Spo17685 (gene)

Overview
NameSpo17685
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 619862 .. 621074 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACTCAATCATGATTCATCTTCTTCGCCTTACCCTTGTGGAATTTAAAGTGGGCAAGTTTGCCACTGCATCATCTTCGGCTCGCCGCACAGGCGCCCACTCGCCCTCCACCTCTCTCAAATCCAGGTAATCTACTTTCTAAAGTTCGAATTTCTCTTTGCATGTTGATGCTTCATATTTAATAGTCCATGTTAATTAGCTTGTTTATTACATCACCGTTATTCTTATTCAATTCATCAAATTTTGATGGATTTGAACGTGTTGCCGTTGTTTAGAATTGATGATTTCTGTACACATTACGGATTACACAATTAGGGTTTCAAATTGATGGAAGATTGAATTGTTGTGTATTTCTGGTCACTGATTTTTCAATTGGAATTGATATTATGATTGGCAGTGCAATTGTTTCCCAATTGAGAGTCGGAAGTTACTTTTGATTGGTTTCATGTTAACTTGGGAAATGTTGGAGGACTTATTCTGCATTTTCCCCCCATAACTTGTAAAATTGTTTCATTGTAAATGTAATTGTTTGTCAATAGTCTGAAAAAATTGGATTGTTTAATCTAATTCAAATTACCACTTAACTTTATCAGGCTTCATTTGGTTCACTGACTGTATTATTTAAGCATTCTTGTTAATAACTGGCATCAATTATGCTGATTTGCTTAAATAATATAATCAATTAACCACTCTTCCTACACCACTCTAATCAATCTGCTACGCAAAGTCATACTCCGTCGATTAACGGCAAGTGAAACGATAAAAAACAAAGAAAACACAAATTAGTGTTGCTAGAAAATTCTGGACACTTTCTTCTACAATACAATAATATACATTCTGTAATTTATAGCCGGGTCTTTTGGAGAGATGTCTTGTGCAGTGAGTAGTTGTGCTTTCACACTATCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCGTCTCATCAGGCTAAGTTATCTGATTTGCAAGATTGGAGATTGGTGTCAATTTGAATTATCGGATCCGTTCTGGGTTGACTTCTGGTGGGTCTATTCTTTTTGGGTCGGGTTCAAACGTGTCAATTTCTGTGTTGGGTCTGGTTAGGTTGGGTGAAGTCACTATTGGGTTGCGTTGCGTGACTTGGTTCGGATTATTTGTCTGCTCGGTTCAAGTCTGGTATCCAATATGCAAGACTATAGGTCATTCCGAATATACTAAGTATAGTTACAAGGGTTGA

mRNA sequence

TAACTCAATCATGATTCATCTTCTTCGCCTTACCCTTGTGGAATTTAAAGTGGGCAAGTTTGCCACTGCATCATCTTCGGCTCGCCGCACAGGCGCCCACTCGCCCTCCACCTCTCTCAAATCCAGATTGGAGATTGGTGTCAATTTGAATTATCGGATCCGTTCTGGGTTGACTTCTGGTGGGTCTATTCTTTTTGGGTCGGGTTCAAACGTGTCAATTTCTGTGTTGGGTCTGGTTAGGTTGGGTGAAGTCACTATTGGGTTGCGTTGCGTGACTTGGTTCGGATTATTTGTCTGCTCGGTTCAAGTCTGGTATCCAATATGCAAGACTATAGGTCATTCCGAATATACTAAGTATAGTTACAAGGGTTGA

Coding sequence (CDS)

ATGATTCATCTTCTTCGCCTTACCCTTGTGGAATTTAAAGTGGGCAAGTTTGCCACTGCATCATCTTCGGCTCGCCGCACAGGCGCCCACTCGCCCTCCACCTCTCTCAAATCCAGATTGGAGATTGGTGTCAATTTGAATTATCGGATCCGTTCTGGGTTGACTTCTGGTGGGTCTATTCTTTTTGGGTCGGGTTCAAACGTGTCAATTTCTGTGTTGGGTCTGGTTAGGTTGGGTGAAGTCACTATTGGGTTGCGTTGCGTGACTTGGTTCGGATTATTTGTCTGCTCGGTTCAAGTCTGGTATCCAATATGCAAGACTATAGGTCATTCCGAATATACTAAGTATAGTTACAAGGGTTGA

Protein sequence

MIHLLRLTLVEFKVGKFATASSSARRTGAHSPSTSLKSRLEIGVNLNYRIRSGLTSGGSILFGSGSNVSISVLGLVRLGEVTIGLRCVTWFGLFVCSVQVWYPICKTIGHSEYTKYSYKG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17685.1Spo17685.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo17685.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo17685.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo17685.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo17685.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009558 embryo sac cellularization
biological_process GO:0009960 endosperm development
biological_process GO:0006886 intracellular protein transport
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0007021 tubulin complex assembly
biological_process GO:0006508 proteolysis
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005737 cytoplasm
cellular_component GO:0030126 COPI vesicle coat
molecular_function GO:0005525 GTP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004185 serine-type carboxypeptidase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005198 structural molecule activity
RNA-Seq Expression