Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCCTTTATTTCTCCAAAACAATTACTAGCCGTTACAATCTTCATCTTCTCTCTCTCCCAAACCCCCTCAATCTTCATCTCCTGCTAACCTGAAAAACATACACGCCAGAACTCGAATTTACGGAAAAGGATCTTGTCAATGGCGACTTCAGCATCACCTCTGATCAGCCCCTCCTCAGATAAGCGTTATTGGAGCACTTTACATGAAAGGGTCGAAACCCTTCTGGAGAATCGAAAACCTGATCTACCCTATTCTGTTTCCGCCATGGTAATAGCCGAAATCTTCATCTAATTGTATGTTTCTTCTCCGTTCATCCAATTCTATTTTTATAATTAATTTGTTGTGGGTTTTGGAACAGAATGATGGATTAGAGTCGAATCAAGCTAAGAAATTGAAGGCGGATTCTATGCTTTTGATCAGAGGTTTTGATTCAGTCGCTAATTCACTCTCTCAGCTCACTAGCAACATCGAAAAAGCCCTTCAGGTAAGAAATTTCAGATCTCCTGATTTTTCTTCAATCAATCATCTAATATGTTGGTAGAATTTTGTTGAATTTCTGAACATAATGCAAGTAATTCGAGTAATGAGTAACTCAGAAAATCTCATTATTGCTTCTTAATTAGGGAGCCAGGGAACTAGGAAAATCGTCAACAGTGACGGAAATAATCCACAGCAGTAGTAGCGACGATGCCGAAACAGATGAAGATAAGCAACCGGACAGATCAGAGAAAAAGGGAGTGAAGAGAAAGCTTGATGCAGAAGATTGTTCCGACGACGAACGAGACGGTGAAGCAACTCCTGAGAATAAAAAGAAGCAGAAGCAGCACCAAGCAGAGATGAACCTTAAGAAAGTTAAAAATGTACCAAACTTCACTTTTGCAAGTTTTAAATCTGTCTGTTTTAACTATAAACTGATTTTTGTGTCTGATTTTGTTTCAGCTGTCAGTTGCAATGGCGGCGAAATCCACCTCAATAGCTAGGGAACTTAAATCAGTGAAATCTGATATGAGTTTTCTGCAAGAGAGATGTGGTTTGCTGGAGGAGGAAAACCAGAGACTTCGAGAAGGATTTGGTAAAGAAGATAGAGCTGATGATGATGATTTGGTAAAGAATTCGATTGATTTTTTTGTTCTTGGTGTTCTAGGATAATATTCAGGGAATTGAATGTGTTATTTCCCTCTATTGTGTATGATTAACAGGTGAGGCTTCAATTAGAGGCACTACTTGCTGAAAAATCAAGACTAGCAACTGAGAACGCGAATCTAACTAGGGAGAATCAATGCCTTCGACAACTTGTCGAGTATCATCAATTCGCCTCTGAAGATTTGTCTGCCTCTTATGAAAAAGCCATTCTTGGACTTAACTTGGACTTCTCTTCTCCAACAGCTGAACATGAGGACAATCTTGAAGATGTACAAACTCCCAGAACATCAAGAGAGGTTTTTGAGTTTGAGTTTCCGGCCTGCCTTGATGACAGCTTTGATGATGGCTTTGCCGGGGAAGAAGAGCTGCTAAAAGATTGACTCGGCACTGTCAACAAGAATGCATAAACCTTGGCTGTTAACACATTTTCTTTTGTACTTTCTCAAAAACTATTCCATGTAACAATAGTATTGATCTGTACATGGGTACTTGTACTTTCTCAACATAATGAAATTTCAGAAATTTGTTTCAGTGTTAATAT CCCCTTTATTTCTCCAAAACAATTACTAGCCGTTACAATCTTCATCTTCTCTCTCTCCCAAACCCCCTCAATCTTCATCTCCTGCTAACCTGAAAAACATACACGCCAGAACTCGAATTTACGGAAAAGGATCTTGTCAATGGCGACTTCAGCATCACCTCTGATCAGCCCCTCCTCAGATAAGCGTTATTGGAGCACTTTACATGAAAGGGTCGAAACCCTTCTGGAGAATCGAAAACCTGATCTACCCTATTCTGTTTCCGCCATGAATGATGGATTAGAGTCGAATCAAGCTAAGAAATTGAAGGCGGATTCTATGCTTTTGATCAGAGGTTTTGATTCAGTCGCTAATTCACTCTCTCAGCTCACTAGCAACATCGAAAAAGCCCTTCAGGGAGCCAGGGAACTAGGAAAATCGTCAACAGTGACGGAAATAATCCACAGCAGTAGTAGCGACGATGCCGAAACAGATGAAGATAAGCAACCGGACAGATCAGAGAAAAAGGGAGTGAAGAGAAAGCTTGATGCAGAAGATTGTTCCGACGACGAACGAGACGGTGAAGCAACTCCTGAGAATAAAAAGAAGCAGAAGCAGCACCAAGCAGAGATGAACCTTAAGAAAGTTAAAAATCTGTCAGTTGCAATGGCGGCGAAATCCACCTCAATAGCTAGGGAACTTAAATCAGTGAAATCTGATATGAGTTTTCTGCAAGAGAGATGTGGTTTGCTGGAGGAGGAAAACCAGAGACTTCGAGAAGGATTTGGTAAAGAAGATAGAGCTGATGATGATGATTTGGTGAGGCTTCAATTAGAGGCACTACTTGCTGAAAAATCAAGACTAGCAACTGAGAACGCGAATCTAACTAGGGAGAATCAATGCCTTCGACAACTTGTCGAGTATCATCAATTCGCCTCTGAAGATTTGTCTGCCTCTTATGAAAAAGCCATTCTTGGACTTAACTTGGACTTCTCTTCTCCAACAGCTGAACATGAGGACAATCTTGAAGATGTACAAACTCCCAGAACATCAAGAGAGGTTTTTGAGTTTGAGTTTCCGGCCTGCCTTGATGACAGCTTTGATGATGGCTTTGCCGGGGAAGAAGAGCTGCTAAAAGATTGACTCGGCACTGTCAACAAGAATGCATAAACCTTGGCTGTTAACACATTTTCTTTTGTACTTTCTCAAAAACTATTCCATGTAACAATAGTATTGATCTGTACATGGGTACTTGTACTTTCTCAACATAATGAAATTTCAGAAATTTGTTTCAGTGTTAATAT ATGGCGACTTCAGCATCACCTCTGATCAGCCCCTCCTCAGATAAGCGTTATTGGAGCACTTTACATGAAAGGGTCGAAACCCTTCTGGAGAATCGAAAACCTGATCTACCCTATTCTGTTTCCGCCATGAATGATGGATTAGAGTCGAATCAAGCTAAGAAATTGAAGGCGGATTCTATGCTTTTGATCAGAGGTTTTGATTCAGTCGCTAATTCACTCTCTCAGCTCACTAGCAACATCGAAAAAGCCCTTCAGGGAGCCAGGGAACTAGGAAAATCGTCAACAGTGACGGAAATAATCCACAGCAGTAGTAGCGACGATGCCGAAACAGATGAAGATAAGCAACCGGACAGATCAGAGAAAAAGGGAGTGAAGAGAAAGCTTGATGCAGAAGATTGTTCCGACGACGAACGAGACGGTGAAGCAACTCCTGAGAATAAAAAGAAGCAGAAGCAGCACCAAGCAGAGATGAACCTTAAGAAAGTTAAAAATCTGTCAGTTGCAATGGCGGCGAAATCCACCTCAATAGCTAGGGAACTTAAATCAGTGAAATCTGATATGAGTTTTCTGCAAGAGAGATGTGGTTTGCTGGAGGAGGAAAACCAGAGACTTCGAGAAGGATTTGGTAAAGAAGATAGAGCTGATGATGATGATTTGGTGAGGCTTCAATTAGAGGCACTACTTGCTGAAAAATCAAGACTAGCAACTGAGAACGCGAATCTAACTAGGGAGAATCAATGCCTTCGACAACTTGTCGAGTATCATCAATTCGCCTCTGAAGATTTGTCTGCCTCTTATGAAAAAGCCATTCTTGGACTTAACTTGGACTTCTCTTCTCCAACAGCTGAACATGAGGACAATCTTGAAGATGTACAAACTCCCAGAACATCAAGAGAGGTTTTTGAGTTTGAGTTTCCGGCCTGCCTTGATGACAGCTTTGATGATGGCTTTGCCGGGGAAGAAGAGCTGCTAAAAGATTGA MATSASPLISPSSDKRYWSTLHERVETLLENRKPDLPYSVSAMNDGLESNQAKKLKADSMLLIRGFDSVANSLSQLTSNIEKALQGARELGKSSTVTEIIHSSSSDDAETDEDKQPDRSEKKGVKRKLDAEDCSDDERDGEATPENKKKQKQHQAEMNLKKVKNLSVAMAAKSTSIARELKSVKSDMSFLQERCGLLEEENQRLREGFGKEDRADDDDLVRLQLEALLAEKSRLATENANLTRENQCLRQLVEYHQFASEDLSASYEKAILGLNLDFSSPTAEHEDNLEDVQTPRTSREVFEFEFPACLDDSFDDGFAGEEELLKD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17771.1 vs. NCBI nr
Match: gi|902229297|gb|KNA21455.1| (hypothetical protein SOVF_043010 [Spinacia oleracea]) HSP 1 Score: 604.0 bits (1556), Expect = 1.600e-169 Identity = 322/326 (98.77%), Postives = 325/326 (99.69%), Query Frame = 1
BLAST of Spo17771.1 vs. NCBI nr
Match: gi|731348712|ref|XP_010685627.1| (PREDICTED: uncharacterized protein LOC104900010 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 365.2 bits (936), Expect = 1.200e-97 Identity = 223/338 (65.98%), Postives = 258/338 (76.33%), Query Frame = 1
BLAST of Spo17771.1 vs. NCBI nr
Match: gi|590717467|ref|XP_007050622.1| (Uncharacterized protein isoform 1 [Theobroma cacao]) HSP 1 Score: 294.7 bits (753), Expect = 2.000e-76 Identity = 176/331 (53.17%), Postives = 231/331 (69.79%), Query Frame = 1
BLAST of Spo17771.1 vs. NCBI nr
Match: gi|823148035|ref|XP_012473926.1| (PREDICTED: uncharacterized protein LOC105790728 [Gossypium raimondii]) HSP 1 Score: 288.9 bits (738), Expect = 1.100e-74 Identity = 175/336 (52.08%), Postives = 233/336 (69.35%), Query Frame = 1
BLAST of Spo17771.1 vs. NCBI nr
Match: gi|763755725|gb|KJB23056.1| (hypothetical protein B456_004G080100 [Gossypium raimondii]) HSP 1 Score: 288.9 bits (738), Expect = 1.100e-74 Identity = 175/336 (52.08%), Postives = 233/336 (69.35%), Query Frame = 1
BLAST of Spo17771.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPJ7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_043010 PE=4 SV=1) HSP 1 Score: 604.0 bits (1556), Expect = 1.100e-169 Identity = 322/326 (98.77%), Postives = 325/326 (99.69%), Query Frame = 1
BLAST of Spo17771.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BYR3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g172790 PE=4 SV=1) HSP 1 Score: 365.2 bits (936), Expect = 8.500e-98 Identity = 223/338 (65.98%), Postives = 258/338 (76.33%), Query Frame = 1
BLAST of Spo17771.1 vs. UniProtKB/TrEMBL
Match: A0A061DPP8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_004388 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 1.400e-76 Identity = 176/331 (53.17%), Postives = 231/331 (69.79%), Query Frame = 1
BLAST of Spo17771.1 vs. UniProtKB/TrEMBL
Match: A0A0D2R0W7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G080100 PE=4 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 7.800e-75 Identity = 175/336 (52.08%), Postives = 233/336 (69.35%), Query Frame = 1
BLAST of Spo17771.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NKC4_GOSAR (F-box/WD repeat-containing 10 OS=Gossypium arboreum GN=F383_20422 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 2.300e-74 Identity = 174/336 (51.79%), Postives = 232/336 (69.05%), Query Frame = 1
BLAST of Spo17771.1 vs. TAIR (Arabidopsis)
Match: AT4G02800.1 (unknown protein) HSP 1 Score: 263.8 bits (673), Expect = 1.400e-70 Identity = 154/293 (52.56%), Postives = 213/293 (72.70%), Query Frame = 1
BLAST of Spo17771.1 vs. TAIR (Arabidopsis)
Match: AT5G01970.1 (unknown protein) HSP 1 Score: 109.8 bits (273), Expect = 3.300e-24 Identity = 86/255 (33.73%), Postives = 143/255 (56.08%), Query Frame = 1
BLAST of Spo17771.1 vs. TAIR (Arabidopsis)
Match: AT1G30050.1 (unknown protein) HSP 1 Score: 102.8 bits (255), Expect = 4.000e-22 Identity = 80/252 (31.75%), Postives = 130/252 (51.59%), Query Frame = 1
BLAST of Spo17771.1 vs. TAIR (Arabidopsis)
Match: AT2G30530.1 (unknown protein) HSP 1 Score: 101.3 bits (251), Expect = 1.200e-21 Identity = 92/300 (30.67%), Postives = 148/300 (49.33%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17771.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17771.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17771.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo17771.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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