTATTGACCCTGAACTTATCTTATTGGCCCTTATTTTATCTTATTTTATCTTATCTTATCTTATCAGACCTGAAATAAGTGAAAATAAGGTGAAGAGAACAGAGCCTAAAGTCTGCAACCTTCCCTGATTAGTCAACCATTGAATAAACTTATGCTTCGGTATTGAACTTCTATTCTAGGTTGTTGCAGCCCATGGTGTTTCTTGTTCCGGACCATTAACAAGCTCGCACACCTGCATTCCAGTTACTTGGCCCATGTTGAGCTAATGCATCTTTCACTTTACACATATACTTCCACACCCAACTTGCTGCATAGGTGGAGAATAGCTCCATCAATTTGTATCTTTGACATAGACTGTGTGGACCCACTTGACCCACAGAGTATCCTTCATTCCTTCTTCTCTGCTATTTGCCAGACAGACTTGCCAACTAATGCTTTATTCCATAAGTTTATATTCTTATGCTCCAATCCGCCACTTCCCTTTGAGCTGCAAACTTTGTCCCAGTTTTACATGTTCAGGTTTGCTGCTATCAAGTGTACCTTGCCACAAATAGCTCCTGCAGATGTTGTTTATTTTCTGAATTACCACTTTAGGAAGAATAAAAATTTGGGTCAAGGTGTAAATGCTCATTAAAACAACATTCACTAATTGGAGTCTTCCAGCATAGGAAATGTTCCTTGTGCTCAAATCCTTATCTTGGAAACCATCTTCTCAACTAAGGCTTCACAATCACTTGCTTTGAGTTTATTTGCACTAATGGGAACCCCGAGATATTTAAGAGGGAGAATACCCACTTTGAAACCATTGATGTTGCTCAAATGTTGTATATCTTCCTCATTCATACCTGTTTGATAATTTTCAGTTTTGTTCTTACAATTGAATTCCTTGCATCAGTAGATAAGAAGACTTGAAATCCCCTTTACTGAATACTAGCAGATCATCAGCAAAACAGAGATTATACCGGTTCATTTGCTTGCATCTTGGGTGGAACCTAAAGTCTTTTTTGCTCCCTACATACTTCAGTATTCTTGTCAAATACTCCATGCAAATGACAAAAAGCAGGGGAGACAAAGGGTCTCCTTGCCCAAGGCCCCTTTTTGCTGGGAAGTAACCCTGATTACCGCCATTAAGCATGAGTGTATACATCGGGGAAGAGACACAGACCATCACAGTCCGTATGAAATTTTCGGGAAAGTTCAAAGCCCGCTTCATTTCCTCCAAGAAGCTCCATTCTACTGTATCGTATGCCTTTCTGAGGTCTATCTTTATCATACACCTGTTTTGGGTCTGTTTTCTTCAGTAGTGCCTCACTAGGTCTTGACAAACTAACACATTGTGAATTATGCTCCTGCTTGCAACAAATGCTCCTTGATTCTGTGAAATTATCCCAGGGAGGACCCTCTTCAATTGTGAGCATATGAGCTTTGTGATTGTTTTATAGAGCATGTACAACATGCTATGGGCCTATAATCCCCCACTACACTTGGGCATTTAACCTTTTGAACCATTGTGAGAGACGTTGTATTAATTGCATTCAACAACTTTCCATTCTCGAAAATTTGCAAAACAGCCTTTGTTGTGTCTGTTCCAGTGATTTCCCATGTTGCCTTGAAAAAACCACTCCCATATCCATCTATTCCAGGAGATTTGTCTTCCGGAATAGAAAAAAGGGCCTGCTTGACTTCTGCATCGGAGAATTTAAGGTCAAGTAAATTGTGATGTACACCACTGATTTTAGGTCCCAGATGGACAATCTTGCGTATTACCTTCCTCCTGTTTGTGACTGAACTTCCCAGGAAACCTTTGAAGTAATCAACGAATATTTCATTTACTAACTTGACATCAGTCGCCCAATTACCTTGCTCATCAAGTACTGCATTAATCTTGTTACTACACCTCCTAGCTTTAATGCTTGAAACAGCTGAGAATTCTCATCCCCTGTTCTTAGCCAATTGAGCTTTGCTTTTTGACTCAAGTAGGAGAGATAGTTAGTGTGAGCTTGCTTATTCACCTCACTTGCTTCAAATTCCTTTTGTGCCGCTGCAACATCCCCAGGCTTCTCATGAACACCATTTTGAGCCTCGAGCAAATCCCGATATGCTTTAGCATCAGTTGCGTGAACATCTCCAAATCCTTGCTGATTAAGTTGCTTCAAATCTTTCTTGAGAGGTTTCATTTTCTGTATCACCTGGAACATCTTTTATCCTTTTATATCTATAACCCAACTTTTCTGCACAATGTTGATAAACTCAGGAGCATTCTCCCACATTTTAAAGAACCTAAACGGCTTTTTTCCTTGATTTTGATTACGAAAATACCTAATCGGTGCTGGAGTATGGTCAAATGTACCCTCGGGTAAGAAAAGAGTCTCAGCATTTGGATAGTAGTCACACCACTCATCATTCACTAAGACTCTTATCTATTTTTGTCATTACCCTATCTGCACCTTGTTGCTTGTTATTCCATGTGAAAAATCTCCCTTGTTCTTCATATCCTCTACTTCACAATGCTGTACACATTGTTTGAACGGTGCAACTTCAGAATTCCTCACTACACTGCCTATTCTTTCTTCACAATTAAGAACAGTGTTAAAGTCCCATAGCATAACCCAAGGCCCTATCTCTTTATCCGCAAGCCCCTGTAAGTATCTCCAAAGACTTTCTCTTCCTTGTCTACATTAAAAGCATAGACAAAGGTGCACCAGAATTTGTCCCCCATCTTAACAGAACTAACTTTGCAATGAATCAATTGTGCAGTGCAACGCATTATGGTCCATTAGAATGTTGACTGTTGAGGATAGCAGTGATTTATGGTGTGCTGTAAATTTGCTTTTTGCTCAGATAGTTACTGTTACCAGTTGCGAAAGACGGGTTGTTGGTGTTTCTTCTCATCCATTGAACATTTAATATGCGTTGTTCTAAAACTTCTAATATTTTTACAAACTCCAATTCTCCATATTATCTCCTTTTCTATTTCCTTAATTTTCAATAGTTGATTAGTAATGGGTATTTTAAGGCTGCAGTGCTTGCTTCATACGGAGTATCATGTAATGATGTAAAAATGCTACTCTCAAACAAATCCCTTTCACCCAAGCCTTTTCAATATTGTTTTGGGTTTTCAGGAAAACAGATTTTTTTAAACTGAAAAAGGTAGTTTCTTGTGTTTTGTTGTCAGTCTTTAAAATAAACATGATTAGTATTGTTCAAGTTTGTCATGTACCCTGTGTCACATAACATTCAAAATCAAGCCGGGGGTGATACTGAATATGCCCTAAATATAGTAGGTATTTCTTTTGTGTTTAGTATTTGTATGTTTTGACGATTCTTCAATCGGAGGGCTTGAAAATAGCAGGGATTGTATGTATTGGTATTATGTGGTGATCATGTGCTTTATGCTGAAATAATTCCCCATTCCCTGCAACATTCATTGTTGAAGATGTGCAGTTGAGGTTCTTCTCATCTACGGACATCTCAACAATCATGCCCCCCTATATTTATCCGTCCTCATTTTCATCTCTGTTTTTCCTTCACTTTCAAACATAATGAGTCTATTACCTTTTACCCCACCTGTCACATTAGCATGGAATACATGTATAAAAGGGTTTCTGATCATGTGTGATTTTTCTTGTGTATACTATACATAATATTACATACTAGTGGCGTTTAAACACCGCAGCTTCAAATATTAGAAAATTTCATTTTGTTTTGATGGAAATGTTCTGCGTTACAGATCCTTTGTGCATATTTCAACTCTTGTCAACCTCTACATTATTTGATTTGAAGGTTCTGTTATTTCTATATAACCGTTGTTTAAATTATGCAGAATGAGCTTGCAATTCTGGAGTTCATACATTTGTTGGTAGAGACTATGGATCGACACTTTGGCAATGTGGTGAGTGTCATTAACTCCCTTGCATATGTTTTTCCATCTTAAAACTTATTTCATCATAAGATCTCTATTCTTAAGTTTGATTGCAAACACAGTGTGAGCTGGATATTATGTTCCATCTGGAGAAAGCACATTTCATGTTGGAGGAAATGGTGATGAATGGATGCATCGTCGAGACCAACAAGTCTAACATCTTGGCCCCTATTCAATTGATGGATAAAGCATCTTGATTATCTACCTTTTTAGGCAATGTATTGTATATGTTAACATTCTTGTTTTAGTCGAATGGACAAATCGAGGACACCACTGTTTTTCTCTCTCTCAATTGTATGTTTAACATTAAAATTGTTACTAAGCCTATTTTATTTTGAAGAATGTAAGACGAAACGTTCCTTTTTGTGGAATCGCTGTAATTTTGTCATCAATATGAGATAAGATGTGAAGCCAAGTGTTCTTCTTTCAAAATTTAGGAAGTCTGCAATTTTTAGTATCATTGAAATGTATTAATTTCCATAACTATCCTGA

mRNA sequence

TGAATCAGTATCAACACCATGGTCTAGTGCCGTTATAAAATAGAAACTCCTCTCTTCAAAAATAAAAGTTTGTGAAGTCCTGAAATTGCAATTACTGTCGCCCTCGCCCCTGCAAAACAAAAGAGCAAAAGTATCAGCTGAACCAAAATTCATTGAATTTCATCTCACAGTGGGAAGTTAGATCAAGGATCAAAAGATGACAATTAGATTCGTGTTAATGGTGAACAAACAAGGCCAAACTCGTCTAGCACAGTACTACGAGTACCTCACTATCGACCAGCGCCGTGCTCTTGAGGGTGAAATCGTCCGCAAGTGCCTCGCCCGTAACGAGCAACAGTGTTCATTTGTGGAGCATCGCAATTACAAGATTGTATATAGGCGCTATGCATCACTCTTTTTCTTGGTTGGAGTTGACAATGATGAGAATGAGCTTGCAATTCTGGAGTTCATACATTTGTTGGTAGAGACTATGGATCGACACTTTGGCAATGTGTGTGAGCTGGATATTATGTTCCATCTGGAGAAAGCACATTTCATGTTGGAGGAAATGGTGATGAATGGATGCATCGTCGAGACCAACAAGTCTAACATCTTGGCCCCTATTCAATTGATGGATAAAGCATCTTGATTATCTACCTTTTTAGGCAATGTATTGTATATGTTAACATTCTTGTTTTAGTCGAATGGACAAATCGAGGACACCACTGTTTTTCTCTCTCTCAATTGTATGTTTAACATTAAAATTGTTACTAAGCCTATTTTATTTTGAAGAATGTAAGACGAAACGTTCCTTTTTGTGGAATCGCTGTAATTTTGTCATCAATATGAGATAAGATGTGAAGCCAAGTGTTCTTCTTTCAAAATTTAGGAAGTCTGCAATTTTTAGTATCATTGAAATGTATTAATTTCCATAACTATCCTGA

Coding sequence (CDS)

ATGACAATTAGATTCGTGTTAATGGTGAACAAACAAGGCCAAACTCGTCTAGCACAGTACTACGAGTACCTCACTATCGACCAGCGCCGTGCTCTTGAGGGTGAAATCGTCCGCAAGTGCCTCGCCCGTAACGAGCAACAGTGTTCATTTGTGGAGCATCGCAATTACAAGATTGTATATAGGCGCTATGCATCACTCTTTTTCTTGGTTGGAGTTGACAATGATGAGAATGAGCTTGCAATTCTGGAGTTCATACATTTGTTGGTAGAGACTATGGATCGACACTTTGGCAATGTGTGTGAGCTGGATATTATGTTCCATCTGGAGAAAGCACATTTCATGTTGGAGGAAATGGTGATGAATGGATGCATCGTCGAGACCAACAAGTCTAACATCTTGGCCCCTATTCAATTGATGGATAAAGCATCTTGA

Protein sequence

MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETNKSNILAPIQLMDKAS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17836.1Spo17836.1mRNA


Homology
[Close]
BLAST of Spo17836.1 vs. NCBI nr
Match: gi|731354058|ref|XP_010688379.1| (PREDICTED: AP-4 complex subunit sigma [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 284.6 bits (727), Expect = 9.200e-74
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           MTIRFVLMVNKQGQTRLAQYYEYLTI+QRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIEQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCI+ETNKSNILAPIQLMDKAS
Sbjct: 121 NGCIIETNKSNILAPIQLMDKAS 143
[Close]
BLAST of Spo17836.1 vs. NCBI nr
Match: gi|703063205|ref|XP_010086907.1| (AP-4 complex subunit sigma [Morus notabilis])

HSP 1 Score: 276.6 bits (706), Expect = 2.500e-71
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRF+LMVNKQGQTRLAQYYEYLTI++RRALEGEIVRKCLAR EQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTIEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVET+KSNILAPIQLMDKAS
Sbjct: 121 NGCIVETSKSNILAPIQLMDKAS 143
[Close]
BLAST of Spo17836.1 vs. NCBI nr
Match: gi|950931194|ref|XP_014506371.1| (PREDICTED: AP-4 complex subunit sigma [Vigna radiata var. radiata])

HSP 1 Score: 275.4 bits (703), Expect = 5.600e-71
Identity = 136/143 (95.10%), Postives = 140/143 (97.90%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVETNKSNIL PIQLMDK S
Sbjct: 121 NGCIVETNKSNILTPIQLMDKTS 143
[Close]
BLAST of Spo17836.1 vs. NCBI nr
Match: gi|1009162536|ref|XP_015899491.1| (PREDICTED: AP-4 complex subunit sigma [Ziziphus jujuba])

HSP 1 Score: 275.4 bits (703), Expect = 5.600e-71
Identity = 135/143 (94.41%), Postives = 142/143 (99.30%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRF+LMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDN+ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNEENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVET+KSNILAPIQLMDK+S
Sbjct: 121 NGCIVETSKSNILAPIQLMDKSS 143
[Close]
BLAST of Spo17836.1 vs. NCBI nr
Match: gi|593705170|ref|XP_007152949.1| (hypothetical protein PHAVU_004G173800g [Phaseolus vulgaris])

HSP 1 Score: 275.0 bits (702), Expect = 7.300e-71
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGC+VETNKSNIL PIQLMDK S
Sbjct: 121 NGCVVETNKSNILTPIQLMDKTS 143
[Close]
BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Match: W9QC48_9ROSA (AP-4 complex subunit sigma OS=Morus notabilis GN=L484_005492 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.800e-71
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRF+LMVNKQGQTRLAQYYEYLTI++RRALEGEIVRKCLAR EQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTIEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVET+KSNILAPIQLMDKAS
Sbjct: 121 NGCIVETSKSNILAPIQLMDKAS 143
[Close]
BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Match: A0A0S3TD80_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G255800 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 3.900e-71
Identity = 136/143 (95.10%), Postives = 140/143 (97.90%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVETNKSNIL PIQLMDK S
Sbjct: 121 NGCIVETNKSNILTPIQLMDKTS 143
[Close]
BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Match: A0A151T2W6_CAJCA (AP-4 complex subunit sigma-1 OS=Cajanus cajan GN=KK1_015885 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.100e-71
Identity = 136/143 (95.10%), Postives = 140/143 (97.90%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+D+RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLDERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVET+KSNIL PIQLMDK S
Sbjct: 121 NGCIVETSKSNILTPIQLMDKTS 143
[Close]
BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Match: V7C6E3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G173800g PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.100e-71
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGC+VETNKSNIL PIQLMDK S
Sbjct: 121 NGCVVETNKSNILTPIQLMDKTS 143
[Close]
BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Match: C6SXR3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G005300 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.500e-70
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRFVLMVNKQGQTRLAQYYEYLT+++RRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKAS 144
           NGCIVET+KSNIL PIQLMDK S
Sbjct: 121 NGCIVETSKSNILTPIQLMDKTS 143
[Close]
BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Match: AP4S_ARATH (AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 9.600e-71
Identity = 129/142 (90.85%), Postives = 141/142 (99.30%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRF+LMVNKQGQTRLAQYYE+LT+++RRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKA 143
           NGCIVET+K+NIL+PIQLMDKA
Sbjct: 121 NGCIVETSKANILSPIQLMDKA 142
[Close]
BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Match: AP4S1_HUMAN (AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.800e-45
Identity = 81/141 (57.45%), Postives = 119/141 (84.40%), Query Frame = 1 

		  

Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ I++R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETNKSNILAPIQLMDKAS 144
           CIVETN++ ILAP+ ++DK S
Sbjct: 122 CIVETNRARILAPLLILDKMS 142
[Close]
BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Match: AP4S1_BOVIN (AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.100e-45
Identity = 81/141 (57.45%), Postives = 119/141 (84.40%), Query Frame = 1 

		  

Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ I++R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETNKSNILAPIQLMDKAS 144
           CIVETN++ ILAP+ ++DK S
Sbjct: 122 CIVETNRARILAPLLILDKMS 142
[Close]
BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Match: AP4S1_MOUSE (AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.500e-44
Identity = 81/141 (57.45%), Postives = 118/141 (83.69%), Query Frame = 1 

		  

Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE++ I++R  LE E+ + CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETNKSNILAPIQLMDKAS 144
           CIVETN++ ILAP+ ++DK S
Sbjct: 122 CIVETNRARILAPLLILDKLS 142
[Close]
BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Match: AP4S_DICDI (AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.300e-39
Identity = 81/141 (57.45%), Postives = 110/141 (78.01%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M I++ L+VN +G+TRL+QYYE +  ++R A+E EI+RKCL+R E QCSFVE+++YK++Y
Sbjct: 1   MAIKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           R+YA+LFF+VGVD  ENELAILE IH  VE +D  F NV    IMF+L+KAHF+L+EMV 
Sbjct: 61  RKYATLFFIVGVDTTENELAILELIHNYVEILDSCFDNV----IMFNLDKAHFILDEMVS 120

Query: 121 NGCIVETNKSNILAPIQLMDK 142
           NG IVE +K +IL  + L+ K
Sbjct: 121 NGDIVEISKQHILEFVNLLYK 137
[Close]
BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Match: AT2G19790.1 (SNARE-like superfamily protein)

HSP 1 Score: 267.3 bits (682), Expect = 5.400e-72
Identity = 129/142 (90.85%), Postives = 141/142 (99.30%), Query Frame = 1 

		  

Query: 1   MTIRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
           M IRF+LMVNKQGQTRLAQYYE+LT+++RRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETNKSNILAPIQLMDKA 143
           NGCIVET+K+NIL+PIQLMDKA
Sbjct: 121 NGCIVETSKANILSPIQLMDKA 142
[Close]
BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Match: AT1G47830.1 (SNARE-like superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 2.500e-29
Identity = 63/139 (45.32%), Postives = 95/139 (68.35%), Query Frame = 1 

		  

Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           IRF+L+ N+QG+TRLA+YY  L   ++  +E E+ R  + R+ +  +FVE R +K++YRR
Sbjct: 2   IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA LFF V VD  +NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G
Sbjct: 62  YAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121

Query: 123 CIVETNKSNILAPIQLMDK 142
            + ET+K  I+  +  ++K
Sbjct: 122 ELQETSKRAIIERMSELEK 140
[Close]
BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Match: AT2G17380.1 (associated protein 19)

HSP 1 Score: 122.5 bits (306), Expect = 2.100e-28
Identity = 58/139 (41.73%), Postives = 95/139 (68.35%), Query Frame = 1 

		  

Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I FVL+V++QG+ RL ++Y   T  +R  +  E+    L R  + C+F+E R YK+VY+R
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F + +D  +NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 62  YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 123 CIVETNKSNILAPIQLMDK 142
            + E++K  +   I   D+
Sbjct: 122 ELQESSKKTVARIISAQDQ 140
[Close]
BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 122.5 bits (306), Expect = 2.100e-28
Identity = 58/139 (41.73%), Postives = 95/139 (68.35%), Query Frame = 1 

		  

Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
           I FVL+V++QG+ RL ++Y      +R  +  E+    L R  + C+FVE R YK+VY+R
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F + +D ++NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 123 CIVETNKSNILAPIQLMDK 142
            + E++K  +   I   D+
Sbjct: 122 ELQESSKKTVARIISAQDQ 140
[Close]
BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 111.3 bits (277), Expect = 4.900e-25
Identity = 54/144 (37.50%), Postives = 97/144 (67.36%), Query Frame = 1 

		  

Query: 3   IRFVLMVNKQGQTRLAQYYEYLTIDQRRALEGEIVRKCLARNEQQCSFVEHRNY-----K 62
           I+ V+M+N QG+ RLA++Y+YL +++++ L   +     +R E   +F+E  +      +
Sbjct: 2   IKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSR 61

Query: 63  IVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEE 122
           +VY+ YA+L+F++  D  ENELA+L+ I +LVET+D+ F NVCELDI+F+  K H +L+E
Sbjct: 62  LVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLDE 121

Query: 123 MVMNGCIVETNKSNILAPIQLMDK 142
           +V  G ++ET+ + ++  ++ + K
Sbjct: 122 IVFGGQVLETSSAEVMKAVEEISK 145
The following BLAST results are available for this feature:
BLAST of Spo17836.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731354058|ref|XP_010688379.1|9.2e-7498.6PREDICTED: AP-4 complex subuni... [more]
gi|703063205|ref|XP_010086907.1|2.5e-7195.8AP-4 complex subunit sigma [Mo... [more]
gi|950931194|ref|XP_014506371.1|5.6e-7195.1PREDICTED: AP-4 complex subuni... [more]
gi|1009162536|ref|XP_015899491.1|5.6e-7194.4PREDICTED: AP-4 complex subuni... [more]
gi|593705170|ref|XP_007152949.1|7.3e-7194.4hypothetical protein PHAVU_004... [more]
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BLAST of Spo17836.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
W9QC48_9ROSA1.8e-7195.8AP-4 complex subunit sigma OS=... [more]
A0A0S3TD80_PHAAN3.9e-7195.1Uncharacterized protein OS=Vig... [more]
A0A151T2W6_CAJCA5.1e-7195.1AP-4 complex subunit sigma-1 O... [more]
V7C6E3_PHAVU5.1e-7194.4Uncharacterized protein OS=Pha... [more]
C6SXR3_SOYBN1.5e-7094.4Uncharacterized protein OS=Gly... [more]
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BLAST of Spo17836.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AP4S_ARATH9.6e-7190.8AP-4 complex subunit sigma OS=... [more]
AP4S1_HUMAN1.8e-4557.4AP-4 complex subunit sigma-1 O... [more]
AP4S1_BOVIN3.1e-4557.4AP-4 complex subunit sigma-1 O... [more]
AP4S1_MOUSE1.5e-4457.4AP-4 complex subunit sigma-1 O... [more]
AP4S_DICDI4.3e-3957.4AP-4 complex subunit sigma OS=... [more]
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BLAST of Spo17836.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G19790.15.4e-7290.8SNARE-like superfamily protein[more]
AT1G47830.12.5e-2945.3SNARE-like superfamily protein[more]
AT2G17380.12.1e-2841.7associated protein 19[more]
AT4G35410.22.1e-2841.7Clathrin adaptor complex small... [more]
AT3G50860.14.9e-2537.5Clathrin adaptor complex small... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011012Longin-like domainunknownSSF64356SNARE-likecoord: 3..141
score: 4.58
IPR016635Adaptor protein complex, sigma subunitPIRPIRSF015588AP_complex_sigmacoord: 2..143
score: 1.6
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 2..141
score: 1.0E
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 2..142
score: 1.5
NoneNo IPR availableGENE3D3.30.450.60coord: 3..141
score: 2.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006301 postreplication repair
biological_process GO:0006334 nucleosome assembly
biological_process GO:0044070 regulation of anion transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006820 anion transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0015031 protein transport
biological_process GO:0006121 mitochondrial electron transport, succinate to ubiquinone
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0006810 transport
biological_process GO:0006448 regulation of translational elongation
cellular_component GO:0005840 ribosome
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0005905 clathrin-coated pit
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045281 succinate dehydrogenase complex
cellular_component GO:0030127 COPII vesicle coat
molecular_function GO:0015267 channel activity
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0008177 succinate dehydrogenase (ubiquinone) activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0051538 3 iron, 4 sulfur cluster binding
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008308 voltage-gated anion channel activity
RNA-Seq Expression